AT5G56810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Forward (+)
22974363 .. 22976112
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56810.1

Sequence Viewer

Length: 1308 bp
ATGGAAGCTGCAAGATCTGGAATCGAAGATGTTACATCTCCTGATAGGATCAGCCAGTTACCTAACGATTTACTTTTTCGAATACTCTCATTAATCCCGGTAAGCGATGCAATGTCCACAAGTTTATTGTCTAAACGTTGGAAATCTGTGTGGAAGATGTTGCCAACGCTTGTATACAATGAAAACTCTTGTTCCAATATTGGTTCTCTTGGATTTGACCAATTTTGTGGTAGGTCCTTGCAATTACATGAAGCTCCACTTCTCAAAACCCTAACCCTAGAACTTAGGAAGCAAACTGATTCCTTAGATTCTTCCATATTTCCAAACATTCATTCTACTCTCCTTGAATTCTCAATCAAATCTACTGGTTATCCTGTTTATTACAGTACTATCAGTTTCCCAAACAACCTTGATGTCTTCCAAACACTAGTTGTCTTGAAACTCCAAGGCAATATTTGTCTTGATGTTGTTGATTCTCCGGTTTGTTTCCAGTCCTTGAAGAGTTTGTACCTCACATGTGTGAATTTCGAGAATGAAGAATCTTTTTCCAAACTTTTATCTGCTTGTCCTGTTCTTGAAGACCTCTTCCTCCAAAGACTTTGTAGTGTGGGGCGTTTTTTGTTTTCCATATCAGTCCCTTCTCTACAGAGATTAACCTACACTAAAGAACAAGCCTATTATTCTAACGATGAAGCAATACTCGAGATTACCGCTCCTTCTTTGAAGCACTTAAACATCTTCGATCGCGTAGGTGTTTTCAGTTTTATTGAGGATATGCCTAAATTGGTGGAAGCAAGTGTTAGAGTTAAACTGTCAAAGAATGAGAAGCTTCCGAAAGTTCTTACTTCAGTTGAGCATCTTTCGCTAGATCTATATCCTTCAATGGTTTTTCACCTTGATGATAGATTCATCTCCAAGCAGCTTCTTCATCTGAAATTAGACATTTACGACAACTTTCAGTCGAATCTTCTTCTGAGTTTGTTGAAAGATTTACCTAATCTACAATCTCTCAAGCTCAACCATTCACATCCCAGCTATAATGTCGAAGATCAACCGTGTTCAGTCTCTGAACCAAGCTCTGTTCCTGAATGCTTGAGCTTCCATCTCGAGACTTTTCAATGGATAGGCTACGCAGGAACATTTGAAGAGATAGCAGCTGCGGTTTACGTTCTGAAAAACGCTCGTTGTTTAAAGAATGCTACAATCTCTCTGTATTCAAGGGGCACAGAGAATGGTTTGATGATGATTAAGGAGTTGGAATCTATGTCTAAAGGTTCAATCATGTGTCAGCTTTTAGTTAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

435

Amino Acids

49.15

Weight (kDa)

