Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010886

Physical Location & Seq

Genomic Coordinates Reverse (-)

22279798 .. 22281428

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAACATCTCAGCAGCCTCTCTCCATTGAAAGCTTTTCATACAGTTGGTTAGTGAATCTCAAGCCTCCTTCTTTTGAAAGCCTTGACAACTCCCTTAGGACTTCGCTAGATGCATCCGATGAAGCCTCCTTCATCGAGATGGACCCAACAATGCCACCCTCTCAGAGATTCTTTAGGATTTCCCAGCAGGATTTCAAATTCGACTCATCACAGTCTCCTCTCTCTTCCCTTGTTCATGCCGATGAGCTCATTTCCAATGGTTATCTTTTGCCACTTTCGGTGGATGATCCATTGAAGAACATGGAGTCATACGACGATTACTATGATCAAGCCTCGGATTCTAGTACTGCAAATCTTCCGGTCTCTTCATCAAAAGAAGCTTCTCCGACAGATAAGAGTACTGATGCAGATTGCTCTAATTCCATGAGAAGGTGCAGAAGATTATCGAAAAGAATATTTGAGAAGTACTTGGATTTTCTCAAACCCTTGTACAAAAGGATTAGAGGGGGACATAAAGCGAACCCTAAAGCAGCTGGGAATCATGTCGATAAAAGGTTCCATTCAGCAAAGAACAGCAGGGTGTATTCATCAGAAACTGCATCTCCGCGAATAAGTGTAGCCTATTCTGCTCCCGATGATTGGCGAAGGTCCTGTGATTCCGAGAGCTCTATCTATGAGGCAGTTCTTCATTGCAAAAGATCGATAGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.93

Weight (kDa)

