Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0018083

Physical Location & Seq

Genomic Coordinates Forward (+)

24900101 .. 24900771

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTCTTTTTACAGAAAAGCACTCGGAATGAGTCCTCAGGAAACATTCAAGCAATGTCCTGTTTCAGGTTTGGCTTATCCAAATTTTATATAGGTTTACAAACCAACTTGACCAAATCTGACTATCAAGACATCTATAAATACCACACCCTAGCCAAGCTTGTTCCATCACAAAATACAAGTACTCTGTCTTTGAAACACAAAACACAGAGAAAGCAAGACACTTCAGAAAAAAACAGACCCAGTATCAAAAACATTATGGGTAAGGGAGGGCAATTGATTAACGAAGTGGCTAAGCAAGCCAAACCTATTAAGCAACAAAACATGGCTGCTTGGCTTGTTGATGTCAACACCATCAGGATCCTACCTTTCAAGCTCCCCAGTATCGGACCCAATGATGTTCGGATTCGGATTAAGGCTGTCGGCATTTGTGGAAGCGATGTTCACTACCTCAAGACGATGAAATGTGCGGATTTTGAGGTTAAGGAGCCAATGGTGATCGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

170

Amino Acids

19.18

Weight (kDa)

9.81

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018083)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28900
malus_domestica	MD00G1006100.v1.1 MD13G1239400.v1.1 MD17G1261300.v1.1
pyrus_communis	pycom01g20510 pycom07g24110
rosa_multiflora	Rmu_sc0016049.1_g000005
rosa_roxburghii	Rroxscaffold_4G00282120
rosa_samantha	Rh1AG407500 Rh1CG385000 Rh1DG402000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	2 cut(s)	355, 368
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	66, 386
AgsI	TTSAA	3 cut(s)	50, 196, 373
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	2 cut(s)	160, 376
AluI	AGCT	2 cut(s)	160, 376
AlwI	GGATC	2 cut(s)	355, 368
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	175, 362
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	330
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	331
BmcAI	AGTACT	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	3 cut(s)	362, 391, 489
BmrI	ACTGGG	2 cut(s)	237, 375
BmuI	ACTGGG	2 cut(s)	237, 375
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 386
Bse1I	ACTGG	2 cut(s)	243, 381
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	66, 386
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	243, 381
BseXI	GCAGC	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	66, 386
Bsp143I	GATC	3 cut(s)	360, 498, 502
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	50
BspDI	ATCGAT	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	362, 391, 489
BspPI	GGATC	2 cut(s)	355, 368
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	243, 381
BssMI	GATC	3 cut(s)	360, 498, 502
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	37, 294
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	363, 501, 505
BstMBI	GATC	3 cut(s)	360, 498, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
Bsu15I	ATCGAT	1 cut(s)	501
Bsu36I	CCTNAGG	1 cut(s)	37
BsuTUI	ATCGAT	1 cut(s)	501
BtgZI	GCGATG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	325
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	37, 294
DpnI	GATC	3 cut(s)	362, 500, 504
DpnII	GATC	3 cut(s)	360, 498, 502
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	328
FaiI	YATR	5 cut(s)	90, 92, 138, 260, 326
FatI	CATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	32, 406
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	3 cut(s)	98, 349, 445
Hpy188I	TCNGA	6 cut(s)	27, 121, 229, 389, 405, 411
Hpy188III	TCNNGA	4 cut(s)	39, 128, 358, 454
Hpy8I	GTNNAC	3 cut(s)	98, 349, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	37, 294
Hsp92II	CATG	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	360, 498, 502
LmnI	GCTCC	2 cut(s)	381, 487
LpnPI	CCDG	6 cut(s)	24, 52, 73, 256, 343, 394
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	152
MalI	GATC	3 cut(s)	362, 500, 504
MboI	GATC	3 cut(s)	360, 498, 502
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	1 cut(s)	360
MluCI	AATT	2 cut(s)	83, 275
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	4 cut(s)	46, 263, 461, 472
MseI	TTAA	4 cut(s)	282, 312, 414, 483
MunI	CAATTG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	3 cut(s)	360, 498, 502
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	3 cut(s)	362, 391, 489
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PspN4I	GGNNCC	3 cut(s)	362, 391, 489
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	360
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	282, 312, 414, 483
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	3 cut(s)	360, 498, 502
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	184
SchI	GAGTC	1 cut(s)	41
SetI	ASST	8 cut(s)	71, 97, 162, 310, 370, 378, 453, 483
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	83, 275
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	1 cut(s)	152
TaqI	TCGA	1 cut(s)	501
TasI	AATT	2 cut(s)	83, 275
TatI	WGTACW	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	4 cut(s)	282, 312, 414, 483
Tru9I	TTAA	4 cut(s)	282, 312, 414, 483
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	83
XspI	CTAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.