pycom01g20510

Sorbitol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0018083
Physical Location & Seq
Forward (+)
18908431 .. 18909059
629 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20510.3

Sequence Viewer

Length: 297 bp
ATGGGTAAGGGAGGCAAAGCTGCTGAGCCAGAAAACATGGGTGCTTGGCTTCTTGGTGTTAACAACATCAAGATCCAACCTTTCAAGCTTCCCAGTGTTGGGGCCCATGATGTTCGAGTTCGGATCAAGGCTGTCGGCATTTGTGGAAGTGATGTTCACTACCTCAAGACCATGAAGTGTGCAGATTTTGAAGTTAAAGAGCCAATGGTAATTGGCCATGAGTGTGCTGGGATCGTTGAGGAAATCGGGACCGAGGTGATGCATCTCGCTCTGGGAAGATCGATCGTGTGGCAGTAG

Protein Analysis

99

Amino Acids

10.61

Weight (kDa)

6.89

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018083)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g28900
malus_domestica MD00G1006100.v1.1 MD13G1239400.v1.1 MD17G1261300.v1.1
pyrus_communis pycom01g20510 pycom07g24110
rosa_multiflora Rmu_sc0016049.1_g000005
rosa_roxburghii Rroxscaffold_4G00282120
rosa_samantha Rh1AG407500 Rh1CG385000 Rh1DG402000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 67, 131, 239
AcoI YGGCCR 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 98, 99
AgsI TTSAA 2 cut(s) 85, 191
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 2 cut(s) 20, 88
AluI AGCT 2 cut(s) 20, 88
AlwI GGATC 3 cut(s) 67, 131, 239
AoxI GGCC 2 cut(s) 102, 214
ApaI GGGCCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 20
AspS9I GGNCC 3 cut(s) 102, 103, 249
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 216
BanII GRGCYC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 7
BisI GCNGC 1 cut(s) 21
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 3 cut(s) 102, 103, 249
BmiI GGNNCC 3 cut(s) 103, 104, 250
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 249, 271
BmuI ACTGGG 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 99
Bse1I ACTGG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 98, 99
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 7
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 104, 216
BshVI ATCGAT 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 98, 99
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 2 cut(s) 104, 216
Bsp120I GGGCCC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 5 cut(s) 72, 123, 231, 278, 282
Bsp1720I GCTNAGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 104, 216
BspCNI CTCAG 1 cut(s) 16
BspDI ATCGAT 1 cut(s) 281
BspLI GGNNCC 3 cut(s) 103, 104, 250
BspPI GGATC 3 cut(s) 67, 131, 239
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 5 cut(s) 72, 123, 231, 278, 282
BstDEI CTNAG 1 cut(s) 24
BstKTI GATC 5 cut(s) 75, 126, 234, 281, 285
BstMBI GATC 5 cut(s) 72, 123, 231, 278, 282
BstMCI CGRYCG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 281
BsuRI GGCC 2 cut(s) 104, 216
BsuTUI ATCGAT 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 100
Cfr13I GGNCC 3 cut(s) 102, 103, 249
ClaI ATCGAT 1 cut(s) 281
CviAII CATG 4 cut(s) 37, 107, 172, 218
CviJI RGCY 8 cut(s) 20, 28, 49, 88, 104, 131, 202, 216
CviKI_1 RGCY 8 cut(s) 20, 28, 49, 88, 104, 131, 202, 216
DdeI CTNAG 1 cut(s) 24
DpnI GATC 5 cut(s) 74, 125, 233, 280, 284
DpnII GATC 5 cut(s) 72, 123, 231, 278, 282
EaeI YGGCCR 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 4 cut(s) 40, 110, 175, 221
FaiI YATR 4 cut(s) 38, 108, 173, 219
FaqI GGGAC 1 cut(s) 262
FatI CATG 4 cut(s) 36, 106, 171, 217
Fnu4HI GCNGC 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 104, 216
Hin1II CATG 4 cut(s) 40, 110, 175, 221
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 86
HpaI GTTAAC 1 cut(s) 61
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 61, 157
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 70, 166, 247
Hpy8I GTNNAC 2 cut(s) 61, 157
HpyCH4V TGCA 2 cut(s) 182, 262
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 4 cut(s) 40, 110, 175, 221
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 72, 123, 231, 278, 282
LpnPI CCDG 4 cut(s) 42, 106, 213, 257
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 2 cut(s) 249, 271
MalI GATC 5 cut(s) 74, 125, 233, 280, 284
MboI GATC 5 cut(s) 72, 123, 231, 278, 282
MboII GAAGA 1 cut(s) 288
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 1 cut(s) 210
MluNI TGGCCA 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 4 cut(s) 5, 173, 232, 247
Mox20I TGGCCA 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 264
MscI TGGCCA 1 cut(s) 216
MseI TTAA 2 cut(s) 60, 195
MslI CAYNNNNRTG 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 216
NdeII GATC 5 cut(s) 72, 123, 231, 278, 282
NlaIII CATG 4 cut(s) 40, 110, 175, 221
NlaIV GGNNCC 3 cut(s) 103, 104, 250
NsiI ATGCAT 1 cut(s) 264
PkrI GCNGC 1 cut(s) 22
Ple19I CGATCG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 103, 104, 250
PspOMI GGGCCC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 102, 103, 249
PsuI RGATCY 1 cut(s) 72
PvuI CGATCG 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 60, 195
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 5 cut(s) 72, 123, 231, 278, 282
Sau96I GGNCC 3 cut(s) 102, 103, 249
SduI GDGCHC 1 cut(s) 106
SetI ASST 5 cut(s) 22, 82, 90, 165, 258
SfaNI GCATC 2 cut(s) 249, 271
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 210
TaqI TCGA 2 cut(s) 115, 281
TaqII GACCGA 1 cut(s) 266
TasI AATT 1 cut(s) 210
Tru1I TTAA 2 cut(s) 60, 195
Tru9I TTAA 2 cut(s) 60, 195
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 249
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.