5.78

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52900
fragaria_vesca	FvH4_7g30650
malus_domestica	MD01G1211600.v1.1 MD07G1282200.v1.1
prunus_persica	Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1
pyrus_communis	pycom01g22210 pycom07g25610
rosa_chinensis	RchiOBHm_Chr1g0379591
rosa_laevigata	RLG00000026392
rosa_multiflora	Rmu_sc0011286.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280060
rosa_rugosa	Rorug01G0413100
rosa_samantha	Rh1AG436300 Rh1BG393300 Rh1CG406100 Rh1DG424200
rosa_wichuraiana	Rw1G038090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	610
AciI	CCGC	1 cut(s)	608
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	4 cut(s)	349, 403, 470, 494
AfiI	CCNNNNNNNGG	2 cut(s)	432, 642
AgsI	TTSAA	4 cut(s)	32, 80, 199, 298
AluBI	AGCT	5 cut(s)	36, 250, 383, 536, 669
AluI	AGCT	5 cut(s)	36, 250, 383, 536, 669
Alw21I	GWGCWC	2 cut(s)	252, 671
Alw26I	GTCTC	2 cut(s)	222, 370
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	16, 533
ApoI	RAATTY	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	145, 651
AvaII	GGWCC	2 cut(s)	145, 651
AxyI	CCTNAGG	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	252, 671
Bbv12I	GWGCWC	2 cut(s)	252, 671
BbvI	GCAGC	2 cut(s)	28, 545
BccI	CCATC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	222, 370
BfaI	CTAG	2 cut(s)	110, 345
BisI	GCNGC	2 cut(s)	17, 534
BlsI	GCNGC	2 cut(s)	18, 535
BmcAI	AGTACT	3 cut(s)	349, 403, 470
Bme18I	GGWCC	2 cut(s)	145, 651
BmgT120I	GGNCC	2 cut(s)	145, 651
BmiI	GGNNCC	2 cut(s)	147, 560
BmsI	GCATC	4 cut(s)	103, 125, 397, 611
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	704
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 642
Bse21I	CCTNAGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	691
BseCI	ATCGAT	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	116, 292
BseLI	CCNNNNNNNGG	2 cut(s)	432, 642
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	2 cut(s)	26, 179
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	28, 545
BseYI	CCCAGC	2 cut(s)	186, 536
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	610
BshVI	ATCGAT	1 cut(s)	704
BsiHKAI	GWGCWC	2 cut(s)	252, 671
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	432, 642
BsmAI	GTCTC	2 cut(s)	222, 370
BsmFI	GGGAC	1 cut(s)	525
Bso31I	GGTCTC	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	252, 671
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	3 cut(s)	289, 328, 701
BspACI	CCGC	1 cut(s)	608
BspCNI	CTCAG	2 cut(s)	25, 178
BspDI	ATCGAT	1 cut(s)	704
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	147, 560
BspPI	GGATC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	691
BsrGI	TGTACA	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	3 cut(s)	289, 328, 701
Bst4CI	ACNGT	2 cut(s)	47, 216
Bst6I	CTCTTC	2 cut(s)	232, 373
BstAUI	TGTACA	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	12, 98, 165
BstF5I	GGATG	2 cut(s)	116, 292
BstFNI	CGCG	1 cut(s)	610
BstKTI	GATC	3 cut(s)	292, 331, 704
BstMAI	GTCTC	2 cut(s)	222, 370
BstMBI	GATC	3 cut(s)	289, 328, 701
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	28, 545
Bsu15I	ATCGAT	1 cut(s)	704
Bsu36I	CCTNAGG	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	704
BtsCI	GGATG	2 cut(s)	116, 292
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	145, 651
ClaI	ATCGAT	1 cut(s)	704
Csp6I	GTAC	4 cut(s)	348, 402, 469, 493
CviAII	CATG	4 cut(s)	239, 304, 427, 545
CviQI	GTAC	4 cut(s)	348, 402, 469, 493
DdeI	CTNAG	3 cut(s)	12, 98, 165
DpnI	GATC	3 cut(s)	291, 330, 703
DpnII	GATC	3 cut(s)	289, 328, 701
Eam1104I	CTCTTC	2 cut(s)	232, 373
EarI	CTCTTC	2 cut(s)	232, 373
Ecl136II	GAGCTC	2 cut(s)	250, 669
Eco24I	GRGCYC	2 cut(s)	252, 671
Eco31I	GGTCTC	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	145, 651
Eco53kI	GAGCTC	2 cut(s)	250, 669
Eco81I	CCTNAGG	1 cut(s)	98
EcoICRI	GAGCTC	2 cut(s)	250, 669
EcoO109I	RGGNCCY	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	2 cut(s)	252, 671
FaeI	CATG	4 cut(s)	242, 307, 430, 548
FaiI	YATR	9 cut(s)	43, 240, 305, 313, 327, 428, 516, 546, 678
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	4 cut(s)	238, 303, 426, 544
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	17, 534
FokI	GGATG	2 cut(s)	103, 299
FriOI	GRGCYC	2 cut(s)	252, 671
Fsp4HI	GCNGC	2 cut(s)	17, 534
FspBI	CTAG	2 cut(s)	110, 345
GluI	GCNGC	2 cut(s)	17, 534
GsaI	CCCAGC	2 cut(s)	190, 540
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	4 cut(s)	242, 307, 430, 548
HindIII	AAGCTT	2 cut(s)	34, 381
HinfI	GANTC	7 cut(s)	58, 171, 206, 308, 341, 541, 659
HpaII	CCGG	1 cut(s)	362
Hpy188I	TCNGA	6 cut(s)	121, 168, 340, 390, 595, 664
Hpy188III	TCNNGA	2 cut(s)	139, 635
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	81, 142, 426, 642
HpyCH4III	ACNGT	2 cut(s)	47, 216
HpyCH4V	TGCA	6 cut(s)	116, 353, 410, 438, 602, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	3 cut(s)	12, 98, 165
Hsp92II	CATG	4 cut(s)	242, 307, 430, 548
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	289, 328, 701
LmnI	GCTCC	1 cut(s)	637
LpnPI	CCDG	6 cut(s)	176, 200, 375, 522, 565, 667
Lsp1109I	GCAGC	2 cut(s)	28, 545
LweI	GCATC	4 cut(s)	103, 125, 397, 611
MaeI	CTAG	2 cut(s)	110, 345
MalI	GATC	3 cut(s)	291, 330, 703
MboI	GATC	3 cut(s)	289, 328, 701
MboII	GAAGA	6 cut(s)	219, 310, 350, 360, 453, 680
MhlI	GDGCHC	2 cut(s)	252, 671
MluCI	AATT	2 cut(s)	200, 421
MlyI	GAGTC	2 cut(s)	200, 317
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	8 cut(s)	30, 78, 139, 172, 231, 346, 500, 673
Mph1103I	ATGCAT	1 cut(s)	118
MslI	CAYNNNNRTG	2 cut(s)	140, 243
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	3 cut(s)	289, 328, 701
NlaIII	CATG	4 cut(s)	242, 307, 430, 548
NlaIV	GGNNCC	2 cut(s)	147, 560
NsiI	ATGCAT	1 cut(s)	118
PfeI	GAWTC	5 cut(s)	58, 171, 341, 541, 659
PkrI	GCNGC	2 cut(s)	18, 535
PleI	GAGTC	2 cut(s)	200, 316
PpsI	GAGTC	2 cut(s)	200, 316
PpuMI	RGGWCCY	1 cut(s)	651
Psp124BI	GAGCTC	2 cut(s)	252, 671
Psp5II	RGGWCCY	1 cut(s)	651
PspFI	CCCAGC	2 cut(s)	186, 536
PspN4I	GGNNCC	2 cut(s)	147, 560
PspPI	GGNCC	2 cut(s)	145, 651
PspPPI	RGGWCCY	1 cut(s)	651
PstNI	CAGNNNCTG	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	4 cut(s)	349, 403, 470, 494
RsaNI	GTAC	4 cut(s)	348, 402, 469, 493
RseI	CAYNNNNRTG	2 cut(s)	140, 243
SacI	GAGCTC	2 cut(s)	252, 671
SatI	GCNGC	2 cut(s)	17, 534
Sau3AI	GATC	3 cut(s)	289, 328, 701
Sau96I	GGNCC	2 cut(s)	145, 651
ScaI	AGTACT	3 cut(s)	349, 403, 470
SchI	GAGTC	2 cut(s)	200, 317
SduI	GDGCHC	2 cut(s)	252, 671
SetI	ASST	8 cut(s)	38, 252, 385, 437, 538, 560, 653, 671
SfaNI	GCATC	4 cut(s)	103, 125, 397, 611
SinI	GGWCC	2 cut(s)	145, 651
SmiMI	CAYNNNNRTG	2 cut(s)	140, 243
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	200, 421
SsiI	CCGC	1 cut(s)	608
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	2 cut(s)	110, 345
SstI	GAGCTC	2 cut(s)	252, 671
TaaI	ACNGT	2 cut(s)	47, 216
TaqI	TCGA	5 cut(s)	138, 204, 449, 549, 704
TasI	AATT	2 cut(s)	200, 421
TatI	WGTACW	4 cut(s)	347, 401, 468, 492
TfiI	GAWTC	5 cut(s)	58, 171, 341, 541, 659
TseI	GCWGC	2 cut(s)	16, 533
TspDTI	ATGAA	7 cut(s)	30, 124, 138, 227, 360, 579, 680
VpaK11BI	GGWCC	2 cut(s)	145, 651
XapI	RAATTY	1 cut(s)	200
XspI	CTAG	2 cut(s)	110, 345
ZrmI	AGTACT	3 cut(s)	349, 403, 470
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.