Rh5DG487500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000140
Physical Location & Seq
Forward (+)
76665395 .. 76668595
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG487500.1

Sequence Viewer

Length: 1383 bp
ATGGATGCAAGTTCTCGAATGGTACAATATAAAGAGCAGAAGTTGGATGGAGGAGAAGTGATGATAGGAGGCAGCAAGAGTTTAAGCAATTTACCGGATGTGCTTATTGTAAAAATTCTCTCCCTGCTTCCAACCAAAGATGCTATCAGGACAAGCATTCTATCTAAAAGATGGGAATACATATGGAAATCACTTCCCAATCTCAAGTTTATTCAATGGAAGTTTGAGAATAAGAGAACTTCCTTGGTGAATGCTGTGGAAAGAGCGCTTATTCTTCGTGGCCCTGCTGATATTAAAGAGTTCACTCTTTCATTTGAAGTGTTGGGAGATGCATTACGTGTTAATACGTGGATCTCTGCTGTATTACAGCGCAATGTTGAAGATCTTTCTTTAGCTCTGCACAGTTTCAATGACCCAGTTTCTTTGCCTCGTTCTTTATTTACGTCTGCGACATTGAAAGTGCTCCTGCTGGAACTGCCCTGTATTTTCAAAGTTCCTTCTACTATTTGTTTCTCAAGCCTAAGGAGCTTAACTCTTTCATCCGTGGTGTTTTCTGACGACTACTCGGCCCAGCAGTTGTTTTCTGGTTGCTCAGTTCTAGAGGAAATATTTCTATATGGTTGCAATTGGGCAAATCTCAACTTTGTGAGTATTTCTGCTCCGAAGCTTTTGAGGTTTACCATAGATGAAGGGGATTCACAAATTTTAAGAGGTTCAGATGGTTGTCAGATTATGGTACTTGGAGTTAGACTCGCATATTTTTCTTACACAGGTGAGTTCCTAGATGACTATTGCTTTTATAACTCATCAGCAAATGAAGCTCTGATATCTCTTAATTCTATCAAGAGGGTCCAACATGTTAGTTACCGGTTGTATAAGCTTCTTAATGGGCTCTCTAGCGTGAAGCACCTAACCATCTGTGATACGTCCTTTGAGGTGGTTCAGACTAATGCTTCAGAACATCTTGTGCCCTCGTTCAATAATCTAACCACCTTGATATTTGAACGAGTGGAAGTAGATCTCGGTTGCAAAGGACTATTGACCTTTCTTCAAAATTGTCCTTGTCTTAAGTATCTTATATTCTGTGAGGGGATTGGTCTGTACTCAGATGATGCAAAAGATGATGGGATGTTGGAGCCACTGCCTCCATGTTTCTTGAATAGTCTTGAAGAGATTGATGTCTTAGAATTTTGTGGAGATGAGGATGAGCTTCATGCAATGAAGGTCTTGCTAAAATGTGCAATGGTCTTGAAAAAGGTGACTATTAATTGGTGCAGTGGTGTTCAAGTGGAACCAGAAACGATGAAGGACATTAACAAACAGTTATTAGATCTCCCCAGAGGGTCAGAAAACTGCAAAGTTGTTTGTTTGTGCCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

460

Amino Acids

51.64

Weight (kDa)