5.67

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 55 5.4e-09 F-box domain
LRR_At5g56370 PF24758 132 - 337 2.5e-08 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 165 - 190 9.2e-08 Leucine Rich Repeat
FBD PF08387 357 - 402 2.1e-20 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 713
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 747
AciI CCGC 2 cut(s) 711, 1160
AclI AACGTT 1 cut(s) 136
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 3 cut(s) 347, 523, 1301
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 2 cut(s) 388, 509
AflIII ACRYGT 1 cut(s) 515
AhlI ACTAGT 1 cut(s) 427
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AleI CACNNNNGTG 1 cut(s) 518
Alw26I GTCTC 2 cut(s) 1069, 1103
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 2 cut(s) 701, 1106
ApeKI GCWGC 4 cut(s) 8, 919, 1154, 1157
ApoI RAATTY 3 cut(s) 347, 523, 1301
AseI ATTAAT 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 884
AsuII TTCGAA 1 cut(s) 79
AvaI CYCGRG 2 cut(s) 701, 1106
AvaII GGWCC 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 1226
BarI GAAGNNNNNNTAC 2 cut(s) 491, 523
BbsI GAAGAC 2 cut(s) 409, 585
BbvI GCAGC 3 cut(s) 931, 1144, 1166
BccI CCATC 1 cut(s) 1110
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 1069, 1103
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 3 cut(s) 278, 428, 866
BfmI CTRYAG 1 cut(s) 644
BglII AGATCT 2 cut(s) 14, 868
BisI GCNGC 4 cut(s) 9, 920, 1155, 1158
BlsI GCNGC 4 cut(s) 10, 921, 1156, 1159
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 2 cut(s) 701, 1106
BmgT120I GGNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 97, 865
BpiI GAAGAC 2 cut(s) 409, 585
Bpu14I TTCGAA 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 995, 1114
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 873
BsaJI CCNNGG 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 478
Bse1I ACTGG 3 cut(s) 55, 370, 490
Bse3DI GCAATG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 873
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 1 cut(s) 1027
BseJI GATNNNNATC 1 cut(s) 873
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 965
BseNI ACTGG 3 cut(s) 55, 370, 490
BseSI GKGCMC 1 cut(s) 1226
BseXI GCAGC 3 cut(s) 931, 1144, 1166
BseYI CCCAGC 1 cut(s) 1031
Bsh1236I CGCG 1 cut(s) 747
Bsh1285I CGRYCG 1 cut(s) 745
BsiEI CGRYCG 1 cut(s) 745
BsiHKCI CYCGRG 2 cut(s) 701, 1106
BsiSI CCGG 2 cut(s) 98, 479
BslFI GGGAC 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 1069, 1103
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 2 cut(s) 1094, 1201
BsoBI CYCGRG 2 cut(s) 701, 1106
Bsp119I TTCGAA 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 1226
Bsp143I GATC 5 cut(s) 14, 48, 742, 868, 1048
BspACI CCGC 2 cut(s) 711, 1160
BspCNI CTCAG 1 cut(s) 966
BspFNI CGCG 1 cut(s) 747
BspPI GGATC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 3 cut(s) 55, 370, 490
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 5 cut(s) 14, 48, 742, 868, 1048
BssNAI GTATAC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 445
Bst1107I GTATAC 1 cut(s) 175
Bst4CI ACNGT 3 cut(s) 386, 813, 1056
Bst6I CTCTTC 3 cut(s) 494, 590, 1140
BstBI TTCGAA 1 cut(s) 79
BstDEI CTNAG 3 cut(s) 284, 304, 974
BstF5I GGATG 1 cut(s) 1027
BstFNI CGCG 1 cut(s) 747
BstKTI GATC 5 cut(s) 17, 51, 745, 871, 1051
BstMAI GTCTC 2 cut(s) 1069, 1103
BstMBI GATC 5 cut(s) 14, 48, 742, 868, 1048
BstMCI CGRYCG 1 cut(s) 745
BstMWI GCNNNNNNNGC 1 cut(s) 862
BstNSI RCATGY 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 644
BstSLI GKGCMC 1 cut(s) 1226
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 3 cut(s) 931, 1144, 1166
BstV2I GAAGAC 2 cut(s) 409, 585
BstX2I RGATCY 2 cut(s) 14, 868
