Rh1AG407500

Sorbitol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018083
Physical Location & Seq
Reverse (-)
63551110 .. 63552186
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG407500.1

Sequence Viewer

Length: 522 bp
ATGGGAGCAGGACCCATAGAGCTTGTTACACTTCTATCTGCTCGCTCTTTTGGGGCACTCAGAATTGTCATTGCAGATATGGATGATCACCGTTTATCAGTTGCAAAGACTCTTGGTGCAGATGAGATCGTGAAAGTTTCAACAAACATCCAGGATGTAGATGAAGAAGTGGTTCAGATAGGTAAAGCTATGGGAGCTGGAGTAGAAGTGACCTTTGATTGCGCAGGCTTTGATAAGACCATGTCAACAGGTCTGCGTGCTACTCGTCCCGGTGGCAAAGTTTGCCCTGTGGGAATGGGTCACCATGTGATGACTCTCCCATGTACTCACTTCAACTTCTGCCAGGGTGGTAGATGTGATTGGAATTTTCCGATACAAGAACACATTTGGCGTCTATGCCTTGAGTTTTTGGGAAGTGGTATGATCGATGTGAAGCCCCCTCATAACACATCGAGTTGGGTTTTCTCAAAAGGAGGTGGAAGACACCTACGCAACCAGTGCTCGTGGAGGCAATGCCATTAA

Protein Analysis

173

Amino Acids

18.91

Weight (kDa)