5.3

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 68 9.7e-10 F-box domain
LRR_At1g61320_AtMIF1 PF23622 97 - 427 1.1e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 115 - 223 2.1e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 3 cut(s) 114, 702, 1187
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 3 cut(s) 24, 738, 1103
AfeI AGCGCT 1 cut(s) 267
AflII CTTAAG 1 cut(s) 1067
AflIII ACRYGT 2 cut(s) 337, 856
AgeI ACCGGT 1 cut(s) 867
AluBI AGCT 6 cut(s) 395, 528, 667, 821, 880, 1210
AluI AGCT 6 cut(s) 395, 528, 667, 821, 880, 1210
Alw21I GWGCWC 1 cut(s) 465
AlwI GGATC 1 cut(s) 359
Aor51HI AGCGCT 1 cut(s) 267
AoxI GGCC 2 cut(s) 280, 567
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 3 cut(s) 114, 702, 1187
AseI ATTAAT 1 cut(s) 1266
AsiGI ACCGGT 1 cut(s) 867
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 2 cut(s) 268, 372
AspS9I GGNCC 3 cut(s) 281, 568, 850
AsuHPI GGTGA 3 cut(s) 259, 785, 1270
AvaII GGWCC 1 cut(s) 850
AxyI CCTNAGG 1 cut(s) 521
BaeGI GKGCMC 2 cut(s) 972, 1376
BanII GRGCYC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 84
BccI CCATC 5 cut(s) 41, 165, 713, 923, 1118
BfaI CTAG 3 cut(s) 599, 782, 897
BfoI RGCGCY 1 cut(s) 269
BfrI CTTAAG 1 cut(s) 1067
BglII AGATCT 3 cut(s) 382, 1018, 1330
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 850
BmgT120I GGNCC 3 cut(s) 281, 568, 850
BmiI GGNNCC 3 cut(s) 851, 1137, 1293
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 3 cut(s) 130, 319, 1102
BmuI ACTGGG 1 cut(s) 410
BplI GAGNNNNNCTC 4 cut(s) 517, 549, 735, 767
BpuEI CTTGAG 2 cut(s) 188, 499
BsaAI YACGTR 2 cut(s) 338, 348
BsaJI CCNNGG 2 cut(s) 243, 543
BsaWI WCCGGW 2 cut(s) 94, 867
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse118I RCCGGY 1 cut(s) 867
Bse1I ACTGG 1 cut(s) 416
Bse21I CCTNAGG 1 cut(s) 521
Bse3DI GCAATG 3 cut(s) 379, 1224, 1248
BseDI CCNNGG 2 cut(s) 243, 543
BseGI GGATG 6 cut(s) 10, 52, 103, 539, 1134, 1210
BseMI GCAATG 3 cut(s) 379, 1224, 1248
BseMII CTCAG 2 cut(s) 606, 1119
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 2 cut(s) 972, 1376
BseXI GCAGC 1 cut(s) 84
BseYI CCCAGC 1 cut(s) 570
BsgI GTGCAG 2 cut(s) 383, 1294
BshFI GGCC 2 cut(s) 282, 569
BshTI ACCGGT 1 cut(s) 867
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 2 cut(s) 95, 868
BsmI GAATGC 2 cut(s) 156, 256
BsnI GGCC 2 cut(s) 282, 569
Bsp1286I GDGCHC 4 cut(s) 465, 894, 972, 1376
Bsp143I GATC 4 cut(s) 351, 382, 1018, 1330
BspANI GGCC 2 cut(s) 282, 569
BspCNI CTCAG 2 cut(s) 605, 1118
BspLI GGNNCC 3 cut(s) 851, 1137, 1293
BspPI GGATC 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 1067
BsrDI GCAATG 3 cut(s) 379, 1224, 1248
BsrFI RCCGGY 1 cut(s) 867
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 867
BssECI CCNNGG 2 cut(s) 243, 543
BssMI GATC 4 cut(s) 351, 382, 1018, 1330
