AT3G54910

microtubule motor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Reverse (-)
20342753 .. 20345594
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54910.2

Sequence Viewer

Length: 1122 bp
ATGTGGTTGCCTAAACTTAAGTATGGTCATAGAGATTCTTCTGAATGCAAGAGGTTGGAGTGTTTTCTTGACAAAAATCTGCCATTACATAGAGCTCCGGTTATAGAAAGCTTCCGTCTTTACTTAATTGATTCAAAATGCACACCTGAGAATATCAAGATGTGGGTTGTTATAGCAGTTTCTCACTGCCTGCGTGAGCTGGAGGTTATTTATTCTTCATATCCGGAGAAGCCAAACATATTGCCGAGTAACTTGTATACCTGCAAATCGCTTGTGATCTTGGAACTCTGTGGCGAGATTCGCTTGGATGTTCCTCGAATGGCATTTCTTCCCTCTCTGAAAACTTTGCAACTTCACAGCGTGAGATACCTCAATGAAGACTCTCTTCATCGGCTTCTATCTAACTGCCCTGTTCTTGAAGATCTATTGGTGGATTTACTTTTGTCAGACAGCATGGAAAAGCTAACTGTTGTTGTCCCATCTTTGCAGATTTTATCACTCTTTATACCTCATTCTTATGAGATCGATGGGATTGTGATAGAAACTCCTTCTTTAAAGTATTTTAAACTTATAGACCATAACAGTAAGAGTCACTACTGTTTGGTTAAGAATATGCCTAACCTGATAGAGGCAGATATAGATGTTGAATTACATAGCATCAAGAGTCTTATTGGATCAATCACATCTGTCAAGCGTCTTTCAATATGTTCACAGGCTATGTATGATGGAGGTTTTGTCTTCAACCAGCTTAAACATCTGAAGCTATGTAGATGCAAAGGGCATTCGTCGGATTTACTTGTCCGACTGCTCAAAGATTCTTCTAACTTACAAGCACTAGACCTTTCCGAAATGGATTATCATGAGAATCATGATATCCTTTACTGGCATCAACCAAGTACTGTCCCTGAATGTATGTTGTTGAGTCTCCAAACTCTCAACTTGTCGGCATATAGAGGAACACCAGAAGAGAGAGATCTTGCAGTGTATTTCTTGAAGAACGCTGTTCACTTGAAGACCACAACAATCAAGTCATGTGTTTTTGATGATGAAAGATTTGACATGTTAAAGGAGTTGGCACTTTCTTCTAGAGCTTCAACAACATGCCAACTCGTGTTTGATTGA

Protein Analysis

373

Amino Acids

42.79

Weight (kDa)