7.06

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 9 - 109 6.5e-18 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018083)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g28900
malus_domestica MD00G1006100.v1.1 MD13G1239400.v1.1 MD17G1261300.v1.1
pyrus_communis pycom01g20510 pycom07g24110
rosa_multiflora Rmu_sc0016049.1_g000005
rosa_roxburghii Rroxscaffold_4G00282120
rosa_samantha Rh1AG407500 Rh1CG385000 Rh1DG402000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 223
AcsI RAATTY 1 cut(s) 364
AcyI GRCGYC 1 cut(s) 391
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 1 cut(s) 325
AgsI TTSAA 2 cut(s) 141, 334
AjnI CCWGG 2 cut(s) 150, 342
AluBI AGCT 3 cut(s) 22, 188, 197
AluI AGCT 3 cut(s) 22, 188, 197
Alw21I GWGCWC 1 cut(s) 503
ApoI RAATTY 1 cut(s) 364
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 80, 293
AvaII GGWCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 58
BauI CACGAG 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 503
BciT130I CCWGG 2 cut(s) 152, 344
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 270
Bme1390I CCNGG 3 cut(s) 152, 270, 344
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 3 cut(s) 152, 270, 344
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 343
BsaXI ACNNNNNCTCC 4 cut(s) 186, 192, 216, 222
Bse1I ACTGG 1 cut(s) 496
Bse3DI GCAATG 2 cut(s) 69, 518
BseBI CCWGG 2 cut(s) 152, 344
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 3 cut(s) 88, 147, 160
BseMI GCAATG 2 cut(s) 69, 518
BseMII CTCAG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 58, 503
Bsp143I GATC 3 cut(s) 85, 126, 423
BspCNI CTCAG 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 69, 518
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 3 cut(s) 85, 126, 423
BssNI GRCGYC 1 cut(s) 391
BssSI CACGAG 1 cut(s) 502
Bst2BI CACGAG 1 cut(s) 502
Bst2UI CCWGG 2 cut(s) 152, 344
Bst4CI ACNGT 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 391
BstAPI GCANNNNNTGC 2 cut(s) 282, 498
BstC8I GCNNGC 3 cut(s) 43, 226, 258
BstDEI CTNAG 1 cut(s) 59
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 3 cut(s) 88, 147, 160
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 3 cut(s) 88, 129, 426
BstMBI GATC 3 cut(s) 85, 126, 423
BstMWI GCNNNNNNNGC 3 cut(s) 194, 282, 498
BstNI CCWGG 2 cut(s) 152, 344
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 3 cut(s) 150, 268, 342
BstSLI GKGCMC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 487
Bsu15I ATCGAT 1 cut(s) 426
BsuTUI ATCGAT 1 cut(s) 426
BtsCI GGATG 3 cut(s) 88, 147, 160
BtsIMutI CAGTG 1 cut(s) 503
Cac8I GCNNGC 3 cut(s) 43, 226, 258
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 426
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 324
CviAII CATG 3 cut(s) 241, 305, 321
CviJI RGCY 5 cut(s) 22, 188, 197, 228, 436
CviKI_1 RGCY 5 cut(s) 22, 188, 197, 228, 436
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 59
DpnI GATC 3 cut(s) 87, 128, 425
DpnII GATC 3 cut(s) 85, 126, 423
DraIII CACNNNGTG 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 150, 342
FaeI CATG 3 cut(s) 244, 308, 324
FaiI YATR 9 cut(s) 17, 80, 191, 242, 306, 322, 397, 422, 444
FaqI GGGAC 1 cut(s) 252
FatI CATG 3 cut(s) 240, 304, 320
FbaI TGATCA 1 cut(s) 85
FokI GGATG 3 cut(s) 95, 134, 167
FspI TGCGCA 1 cut(s) 223
GlaI GCGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 219
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 380
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 391
Hin1II CATG 3 cut(s) 244, 308, 324
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 2 cut(s) 109, 313
HpaII CCGG 1 cut(s) 270
HphI GGTGA 2 cut(s) 80, 293
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 3 cut(s) 62, 177, 372
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 3 cut(s) 74, 104, 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 282, 498
HpyF3I CTNAG 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 391
Hsp92II CATG 3 cut(s) 244, 308, 324
HspAI GCGC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 3 cut(s) 85, 126, 423
LmnI GCTCC 2 cut(s) 5, 194
MaeIII GTNAC 3 cut(s) 25, 208, 299
MalI GATC 3 cut(s) 87, 128, 425
MboI GATC 3 cut(s) 85, 126, 423
MboII GAAGA 2 cut(s) 176, 492
MhlI GDGCHC 2 cut(s) 58, 503
MluCI AATT 2 cut(s) 63, 364
MlyI GAGTC 2 cut(s) 103, 307
MnlI CCTC 3 cut(s) 450, 467, 501
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 1 cut(s) 520
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 3 cut(s) 152, 270, 344
MvaI CCWGG 2 cut(s) 152, 344
MwoI GCNNNNNNNGC 3 cut(s) 194, 282, 498
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 85, 126, 423
NlaIII CATG 3 cut(s) 244, 308, 324
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 2 cut(s) 208, 299
NsbI TGCGCA 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 171
PflFI GACNNNGTC 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 150
PleI GAGTC 2 cut(s) 103, 307
PpsI GAGTC 2 cut(s) 103, 307
PpuMI RGGWCCY 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 150, 342
PspEI GGTNACC 1 cut(s) 299
PspGI CCWGG 2 cut(s) 150, 342
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 11
PspPPI RGGWCCY 1 cut(s) 11
PsyI GACNNNGTC 1 cut(s) 241
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 520
Sau3AI GATC 3 cut(s) 85, 126, 423
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 2 cut(s) 103, 307
ScrFI CCNGG 3 cut(s) 152, 270, 344
SduI GDGCHC 2 cut(s) 58, 503
SetI ASST 8 cut(s) 24, 184, 190, 199, 215, 253, 478, 489
SinI GGWCC 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 2 cut(s) 63, 364
StyD4I CCNGG 3 cut(s) 150, 268, 342
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 426, 452
TasI AATT 2 cut(s) 63, 364
TatI WGTACW 1 cut(s) 323
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TscAI CASTG 1 cut(s) 503
TseFI GTSAC 2 cut(s) 208, 299
Tsp45I GTSAC 2 cut(s) 208, 299
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 503
Tth111I GACNNNGTC 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.