Rh1CG385000

Sorbitol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018083
Physical Location & Seq
Reverse (-)
65515364 .. 65516513
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG385000.1

Sequence Viewer

Length: 573 bp
ATGCTTGTCGCCGAGCTAATATCGGTCCAGAAACAAATGTTTCAGTCATGGGAGCAGGACCCATGCATAGAGCTTGTTACACTTCTATTTGCTCGCACTTTTGGGGCACTCAGAATTGTCATTGCAGATATGGATGATCACCGTTTATCAGTTGCAAAGACTCTTGGTGCAGATGAGATCGTGAAAGTTTCAACAAACATCCAGGATGTTGATGAAGAAGTGGTTCAGATAGGTAAAGCTATGGGAGCTGGAGTAGATGTGACCTTTGATTGCGCAGGCTTTGATAAGACCATGTCAACAGGTCTGCGTGCTACTCGTCCCGGTGGCAAAGTTTGCCCTGTGGGAATGGGTCACGATGTGATGACTCTCCCATGTACTCACTTCAACTTCTGCCAGGGTGGTAGATGTGATTGGAATTTTCCGATACAAGAACACATTTGGCGTCTATGCCTTGAGTTTTTGGGAAGTGGTATGATGGATGTGAAGCCCCCTCATAACACATCGATTTGGGTTTTCTCAAAAGGAGGTGGAAGACACCTTCGCAACCAGTGCTCGTGGAGGCAATGCCATTAA

Protein Analysis

190

Amino Acids

21.17

Weight (kDa)

