Rmu_sc0016049.1_g000005

Sorbitol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016049.1
OG0018083
Physical Location & Seq
Forward (+)
23081 .. 30040
6960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016049.1_g000005.1.cds

Sequence Viewer

Length: 906 bp
atgtgtgagggagggaccatggaggagaacatggctgcttggcttgttggtatcaacaacctcaagattcaacctttcaagctccctgatcttggacttcatgatgttaggattcggatgaaggctgttgggatatgtgggagtgatgccatgagatctgcaaaatctatagttaaagagccaatggtaattgggcatgagtgtgccgggatcatagaggaagttggggctgaggtgaagcatctggtgcctggtgaccgtgtggcactagtgcccggtatcagttgctggcggtgtgagtcctgcaaagaaggtcgatacaatctatgcccggatatgaagtttttcgccactccactggttcatgaaacaaatgtttcggtcatgggagcaggacccatagagcttgttacacttctatctgctcgctcttttggggcactcagaattgtcattgcagatatggatgatcaccgtttatcagttgcaaagactcttggtgcagatgagatcgtgaaagtttcaacaaacatccaggatgtagatgaagaagtggttcagataggtaaagctatgggagctggagtagaagtgacctttgattgcgcaggctttgataagaccatgtcaacaggtctgcgtgctactcgtcccggtggcaaagtttgccctgtgggaatgggtcaccatgtgatgactctcccatgtactcacttcaacttctgccagggtggtagatgtgattggaattttccgatacaagaacacatttggcgtctatgccttgagtttttgggaagtggtatgatcgatgtgaagccccctcataacacatcgagtcgggttttctcaaaaggaggtggaagacacctacgcaaccagtgctcgtggaggcaatgccattaa

Protein Analysis

301

Amino Acids

32.86

Weight (kDa)

