MD13G1239400.v1.1

L-arabinose catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0018083
Physical Location & Seq
Reverse (-)
24454330 .. 24454733
404 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1239400.v1.1.491

Sequence Viewer

Length: 264 bp
ATGGATATAGCTGCTTCTGCTTCTGCTTCTGCTGGTGGCGGTGGTGGACCTGGTGGTGCTGCTGATGTCCACCATTCTCGAGAAAAGTATGATGTGTTTAACACCATGGCTGCTTGGCTAGTTGATGTTAACACGATCAAGATCCTACCTTTCAAGCTCCCTACTAATGGACCAAATGATGTTCGAATTCGAATTAAGGCTGTTGGCATTTACGGAAGTGATGTTCACTACCTCAAGACCATGAAATGTGCAGATTTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00051 ko01100 map00040 map00051 map01100
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

88

Amino Acids

9.21

Weight (kDa)

6.82

Isoelectric Point (pI)

18.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018083)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g28900
malus_domestica MD00G1006100.v1.1 MD13G1239400.v1.1 MD17G1261300.v1.1
pyrus_communis pycom01g20510 pycom07g24110
rosa_multiflora Rmu_sc0016049.1_g000005
rosa_roxburghii Rroxscaffold_4G00282120
rosa_samantha Rh1AG407500 Rh1CG385000 Rh1DG402000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
AluBI AGCT 2 cut(s) 11, 157
AluI AGCT 2 cut(s) 11, 157
AlwI GGATC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 11, 59, 110
ApoI RAATTY 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 47, 170
AsuII TTCGAA 2 cut(s) 184, 190
AvaI CYCGRG 1 cut(s) 78
AvaII GGWCC 2 cut(s) 47, 170
BbvI GCAGC 2 cut(s) 46, 97
BciT130I CCWGG 1 cut(s) 51
BfaI CTAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 12, 60, 111
BlsI GCNGC 3 cut(s) 13, 61, 112
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 47, 170
BmeT110I CYCGRG 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 47, 170
BmrFI CCNGG 1 cut(s) 51
Bpu14I TTCGAA 2 cut(s) 184, 190
BpuEI CTTGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 46, 97
BsiHKCI CYCGRG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 78
Bsp119I TTCGAA 2 cut(s) 184, 190
Bsp143I GATC 2 cut(s) 135, 141
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 136
BspT104I TTCGAA 2 cut(s) 184, 190
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 135, 141
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 51
BstBI TTCGAA 2 cut(s) 184, 190
BstDSI CCRYGG 1 cut(s) 105
BstKTI GATC 2 cut(s) 138, 144
BstMBI GATC 2 cut(s) 135, 141
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 46, 97
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 47, 170
CsiI ACCWGGT 1 cut(s) 49
CviAII CATG 2 cut(s) 106, 241
CviJI RGCY 5 cut(s) 11, 110, 118, 157, 200
CviKI_1 RGCY 5 cut(s) 11, 110, 118, 157, 200
DpnI GATC 2 cut(s) 137, 143
DpnII GATC 2 cut(s) 135, 141
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 47, 170
Eco88I CYCGRG 1 cut(s) 78
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 109, 244
FaiI YATR 4 cut(s) 8, 90, 107, 242
FatI CATG 2 cut(s) 105, 240
Fnu4HI GCNGC 3 cut(s) 12, 60, 111
Fsp4HI GCNGC 3 cut(s) 12, 60, 111
FspBI CTAG 1 cut(s) 119
GluI GCNGC 3 cut(s) 12, 60, 111
Hin1II CATG 2 cut(s) 109, 244
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HpaI GTTAAC 1 cut(s) 130
Hpy166II GTNNAC 4 cut(s) 47, 70, 130, 226
Hpy188III TCNNGA 4 cut(s) 78, 80, 139, 235
Hpy8I GTNNAC 4 cut(s) 47, 70, 130, 226
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 2 cut(s) 109, 244
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 135, 141
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 3 cut(s) 18, 36, 63
Lsp1109I GCAGC 2 cut(s) 46, 97
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 1 cut(s) 119
MalI GATC 2 cut(s) 137, 143
MboI GATC 2 cut(s) 135, 141
MflI RGATCY 1 cut(s) 141
MluCI AATT 2 cut(s) 186, 192
MnlI CCTC 1 cut(s) 242
MseI TTAA 3 cut(s) 99, 129, 195
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 105
NdeII GATC 2 cut(s) 135, 141
NlaIII CATG 2 cut(s) 109, 244
NspV TTCGAA 2 cut(s) 184, 190
PaeR7I CTCGAG 1 cut(s) 78
PkrI GCNGC 3 cut(s) 13, 61, 112
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspPI GGNCC 2 cut(s) 47, 170
PsuI RGATCY 1 cut(s) 141
SaqAI TTAA 3 cut(s) 99, 129, 195
SatI GCNGC 3 cut(s) 12, 60, 111
Sau3AI GATC 2 cut(s) 135, 141
Sau96I GGNCC 2 cut(s) 47, 170
ScrFI CCNGG 1 cut(s) 51
SetI ASST 5 cut(s) 13, 52, 151, 159, 234
SexAI ACCWGGT 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 78
SfuI TTCGAA 2 cut(s) 184, 190
SinI GGWCC 2 cut(s) 47, 170
SlaI CTCGAG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 78, 233
SmoI CTYRAG 2 cut(s) 78, 233
Sse9I AATT 2 cut(s) 186, 192
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 3 cut(s) 79, 184, 190
TasI AATT 2 cut(s) 186, 192
Tru1I TTAA 3 cut(s) 99, 129, 195
Tru9I TTAA 3 cut(s) 99, 129, 195
TseI GCWGC 3 cut(s) 11, 59, 110
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 228
VpaK11BI GGWCC 2 cut(s) 47, 170
XapI RAATTY 1 cut(s) 186
XhoI CTCGAG 1 cut(s) 78
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.