Rorug01G0413100

membrane-associated kinase regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000140
Physical Location & Seq
Forward (+)
51773764 .. 51776328
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0413100.1

Sequence Viewer

Length: 789 bp
ATGCATAAAGATAAAGGGGATCATCATCATCATCTACGAGGTGTGGTTAGATCACATTCTGAACCGGCTTTGAAAGACAAATCTTCATACACTCCCTCCACGTCATTTGCTGCAATTGGCCATTACAATGACAACAATCTATTCTTTGAAGAGGAGGAATCTGAAACAAGTTGCGAAGATTCAGACGTTAGACGTTTTGATGAAGAAGAAGATTCATCTTGGATATCATGGTTCTGCAATCAAAAAGGGAATGAATTCTTCTGTGAAGTTGACGACGACTATATCCTAGACGATTTCAACCGCTCTGGTTTGAGAAATCAAGTGCCATTCTATGATTACGCATTGGATATGATTTTGGACGTTGAGTCTTCTGATATCGATGGTACCTTACATGATCATGAGCAGAATAACTTGATCGAATCAGCGGCAGAGATGCTCTACGGTTTGATTCATGCCAGATACATAACAACTACTAAAGGAATTTCTGCAATGTTGGAGAAGTACAGGAACTATGATTTTGGTAGATGTCCAAGAGTTAACTGCAACAAACAAAGATGTCTACCTGTAGGTGAGTCTGACATTCCAAGATTGACTACCGTCAAAATATACTGTCCCAGGTGTGAAGATATCTACTCTCCACAATCCAGACACCAAGAACAAATCGATGGGGCATATTTTGGAACCACGTTTCCTCACCTGTTTTTCTTGACTTATGGGCATCTTAAGCCAGAGAAGGCAAGTCAGAGCTATGCTCCAAGAATATTTGGCTTCAAAGTCCACAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

30.47

Weight (kDa)