6.85

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018083)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g28900
malus_domestica MD00G1006100.v1.1 MD13G1239400.v1.1 MD17G1261300.v1.1
pyrus_communis pycom01g20510 pycom07g24110
rosa_multiflora Rmu_sc0016049.1_g000005
rosa_roxburghii Rroxscaffold_4G00282120
rosa_samantha Rh1AG407500 Rh1CG385000 Rh1DG402000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 247
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 748
AcyI GRCGYC 1 cut(s) 775
AdeI CACNNNGTG 1 cut(s) 691
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 4 cut(s) 71, 79, 525, 718
AhlI ACTAGT 1 cut(s) 268
AjnI CCWGG 3 cut(s) 250, 534, 726
AluBI AGCT 4 cut(s) 82, 406, 572, 581
AluI AGCT 4 cut(s) 82, 406, 572, 581
Alw21I GWGCWC 1 cut(s) 887
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 748
Asp700I GAANNNNTTC 2 cut(s) 344, 555
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 15, 395
AsuC2I CCSGG 4 cut(s) 208, 276, 332, 654
AsuHPI GGTGA 4 cut(s) 247, 266, 464, 677
AvaII GGWCC 2 cut(s) 15, 395
BaeGI GKGCMC 2 cut(s) 276, 442
BanI GGYRCC 1 cut(s) 247
BauI CACGAG 1 cut(s) 886
BbsI GAAGAC 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 887
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 22
BciT130I CCWGG 3 cut(s) 252, 536, 728
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 4 cut(s) 208, 276, 332, 654
BcuI ACTAGT 1 cut(s) 268
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 155
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 7 cut(s) 208, 252, 276, 332, 536, 654, 728
Bme18I GGWCC 2 cut(s) 15, 395
BmgT120I GGNCC 2 cut(s) 15, 395
BmiI GGNNCC 3 cut(s) 16, 249, 397
BmrFI CCNGG 7 cut(s) 208, 252, 276, 332, 536, 654, 728
BmsI GCATC 2 cut(s) 136, 250
BpiI GAAGAC 1 cut(s) 871
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 47, 806
BpuMI CCSGG 4 cut(s) 208, 276, 332, 654
Bsa29I ATCGAT 1 cut(s) 810
BsaHI GRCGYC 1 cut(s) 775
BsaJI CCNNGG 2 cut(s) 18, 727
BsaXI ACNNNNNCTCC 4 cut(s) 570, 576, 600, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 363, 880
Bse3DI GCAATG 2 cut(s) 453, 902
BseBI CCWGG 3 cut(s) 252, 536, 728
BseCI ATCGAT 1 cut(s) 810
BseDI CCNNGG 2 cut(s) 18, 727
BseGI GGATG 4 cut(s) 123, 472, 531, 544
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 2 cut(s) 453, 902
BseMII CTCAG 2 cut(s) 222, 457
BseNI ACTGG 2 cut(s) 363, 880
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 2 cut(s) 276, 442
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 522
BshNI GGYRCC 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 810
BsiHKAI GWGCWC 1 cut(s) 887
BsiSI CCGG 4 cut(s) 207, 276, 332, 654
BslFI GGGAC 2 cut(s) 28, 636
BslI CCNNNNNNNGG 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 28, 636
Bsp1286I GDGCHC 3 cut(s) 276, 442, 887
Bsp143I GATC 6 cut(s) 88, 155, 210, 469, 510, 807
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 292
BspCNI CTCAG 2 cut(s) 223, 456
BspDI ATCGAT 1 cut(s) 810
BspHI TCATGA 2 cut(s) 100, 364
BspLI GGNNCC 3 cut(s) 16, 249, 397
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 247
BsrDI GCAATG 2 cut(s) 453, 902
BsrI ACTGG 2 cut(s) 363, 880
BssECI CCNNGG 2 cut(s) 18, 727
BssMI GATC 6 cut(s) 88, 155, 210, 469, 510, 807
BssNI GRCGYC 1 cut(s) 775
BssSI CACGAG 1 cut(s) 886
BssT1I CCWWGG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 886
Bst2UI CCWGG 3 cut(s) 252, 536, 728
Bst4CI ACNGT 2 cut(s) 260, 476
BstACI GRCGYC 1 cut(s) 775
BstAPI GCANNNNNTGC 3 cut(s) 247, 666, 882
BstC8I GCNNGC 4 cut(s) 290, 427, 610, 642
BstDEI CTNAG 2 cut(s) 231, 443
BstDSI CCRYGG 1 cut(s) 18
BstEII GGTNACC 2 cut(s) 254, 683
BstF5I GGATG 4 cut(s) 123, 472, 531, 544
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 6 cut(s) 91, 158, 213, 472, 513, 810
BstMBI GATC 6 cut(s) 88, 155, 210, 469, 510, 807
BstMWI GCNNNNNNNGC 4 cut(s) 247, 578, 666, 882
BstNI CCWGG 3 cut(s) 252, 536, 728
BstPI GGTNACC 2 cut(s) 254, 683
BstSCI CCNGG 7 cut(s) 206, 250, 274, 330, 534, 652, 726
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 276, 442
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 871
BstX2I RGATCY 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 358
BstYI RGATCY 1 cut(s) 155
Bsu15I ATCGAT 1 cut(s) 810
BsuTUI ATCGAT 1 cut(s) 810
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 4 cut(s) 123, 472, 531, 544
BtsIMutI CAGTG 2 cut(s) 356, 887
Cac8I GCNNGC 4 cut(s) 290, 427, 610, 642
CaiI CAGNNNCTG 1 cut(s) 288
CciI TCATGA 2 cut(s) 100, 364
CfoI GCGC 1 cut(s) 608
Cfr13I GGNCC 2 cut(s) 15, 395
ClaI ATCGAT 1 cut(s) 810