6.21

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 54 - 193 3.3e-15 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 112 - 137 2.7e-10 Leucine Rich Repeat
FBD PF08387 297 - 342 4.3e-17 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 223
AclWI GGATC 1 cut(s) 682
AcuI CTGAAG 1 cut(s) 779
AdeI CACNNNGTG 1 cut(s) 361
AfaI GTAC 1 cut(s) 898
AfiI CCNNNNNNNGG 1 cut(s) 628
AflII CTTAAG 1 cut(s) 17
AflIII ACRYGT 1 cut(s) 1059
AgsI TTSAA 8 cut(s) 135, 419, 647, 702, 742, 994, 1012, 1095
AluBI AGCT 7 cut(s) 95, 111, 199, 463, 748, 763, 1091
AluI AGCT 7 cut(s) 95, 111, 199, 463, 748, 763, 1091
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 929
AlwI GGATC 1 cut(s) 682
Aor13HI TCCGGA 1 cut(s) 223
BanII GRGCYC 1 cut(s) 97
BauI CACGAG 1 cut(s) 1109
BbsI GAAGAC 3 cut(s) 384, 730, 1019
Bbv12I GWGCWC 1 cut(s) 97
BccI CCATC 3 cut(s) 487, 521, 719
BcoDI GTCTC 1 cut(s) 929
BfaI CTAG 2 cut(s) 836, 1086
BfrI CTTAAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 269
BglII AGATCT 2 cut(s) 421, 973
BmcAI AGTACT 1 cut(s) 898
BmsI GCATC 3 cut(s) 666, 761, 895
BpiI GAAGAC 3 cut(s) 384, 730, 1019
BpmI CTGGAG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 525
BsaWI WCCGGW 2 cut(s) 97, 223
BsaXI ACNNNNNCTCC 2 cut(s) 720, 750
Bsc4I CCNNNNNNNGG 1 cut(s) 628
Bse1I ACTGG 1 cut(s) 887
BseAI TCCGGA 1 cut(s) 223
BseCI ATCGAT 1 cut(s) 525
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 628
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 887
BshVI ATCGAT 1 cut(s) 525
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 2 cut(s) 98, 224
BslFI GGGAC 2 cut(s) 461, 887
BslI CCNNNNNNNGG 1 cut(s) 628
BsmAI GTCTC 1 cut(s) 929
BsmFI GGGAC 2 cut(s) 461, 887
BsmI GAATGC 2 cut(s) 50, 781
Bsp1286I GDGCHC 1 cut(s) 97
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 5 cut(s) 276, 421, 522, 674, 973
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 525
BspEI TCCGGA 1 cut(s) 223
BspHI TCATGA 2 cut(s) 859, 868
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 1 cut(s) 682
BspTI CTTAAG 1 cut(s) 17
BsrI ACTGG 1 cut(s) 887
BssMI GATC 5 cut(s) 276, 421, 522, 674, 973
BssNAI GTATAC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 1109
Bst1107I GTATAC 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 1109
Bst4CI ACNGT 4 cut(s) 469, 584, 599, 901
Bst6I CTCTTC 2 cut(s) 390, 960
BstAFI CTTAAG 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 147
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 5 cut(s) 279, 424, 525, 677, 976
BstMAI GTCTC 1 cut(s) 929
BstMBI GATC 5 cut(s) 276, 421, 522, 674, 973
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNSI RCATGY 2 cut(s) 1063, 1104
BstV2I GAAGAC 3 cut(s) 384, 730, 1019
BstX2I RGATCY 2 cut(s) 421, 973
BstYI RGATCY 2 cut(s) 421, 973
BstZ17I GTATAC 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 525
BsuTUI ATCGAT 1 cut(s) 525
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 2 cut(s) 184, 987
BtsIMutI CAGTG 2 cut(s) 184, 987
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 191
CciI TCATGA 2 cut(s) 859, 868
ClaI ATCGAT 1 cut(s) 525
CseI GACGC 1 cut(s) 683
Csp6I GTAC 1 cut(s) 897
CviAII CATG 6 cut(s) 454, 860, 869, 1032, 1060, 1101
CviQI GTAC 1 cut(s) 897
DdeI CTNAG 1 cut(s) 147
DpnI GATC 5 cut(s) 278, 423, 524, 676, 975
DpnII GATC 5 cut(s) 276, 421, 522, 674, 973
DraI TTTAAA 2 cut(s) 555, 565
DraIII CACNNNGTG 1 cut(s) 361
Eam1104I CTCTTC 2 cut(s) 390, 960
EarI CTCTTC 2 cut(s) 390, 960
Ecl136II GAGCTC 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 779