5.33

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CK_II_beta PF01214 73 - 258 2.6e-76 Casein kinase II regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 383
AccBSI CCGCTC 1 cut(s) 303
AccI GTMKAC 1 cut(s) 559
AciI CCGC 2 cut(s) 301, 425
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 2 cut(s) 254, 480
AfaI GTAC 2 cut(s) 385, 503
AflII CTTAAG 1 cut(s) 722
AgsI TTSAA 4 cut(s) 73, 149, 298, 772
AhdI GACNNNNNGTC 1 cut(s) 364
AjiI CACGTC 1 cut(s) 102
AjnI CCWGG 1 cut(s) 614
AloI GAACNNNNNNTCC 2 cut(s) 673, 705
AluBI AGCT 1 cut(s) 747
AluI AGCT 1 cut(s) 747
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 254, 480
Asp700I GAANNNNTTC 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 581, 686
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 97
BccI CCATC 2 cut(s) 374, 659
BciT130I CCWGG 1 cut(s) 616
BclI TGATCA 1 cut(s) 394
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 722
BisI GCNGC 2 cut(s) 111, 426
BlsI GCNGC 2 cut(s) 112, 427
Bme1390I CCNGG 1 cut(s) 616
BmeRI GACNNNNNGTC 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 385, 682
BmrFI CCNGG 1 cut(s) 616
BmsI GCATC 2 cut(s) 423, 727
BoxI GACNNNNGTC 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 736, 768
Bsa29I ATCGAT 2 cut(s) 378, 663
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 614
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse118I RCCGGY 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 495
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 1 cut(s) 616
BseCI ATCGAT 2 cut(s) 378, 663
BseDI CCNNGG 1 cut(s) 614
BseJI GATNNNNATC 1 cut(s) 24
BseMI GCAATG 1 cut(s) 495
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 383
BshVI ATCGAT 2 cut(s) 378, 663
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 597
BsmFI GGGAC 1 cut(s) 597
BsnI GGCC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 19, 50, 394, 414
BspACI CCGC 2 cut(s) 301, 425
BspANI GGCC 1 cut(s) 120
BspDI ATCGAT 2 cut(s) 378, 663
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 385, 682
BspPI GGATC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 383
BspTI CTTAAG 1 cut(s) 722
BsrBI CCGCTC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 4 cut(s) 19, 50, 394, 414
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 3 cut(s) 443, 598, 611
Bst6I CTCTTC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 722
BstKTI GATC 4 cut(s) 22, 53, 397, 417
BstMBI GATC 4 cut(s) 19, 50, 394, 414
BstMWI GCNNNNNNNGC 1 cut(s) 724
BstNI CCWGG 1 cut(s) 616
BstPAI GACNNNNGTC 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 360
Bsu15I ATCGAT 2 cut(s) 378, 663
BsuRI GGCC 1 cut(s) 120
BsuTUI ATCGAT 2 cut(s) 378, 663
BtrI CACGTC 1 cut(s) 102
CciI TCATGA 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 64
ClaI ATCGAT 2 cut(s) 378, 663
Csp6I GTAC 2 cut(s) 384, 502
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 4 cut(s) 228, 392, 398, 452
CviJI RGCY 5 cut(s) 68, 120, 727, 747, 768
CviKI_1 RGCY 5 cut(s) 68, 120, 727, 747, 768
CviQI GTAC 2 cut(s) 384, 502
DpnI GATC 4 cut(s) 21, 52, 396, 416
DpnII GATC 4 cut(s) 19, 50, 394, 414
DriI GACNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 144
Eco32I GATATC 3 cut(s) 225, 376, 628
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 614
EcoRV GATATC 3 cut(s) 225, 376, 628
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 231, 395, 401, 455
FaqI GGGAC 1 cut(s) 597
FatI CATG 4 cut(s) 227, 391, 397, 451
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 111, 426
Fsp4HI GCNGC 2 cut(s) 111, 426
FspBI CTAG 1 cut(s) 287
GluI GCNGC 2 cut(s) 111, 426
HaeIII GGCC 1 cut(s) 120
HapII CCGG 1 cut(s) 65
Hin1II CATG 4 cut(s) 231, 395, 401, 455
HincII GTYRAC 2 cut(s) 271, 538
HindII GTYRAC 2 cut(s) 271, 538
HinfI GANTC 7 cut(s) 158, 179, 212, 365, 419, 448, 572
HpaI GTTAAC 1 cut(s) 538
HpaII CCGG 1 cut(s) 65
HphI GGTGA 2 cut(s) 581, 686
Hpy166II GTNNAC 4 cut(s) 271, 538, 560, 778
Hpy188I TCNGA 6 cut(s) 61, 163, 184, 373, 577, 744
Hpy188III TCNNGA 3 cut(s) 398, 645, 706
Hpy8I GTNNAC 4 cut(s) 271, 538, 560, 778
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 727
HpyCH4III ACNGT 3 cut(s) 443, 598, 611
HpyCH4IV ACGT 5 cut(s) 101, 186, 193, 360, 686
HpyCH4V TGCA 5 cut(s) 4, 113, 237, 488, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 724
HpySE526I ACGT 5 cut(s) 101, 186, 193, 360, 686
Hsp92II CATG 4 cut(s) 231, 395, 401, 455
KpnI GGTACC 1 cut(s) 387
Ksp22I TGATCA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 538
Kzo9I GATC 4 cut(s) 19, 50, 394, 414
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 423, 727
MaeI CTAG 1 cut(s) 287
MaeII ACGT 5 cut(s) 101, 186, 193, 360, 686
MalI GATC 4 cut(s) 21, 52, 396, 416
MbiI CCGCTC 1 cut(s) 303
MboI GATC 4 cut(s) 19, 50, 394, 414
MboII GAAGA 9 cut(s) 75, 161, 188, 215, 218, 221, 250, 360, 635
MfeI CAATTG 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 3 cut(s) 114, 254, 480
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 2 cut(s) 374, 581
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 5 cut(s) 32, 106, 145, 148, 702
Mox20I TGGCCA 1 cut(s) 120
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 254
MscI TGGCCA 1 cut(s) 120
MseI TTAA 2 cut(s) 537, 723
MslI CAYNNNNRTG 2 cut(s) 126, 396
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 722
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 616
MunI CAATTG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 724
NdeII GATC 4 cut(s) 19, 50, 394, 414
NlaIII CATG 4 cut(s) 231, 395, 401, 455
NlaIV GGNNCC 2 cut(s) 385, 682
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 5 cut(s) 158, 179, 212, 419, 448
PkrI GCNGC 2 cut(s) 112, 427
PleI GAGTC 2 cut(s) 373, 580
PpsI GAGTC 2 cut(s) 373, 580
PshAI GACNNNNGTC 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 614
PspGI CCWGG 1 cut(s) 614
PspN4I GGNNCC 2 cut(s) 385, 682
RsaI GTAC 2 cut(s) 385, 503
RsaNI GTAC 2 cut(s) 384, 502
RseI CAYNNNNRTG 2 cut(s) 126, 396
SaqAI TTAA 2 cut(s) 537, 723
SatI GCNGC 2 cut(s) 111, 426
Sau3AI GATC 4 cut(s) 19, 50, 394, 414
SchI GAGTC 2 cut(s) 374, 581
ScrFI CCNGG 1 cut(s) 616
SfaNI GCATC 2 cut(s) 423, 727
SfcI CTRYAG 1 cut(s) 564
SmiMI CAYNNNNRTG 2 cut(s) 126, 396
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
Sse9I AATT 3 cut(s) 114, 254, 480
SsiI CCGC 2 cut(s) 301, 425
SspI AATATT 1 cut(s) 762
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 614
TaaI ACNGT 3 cut(s) 443, 598, 611
TaiI ACGT 5 cut(s) 104, 189, 196, 363, 689
TaqI TCGA 3 cut(s) 378, 417, 663
TasI AATT 3 cut(s) 114, 254, 480
TatI WGTACW 1 cut(s) 501
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 5 cut(s) 158, 179, 212, 419, 448
Tru1I TTAA 2 cut(s) 537, 723
Tru9I TTAA 2 cut(s) 537, 723
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 5 cut(s) 75, 204, 216, 267, 440
Vha464I CTTAAG 1 cut(s) 722
XapI RAATTY 2 cut(s) 254, 480
XmiI GTMKAC 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.