CseI GACGC 1 cut(s) 764
Csp6I GTAC 1 cut(s) 708
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 2 cut(s) 231, 443
DpnI GATC 6 cut(s) 90, 157, 212, 471, 512, 809
DpnII GATC 6 cut(s) 88, 155, 210, 469, 510, 807
DraIII CACNNNGTG 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 15, 395
Eco91I GGTNACC 2 cut(s) 254, 683
EcoO109I RGGNCCY 1 cut(s) 395
EcoO65I GGTNACC 2 cut(s) 254, 683
EcoRII CCWGG 3 cut(s) 250, 534, 726
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaqI GGGAC 2 cut(s) 28, 636
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 4 cut(s) 130, 479, 518, 551
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 269
FspI TGCGCA 1 cut(s) 607
GlaI GCGC 1 cut(s) 607
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 603
HapII CCGG 4 cut(s) 207, 276, 332, 654
HgaI GACGC 1 cut(s) 764
HhaI GCGC 1 cut(s) 608
Hin1I GRCGYC 1 cut(s) 775
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 6 cut(s) 67, 112, 299, 493, 697, 838
HpaII CCGG 4 cut(s) 207, 276, 332, 654
HphI GGTGA 4 cut(s) 247, 266, 464, 677
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 4 cut(s) 117, 446, 561, 756
Hpy188III TCNNGA 4 cut(s) 64, 101, 365, 514
Hpy8I GTNNAC 1 cut(s) 630
HpyAV CCTTC 2 cut(s) 115, 305
HpyCH4III ACNGT 2 cut(s) 260, 476
HpyCH4V TGCA 5 cut(s) 161, 306, 458, 488, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 578, 666, 882
HpyF3I CTNAG 2 cut(s) 231, 443
Hsp92I GRCGYC 1 cut(s) 775
HspAI GCGC 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 6 cut(s) 88, 155, 210, 469, 510, 807
LmnI GCTCC 3 cut(s) 87, 389, 578
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 136, 250
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 4 cut(s) 254, 409, 592, 683
MalI GATC 6 cut(s) 90, 157, 212, 471, 512, 809
MboI GATC 6 cut(s) 88, 155, 210, 469, 510, 807
MboII GAAGA 2 cut(s) 560, 876
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 3 cut(s) 276, 442, 887
MluCI AATT 3 cut(s) 189, 447, 748
MlyI GAGTC 4 cut(s) 308, 487, 691, 847
MnlI CCTC 8 cut(s) 5, 16, 71, 211, 226, 834, 851, 885
MroXI GAANNNNTTC 2 cut(s) 344, 555
MseI TTAA 2 cut(s) 174, 904
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 4 cut(s) 207, 276, 332, 654
MspR9I CCNGG 7 cut(s) 208, 252, 276, 332, 536, 654, 728
MvaI CCWGG 3 cut(s) 252, 536, 728
MwoI GCNNNNNNNGC 4 cut(s) 247, 578, 666, 882
NciI CCSGG 4 cut(s) 208, 276, 332, 654
NcoI CCATGG 1 cut(s) 18
NdeII GATC 6 cut(s) 88, 155, 210, 469, 510, 807
NlaIV GGNNCC 3 cut(s) 16, 249, 397
NmuCI GTSAC 3 cut(s) 254, 592, 683
NsbI TGCGCA 1 cut(s) 607
PagI TCATGA 2 cut(s) 100, 364
PdmI GAANNNNTTC 2 cut(s) 344, 555
PfeI GAWTC 2 cut(s) 67, 112
PflFI GACNNNGTC 1 cut(s) 625
PfoI TCCNGGA 1 cut(s) 534
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 4 cut(s) 307, 487, 691, 846
PpsI GAGTC 4 cut(s) 307, 487, 691, 846
PpuMI RGGWCCY 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 3 cut(s) 250, 534, 726
PspEI GGTNACC 2 cut(s) 254, 683
PspGI CCWGG 3 cut(s) 250, 534, 726
PspN4I GGNNCC 3 cut(s) 16, 249, 397
PspPI GGNCC 2 cut(s) 15, 395
PspPPI RGGWCCY 1 cut(s) 395
PstNI CAGNNNCTG 1 cut(s) 288
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 625
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 2 cut(s) 174, 904
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 6 cut(s) 88, 155, 210, 469, 510, 807
Sau96I GGNCC 2 cut(s) 15, 395
SchI GAGTC 4 cut(s) 308, 487, 691, 847
ScrFI CCNGG 7 cut(s) 208, 252, 276, 332, 536, 654, 728
SduI GDGCHC 3 cut(s) 276, 442, 887
SfaNI GCATC 2 cut(s) 136, 250
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 2 cut(s) 15, 395
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 62, 785
SmoI CTYRAG 2 cut(s) 62, 785
SpeI ACTAGT 1 cut(s) 268
Sse9I AATT 3 cut(s) 189, 447, 748
SsiI CCGC 1 cut(s) 292
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 7 cut(s) 206, 250, 274, 330, 534, 652, 726
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 260, 476
TaqI TCGA 3 cut(s) 316, 810, 836
TaqII GACCGA 1 cut(s) 370
TasI AATT 3 cut(s) 189, 447, 748
TatI WGTACW 1 cut(s) 707
TfiI GAWTC 2 cut(s) 67, 112
Tru1I TTAA 2 cut(s) 174, 904
Tru9I TTAA 2 cut(s) 174, 904
TscAI CASTG 2 cut(s) 363, 887
TseFI GTSAC 3 cut(s) 254, 592, 683
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 3 cut(s) 254, 592, 683
TspDTI ATGAA 6 cut(s) 89, 134, 353, 353, 381, 561
TspRI CASTG 2 cut(s) 363, 887
Tth111I GACNNNGTC 1 cut(s) 625
VpaK11BI GGWCC 2 cut(s) 15, 395
XapI RAATTY 1 cut(s) 748
XmnI GAANNNNTTC 2 cut(s) 344, 555
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.