EcoICRI GAGCTC 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoRV GATATC 1 cut(s) 874
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 6 cut(s) 457, 863, 872, 1035, 1063, 1104
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 2 cut(s) 461, 887
FatI CATG 6 cut(s) 453, 859, 868, 1031, 1059, 1100
FblI GTMKAC 1 cut(s) 257
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 97
FspBI CTAG 2 cut(s) 836, 1086
GsuI CTGGAG 1 cut(s) 221
HapII CCGG 2 cut(s) 98, 224
HgaI GACGC 1 cut(s) 683
Hin1II CATG 6 cut(s) 457, 863, 872, 1035, 1063, 1104
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 9 cut(s) 35, 131, 298, 380, 589, 664, 815, 865, 922
HpaII CCGG 2 cut(s) 98, 224
Hpy166II GTNNAC 3 cut(s) 258, 710, 1006
Hpy188I TCNGA 7 cut(s) 43, 339, 448, 759, 790, 803, 847
Hpy188III TCNNGA 9 cut(s) 68, 157, 224, 416, 661, 860, 869, 991, 1086
Hpy8I GTNNAC 3 cut(s) 258, 710, 1006
Hpy99I CGWCG 1 cut(s) 790
HpyAV CCTTC 1 cut(s) 558
HpyCH4III ACNGT 4 cut(s) 469, 584, 599, 901
HpyCH4V TGCA 7 cut(s) 48, 141, 264, 349, 487, 774, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 6 cut(s) 457, 863, 872, 1035, 1063, 1104
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 5 cut(s) 276, 421, 522, 674, 973
LmnI GCTCC 1 cut(s) 100
LweI GCATC 3 cut(s) 666, 761, 895
MaeI CTAG 2 cut(s) 836, 1086
MaeIII GTNAC 2 cut(s) 248, 590
MalI GATC 5 cut(s) 278, 423, 524, 676, 975
MboI GATC 5 cut(s) 276, 421, 522, 674, 973
MflI RGATCY 2 cut(s) 421, 973
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 126, 647
MlyI GAGTC 4 cut(s) 374, 598, 673, 931
MmeI TCCRAC 3 cut(s) 36, 768, 826
MnlI CCTC 9 cut(s) 45, 196, 324, 343, 380, 519, 622, 722, 947
MroI TCCGGA 1 cut(s) 223
MseI TTAA 7 cut(s) 18, 125, 554, 564, 606, 750, 1064
MslI CAYNNNNRTG 1 cut(s) 516
MspCI CTTAAG 1 cut(s) 17
MspI CCGG 2 cut(s) 98, 224
Mva1269I GAATGC 2 cut(s) 50, 781
MwoI GCNNNNNNNGC 1 cut(s) 300
NdeII GATC 5 cut(s) 276, 421, 522, 674, 973
NlaIII CATG 6 cut(s) 457, 863, 872, 1035, 1063, 1104
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 2 cut(s) 1063, 1104
PagI TCATGA 2 cut(s) 859, 868
PciI ACATGT 1 cut(s) 1059
PctI GAATGC 2 cut(s) 50, 781
PfeI GAWTC 5 cut(s) 35, 131, 298, 815, 865
PleI GAGTC 4 cut(s) 374, 597, 672, 930
PpsI GAGTC 4 cut(s) 374, 597, 672, 930
PscI ACATGT 1 cut(s) 1059
Psp124BI GAGCTC 1 cut(s) 97
PsuI RGATCY 2 cut(s) 421, 973
RsaI GTAC 1 cut(s) 898
RsaNI GTAC 1 cut(s) 897
RseI CAYNNNNRTG 1 cut(s) 516
SacI GAGCTC 1 cut(s) 97
SaqAI TTAA 7 cut(s) 18, 125, 554, 564, 606, 750, 1064
Sau3AI GATC 5 cut(s) 276, 421, 522, 674, 973
ScaI AGTACT 1 cut(s) 898
SchI GAGTC 4 cut(s) 374, 598, 673, 931
SduI GDGCHC 1 cut(s) 97
SfaNI GCATC 3 cut(s) 666, 761, 895
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 2 cut(s) 126, 647
SspMI CTAG 2 cut(s) 836, 1086
SstI GAGCTC 1 cut(s) 97
TaaI ACNGT 4 cut(s) 469, 584, 599, 901
TaqI TCGA 2 cut(s) 316, 525
TasI AATT 2 cut(s) 126, 647
TatI WGTACW 1 cut(s) 896
TfiI GAWTC 5 cut(s) 35, 131, 298, 815, 865
Tru1I TTAA 7 cut(s) 18, 125, 554, 564, 606, 750, 1064
Tru9I TTAA 7 cut(s) 18, 125, 554, 564, 606, 750, 1064
TscAI CASTG 2 cut(s) 191, 987
TseFI GTSAC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 4 cut(s) 207, 377, 390, 1062
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 2 cut(s) 191, 987
Vha464I CTTAAG 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 626
XbaI TCTAGA 1 cut(s) 1085
XceI RCATGY 2 cut(s) 1063, 1104
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 836, 1086
ZrmI AGTACT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.