Rroxscaffold_4G00282120

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
4235778 .. 4236205
428 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00282120.1

Sequence Viewer

Length: 180 bp
ATGTGTGAGGGAGGGACCATGGAGGAGAACATGGCTGCTTGGCTTGTTGGTATCAACAACCTCAAGATTCAACCTTTCAAGCTCCCTGATCTTGGACTTCATGATGTTAGGATTCGGATGAAGGCTGTTGGGATATGTGGGAGTGATGTTTGTAAGAATATAAAGTGGACTTATCACTAG

Protein Analysis

59

Amino Acids

6.65

Weight (kDa)

7.74

Isoelectric Point (pI)

21.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018083)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 2 cut(s) 71, 79
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 15
AvaII GGWCC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 22
BfaI CTAG 1 cut(s) 178
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 22
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 123
CciI TCATGA 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 15
CviAII CATG 3 cut(s) 19, 31, 101
CviJI RGCY 4 cut(s) 35, 43, 82, 125
CviKI_1 RGCY 4 cut(s) 35, 43, 82, 125
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 3 cut(s) 22, 34, 104
FaiI YATR 5 cut(s) 20, 32, 102, 136, 161
FaqI GGGAC 1 cut(s) 28
FatI CATG 3 cut(s) 18, 30, 100
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 178
GluI GCNGC 1 cut(s) 36
Hin1II CATG 3 cut(s) 22, 34, 104
HinfI GANTC 2 cut(s) 67, 112
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 64, 101
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 115
Hsp92II CATG 3 cut(s) 22, 34, 104
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 1 cut(s) 99
Lsp1109I GCAGC 1 cut(s) 22
MaeI CTAG 1 cut(s) 178
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MnlI CCTC 3 cut(s) 5, 16, 71
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 22, 34, 104
NlaIV GGNNCC 1 cut(s) 16
PagI TCATGA 1 cut(s) 100
PfeI GAWTC 2 cut(s) 67, 112
PkrI GCNGC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 15
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 15
SetI ASST 3 cut(s) 63, 76, 84
SgeI CNNG 9 cut(s) 31, 43, 51, 56, 76, 91, 98, 104, 113
SinI GGWCC 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SspMI CTAG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 18
TfiI GAWTC 2 cut(s) 67, 112
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 89, 134
VpaK11BI GGWCC 1 cut(s) 15
XspI CTAG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.