6.14

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 26 - 125 7.2e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018083)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g28900
malus_domestica MD00G1006100.v1.1 MD13G1239400.v1.1 MD17G1261300.v1.1
pyrus_communis pycom01g20510 pycom07g24110
rosa_multiflora Rmu_sc0016049.1_g000005
rosa_roxburghii Rroxscaffold_4G00282120
rosa_samantha Rh1AG407500 Rh1CG385000 Rh1DG402000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 274
AcsI RAATTY 1 cut(s) 415
AcyI GRCGYC 1 cut(s) 442
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 1 cut(s) 376
AgsI TTSAA 2 cut(s) 192, 385
AjnI CCWGG 2 cut(s) 201, 393
AluBI AGCT 4 cut(s) 16, 73, 239, 248
AluI AGCT 4 cut(s) 16, 73, 239, 248
Alw21I GWGCWC 1 cut(s) 554
ApoI RAATTY 1 cut(s) 415
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 25, 58
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 2 cut(s) 25, 58
BaeGI GKGCMC 1 cut(s) 109
BauI CACGAG 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 538
Bbv12I GWGCWC 1 cut(s) 554
BccI CCATC 1 cut(s) 469
BciT130I CCWGG 2 cut(s) 203, 395
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 321
Bme1390I CCNGG 3 cut(s) 203, 321, 395
Bme18I GGWCC 2 cut(s) 25, 58
BmgT120I GGNCC 2 cut(s) 25, 58
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 3 cut(s) 203, 321, 395
BpiI GAAGAC 1 cut(s) 538
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 321
Bsa29I ATCGAT 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 4 cut(s) 237, 243, 267, 273
Bse1I ACTGG 1 cut(s) 547
Bse3DI GCAATG 2 cut(s) 120, 569
BseBI CCWGG 2 cut(s) 203, 395
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 4 cut(s) 139, 198, 211, 484
BseMI GCAATG 2 cut(s) 120, 569
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 547
BseSI GKGCMC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 189
BshVI ATCGAT 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 109, 554
Bsp143I GATC 2 cut(s) 136, 177
BspCNI CTCAG 1 cut(s) 123
BspDI ATCGAT 1 cut(s) 503
BspLI GGNNCC 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 120, 569
BsrI ACTGG 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 2 cut(s) 136, 177
BssNI GRCGYC 1 cut(s) 442
BssSI CACGAG 1 cut(s) 553
Bst2BI CACGAG 1 cut(s) 553
Bst2UI CCWGG 2 cut(s) 203, 395
Bst4CI ACNGT 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 442
BstAPI GCANNNNNTGC 2 cut(s) 333, 549
BstC8I GCNNGC 3 cut(s) 94, 277, 309
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 4 cut(s) 139, 198, 211, 484
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 2 cut(s) 139, 180
BstMBI GATC 2 cut(s) 136, 177
BstMWI GCNNNNNNNGC 3 cut(s) 245, 333, 549
BstNI CCWGG 2 cut(s) 203, 395
BstSCI CCNGG 3 cut(s) 201, 319, 393
BstSLI GKGCMC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 538
Bsu15I ATCGAT 1 cut(s) 503
BsuTUI ATCGAT 1 cut(s) 503
BtsCI GGATG 4 cut(s) 139, 198, 211, 484
BtsIMutI CAGTG 1 cut(s) 554
Cac8I GCNNGC 3 cut(s) 94, 277, 309
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 25, 58
ClaI ATCGAT 1 cut(s) 503
CseI GACGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 375
CviAII CATG 4 cut(s) 48, 63, 292, 372
CviJI RGCY 6 cut(s) 16, 73, 239, 248, 279, 487
CviKI_1 RGCY 6 cut(s) 16, 73, 239, 248, 279, 487
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 138, 179
DpnII GATC 2 cut(s) 136, 177
DraIII CACNNNGTG 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 25, 58
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 201, 393
EcoT22I ATGCAT 1 cut(s) 68
FaeI CATG 4 cut(s) 51, 66, 295, 375
FaqI GGGAC 1 cut(s) 303
FatI CATG 4 cut(s) 47, 62, 291, 371
FbaI TGATCA 1 cut(s) 136
FokI GGATG 4 cut(s) 146, 185, 218, 491
FspI TGCGCA 1 cut(s) 274
GlaI GCGC 1 cut(s) 274
GsuI CTGGAG 1 cut(s) 270
HapII CCGG 1 cut(s) 321
HgaI GACGC 1 cut(s) 431
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 4 cut(s) 51, 66, 295, 375
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 160, 364
HpaII CCGG 1 cut(s) 321
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 3 cut(s) 113, 228, 423
Hpy188III TCNNGA 3 cut(s) 28, 181, 353
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 66, 125, 155, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 333, 549
HpyF3I CTNAG 1 cut(s) 110
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 4 cut(s) 51, 66, 295, 375
HspAI GCGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 136, 177
LmnI GCTCC 2 cut(s) 52, 245
MaeIII GTNAC 3 cut(s) 76, 259, 350
MalI GATC 2 cut(s) 138, 179
MboI GATC 2 cut(s) 136, 177
MboII GAAGA 2 cut(s) 227, 543
MhlI GDGCHC 2 cut(s) 109, 554
MluCI AATT 2 cut(s) 114, 415
MlyI GAGTC 2 cut(s) 154, 358
MnlI CCTC 3 cut(s) 501, 518, 552
Mph1103I ATGCAT 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 571
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 3 cut(s) 203, 321, 395
MvaI CCWGG 2 cut(s) 203, 395
MwoI GCNNNNNNNGC 3 cut(s) 245, 333, 549
NciI CCSGG 1 cut(s) 321
NdeII GATC 2 cut(s) 136, 177
NlaIII CATG 4 cut(s) 51, 66, 295, 375
NlaIV GGNNCC 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 2 cut(s) 259, 350
NsbI TGCGCA 1 cut(s) 274
NsiI ATGCAT 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 222
PflFI GACNNNGTC 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 201
PleI GAGTC 2 cut(s) 154, 358
PpsI GAGTC 2 cut(s) 154, 358
PpuMI RGGWCCY 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 201, 393
PspGI CCWGG 2 cut(s) 201, 393
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 25, 58
PspPPI RGGWCCY 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 571
Sau3AI GATC 2 cut(s) 136, 177
Sau96I GGNCC 2 cut(s) 25, 58
SchI GAGTC 2 cut(s) 154, 358
ScrFI CCNGG 3 cut(s) 203, 321, 395
SduI GDGCHC 2 cut(s) 109, 554
SetI ASST 9 cut(s) 18, 75, 235, 241, 250, 266, 304, 529, 540
SinI GGWCC 2 cut(s) 25, 58
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 2 cut(s) 114, 415
StyD4I CCNGG 3 cut(s) 201, 319, 393
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 503
TaqII GACCGA 1 cut(s) 13
TasI AATT 2 cut(s) 114, 415
TatI WGTACW 1 cut(s) 374
Tru1I TTAA 1 cut(s) 571
Tru9I TTAA 1 cut(s) 571
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 2 cut(s) 259, 350
Tsp45I GTSAC 2 cut(s) 259, 350
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 1 cut(s) 554
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 25, 58
XapI RAATTY 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.