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 404, 1323
Bst6I CTCTTC 1 cut(s) 1164
BstAFI CTTAAG 1 cut(s) 1067
BstBAI YACGTR 2 cut(s) 338, 348
BstDEI CTNAG 4 cut(s) 521, 592, 1105, 1183
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 6 cut(s) 10, 52, 103, 539, 1134, 1210
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 268, 372
BstKTI GATC 4 cut(s) 354, 385, 1021, 1333
BstMBI GATC 4 cut(s) 351, 382, 1018, 1330
BstMWI GCNNNNNNNGC 3 cut(s) 475, 525, 818
BstNSI RCATGY 1 cut(s) 860
BstSLI GKGCMC 2 cut(s) 972, 1376
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 4 cut(s) 351, 382, 1018, 1330
BstYI RGATCY 4 cut(s) 351, 382, 1018, 1330
Bsu36I CCTNAGG 1 cut(s) 521
BsuRI GGCC 2 cut(s) 282, 569
BtgI CCRYGG 1 cut(s) 543
BtsCI GGATG 6 cut(s) 10, 52, 103, 539, 1134, 1210
BtsI GCAGTG 2 cut(s) 1139, 1282
BtsIMutI CAGTG 2 cut(s) 1139, 1282
CfoI GCGC 2 cut(s) 268, 372
Cfr10I RCCGGY 1 cut(s) 867
Cfr13I GGNCC 3 cut(s) 281, 568, 850
Csp6I GTAC 3 cut(s) 23, 737, 1102
CspAI ACCGGT 1 cut(s) 867
CviAII CATG 3 cut(s) 857, 1149, 1214
CviQI GTAC 3 cut(s) 23, 737, 1102
DdeI CTNAG 4 cut(s) 521, 592, 1105, 1183
DpnI GATC 4 cut(s) 353, 384, 1020, 1332
DpnII GATC 4 cut(s) 351, 382, 1018, 1330
Eam1104I CTCTTC 1 cut(s) 1164
EarI CTCTTC 1 cut(s) 1164
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 894
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 850
Eco47III AGCGCT 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 939
Eco81I CCTNAGG 1 cut(s) 521
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 860, 1152, 1217
FatI CATG 3 cut(s) 856, 1148, 1213
FauNDI CATATG 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 6 cut(s) 17, 59, 110, 526, 1141, 1217
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 3 cut(s) 599, 782, 897
GlaI GCGC 2 cut(s) 267, 371
GluI GCNGC 1 cut(s) 73
GsaI CCCAGC 1 cut(s) 574
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 2 cut(s) 282, 569
HapII CCGG 2 cut(s) 95, 868
HhaI GCGC 2 cut(s) 268, 372
Hin1II CATG 3 cut(s) 860, 1152, 1217
Hin6I GCGC 2 cut(s) 266, 370
HinP1I GCGC 2 cut(s) 266, 370
HindIII AAGCTT 2 cut(s) 665, 878
HinfI GANTC 2 cut(s) 695, 750
HpaII CCGG 2 cut(s) 95, 868
HphI GGTGA 3 cut(s) 259, 785, 1270
Hpy166II GTNNAC 2 cut(s) 303, 678
Hpy188I TCNGA 9 cut(s) 556, 663, 718, 729, 825, 945, 958, 1108, 1348
Hpy188III TCNNGA 7 cut(s) 15, 148, 599, 844, 1156, 1166, 1249
Hpy8I GTNNAC 2 cut(s) 303, 678
HpyAV CCTTC 4 cut(s) 507, 683, 1216, 1300
HpyCH4III ACNGT 2 cut(s) 404, 1323
HpyCH4IV ACGT 4 cut(s) 337, 347, 443, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 475, 525, 818
HpyF3I CTNAG 4 cut(s) 521, 592, 1105, 1183
HpySE526I ACGT 4 cut(s) 337, 347, 443, 926
Hsp92II CATG 3 cut(s) 860, 1152, 1217
HspAI GCGC 2 cut(s) 266, 370
Kzo9I GATC 4 cut(s) 351, 382, 1018, 1330
LmnI GCTCC 4 cut(s) 468, 525, 664, 1135
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 3 cut(s) 130, 319, 1102
MaeI CTAG 3 cut(s) 599, 782, 897
MaeII ACGT 4 cut(s) 337, 347, 443, 926
MaeIII GTNAC 2 cut(s) 863, 1258
MalI GATC 4 cut(s) 353, 384, 1020, 1332
MboI GATC 4 cut(s) 351, 382, 1018, 1330
MboII GAAGA 4 cut(s) 266, 392, 1040, 1181
MfeI CAATTG 1 cut(s) 625
MflI RGATCY 4 cut(s) 351, 382, 1018, 1330
MhlI GDGCHC 4 cut(s) 465, 894, 972, 1376
MluCI AATT 8 cut(s) 88, 114, 625, 702, 835, 1054, 1187, 1267
MlyI GAGTC 1 cut(s) 744
MmeI TCCRAC 4 cut(s) 24, 155, 877, 1113
Mph1103I ATGCAT 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 609
MspCI CTTAAG 1 cut(s) 1067
MspI CCGG 2 cut(s) 95, 868
MunI CAATTG 1 cut(s) 625
Mva1269I GAATGC 2 cut(s) 156, 256
MwoI GCNNNNNNNGC 3 cut(s) 475, 525, 818
NdeI CATATG 1 cut(s) 182
NdeII GATC 4 cut(s) 351, 382, 1018, 1330
NlaIII CATG 3 cut(s) 860, 1152, 1217
NlaIV GGNNCC 3 cut(s) 851, 1137, 1293
NmeAIII GCCGAG 1 cut(s) 545
NmuCI GTSAC 1 cut(s) 1258
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 860
PciI ACATGT 1 cut(s) 856
PctI GAATGC 2 cut(s) 156, 256
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 1 cut(s) 695
PinAI ACCGGT 1 cut(s) 867
PkrI GCNGC 1 cut(s) 74
PleI GAGTC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 744
Ppu21I YACGTR 2 cut(s) 338, 348
PscI ACATGT 1 cut(s) 856
PshBI ATTAAT 1 cut(s) 1266
PsiI TTATAA 1 cut(s) 801
PspFI CCCAGC 1 cut(s) 570
PspN4I GGNNCC 3 cut(s) 851, 1137, 1293
PspPI GGNCC 3 cut(s) 281, 568, 850
PsuI RGATCY 4 cut(s) 351, 382, 1018, 1330
RsaI GTAC 3 cut(s) 24, 738, 1103
RsaNI GTAC 3 cut(s) 23, 737, 1102
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 4 cut(s) 351, 382, 1018, 1330
Sau96I GGNCC 3 cut(s) 281, 568, 850
SchI GAGTC 1 cut(s) 744
SduI GDGCHC 4 cut(s) 465, 894, 972, 1376
SfaNI GCATC 3 cut(s) 130, 319, 1102
SinI GGWCC 1 cut(s) 850
SmlI CTYRAG 3 cut(s) 203, 514, 1067
SmoI CTYRAG 3 cut(s) 203, 514, 1067
Sse9I AATT 8 cut(s) 88, 114, 625, 702, 835, 1054, 1187, 1267
SspI AATATT 1 cut(s) 609
SspMI CTAG 3 cut(s) 599, 782, 897
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 404, 1323
TaiI ACGT 4 cut(s) 340, 350, 446, 929
TaqI TCGA 1 cut(s) 16
TasI AATT 8 cut(s) 88, 114, 625, 702, 835, 1054, 1187, 1267
TatI WGTACW 1 cut(s) 1101
TfiI GAWTC 1 cut(s) 695
TscAI CASTG 2 cut(s) 1146, 1282
TseFI GTSAC 1 cut(s) 1258
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 1258
TspDTI ATGAA 7 cut(s) 300, 528, 702, 831, 1202, 1235, 1319
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 2 cut(s) 1146, 1282
Vha464I CTTAAG 1 cut(s) 1067
VpaK11BI GGWCC 1 cut(s) 850
VspI ATTAAT 1 cut(s) 1266
XapI RAATTY 3 cut(s) 114, 702, 1187
XbaI TCTAGA 1 cut(s) 598
XceI RCATGY 1 cut(s) 860
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 3 cut(s) 599, 782, 897
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.