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 2 cut(s) 14, 868
BstZ17I GTATAC 1 cut(s) 175
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 1027
CaiI CAGNNNCTG 1 cut(s) 1067
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 387, 508
CviAII CATG 3 cut(s) 248, 516, 1282
CviQI GTAC 2 cut(s) 387, 508
DdeI CTNAG 3 cut(s) 284, 304, 974
DpnI GATC 5 cut(s) 16, 50, 744, 870, 1050
DpnII GATC 5 cut(s) 14, 48, 742, 868, 1048
DraI TTTAAA 1 cut(s) 1191
Eam1104I CTCTTC 3 cut(s) 494, 590, 1140
EarI CTCTTC 3 cut(s) 494, 590, 1140
Eco130I CCWWGG 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 831
Eco88I CYCGRG 2 cut(s) 701, 1106
EcoO109I RGGNCCY 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 3 cut(s) 251, 519, 1285
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 1 cut(s) 620
FatI CATG 3 cut(s) 247, 515, 1281
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 9, 920, 1155, 1158
FokI GGATG 1 cut(s) 1014
Fsp4HI GCNGC 4 cut(s) 9, 920, 1155, 1158
FspBI CTAG 3 cut(s) 278, 428, 866
GluI GCNGC 4 cut(s) 9, 920, 1155, 1158
GsaI CCCAGC 1 cut(s) 1035
HapII CCGG 2 cut(s) 98, 479
Hin1II CATG 3 cut(s) 251, 519, 1285
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 8 cut(s) 21, 299, 308, 473, 539, 906, 964, 1259
HpaII CCGG 2 cut(s) 98, 479
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 3 cut(s) 117, 175, 1165
Hpy188I TCNGA 5 cut(s) 834, 933, 975, 1069, 1173
Hpy8I GTNNAC 3 cut(s) 117, 175, 1165
HpyAV CCTTC 3 cut(s) 648, 726, 888
HpyCH4III ACNGT 3 cut(s) 386, 813, 1056
HpyCH4IV ACGT 2 cut(s) 136, 1167
HpyCH4V TGCA 3 cut(s) 11, 110, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 862
HpyF3I CTNAG 3 cut(s) 284, 304, 974
HpySE526I ACGT 2 cut(s) 136, 1167
Hsp92II CATG 3 cut(s) 251, 519, 1285
Kzo9I GATC 5 cut(s) 14, 48, 742, 868, 1048
LmnI GCTCC 2 cut(s) 259, 718
Lsp1109I GCAGC 3 cut(s) 931, 1144, 1166
LweI GCATC 2 cut(s) 97, 865
MaeI CTAG 3 cut(s) 278, 428, 866
MaeII ACGT 2 cut(s) 136, 1167
MaeIII GTNAC 2 cut(s) 31, 57
MalI GATC 5 cut(s) 16, 50, 744, 870, 1050
MbiI CCGCTC 1 cut(s) 713
MboI GATC 5 cut(s) 14, 48, 742, 868, 1048
MflI RGATCY 2 cut(s) 14, 868
MhlI GDGCHC 1 cut(s) 1226
MluCI AATT 7 cut(s) 221, 242, 347, 523, 782, 935, 1301
MmeI TCCRAC 2 cut(s) 119, 1236
MnlI CCTC 4 cut(s) 521, 593, 599, 763
MseI TTAA 8 cut(s) 92, 653, 731, 807, 1190, 1248, 1299, 1306
MslI CAYNNNNRTG 2 cut(s) 518, 897
MspA1I CMGCKG 1 cut(s) 1157
MspI CCGG 2 cut(s) 98, 479
MspR9I CCNGG 1 cut(s) 98
Mva1269I GAATGC 2 cut(s) 1094, 1201
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 1 cut(s) 862
NciI CCSGG 1 cut(s) 98
NdeII GATC 5 cut(s) 14, 48, 742, 868, 1048
NlaIII CATG 3 cut(s) 251, 519, 1285
NspI RCATGY 1 cut(s) 519
NspV TTCGAA 1 cut(s) 79
OliI CACNNNNGTG 1 cut(s) 518
PaeR7I CTCGAG 2 cut(s) 701, 1106
PciI ACATGT 1 cut(s) 515
PctI GAATGC 2 cut(s) 1094, 1201
PfeI GAWTC 8 cut(s) 21, 299, 308, 473, 539, 906, 964, 1259
PkrI GCNGC 4 cut(s) 10, 921, 1156, 1159
Ple19I CGATCG 1 cut(s) 745
PpuMI RGGWCCY 1 cut(s) 234
PscI ACATGT 1 cut(s) 515
PshBI ATTAAT 1 cut(s) 92
Psp1406I AACGTT 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 1031
PspPI GGNCC 1 cut(s) 234
PspPPI RGGWCCY 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 2 cut(s) 14, 868
PvuI CGATCG 1 cut(s) 745
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 2 cut(s) 388, 509
RsaNI GTAC 2 cut(s) 387, 508
RseI CAYNNNNRTG 2 cut(s) 518, 897
SaqAI TTAA 8 cut(s) 92, 653, 731, 807, 1190, 1248, 1299, 1306
SatI GCNGC 4 cut(s) 9, 920, 1155, 1158
Sau3AI GATC 5 cut(s) 14, 48, 742, 868, 1048
Sau96I GGNCC 1 cut(s) 234
ScaI AGTACT 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 1226
SfaNI GCATC 2 cut(s) 97, 865
SfcI CTRYAG 1 cut(s) 644
Sfr274I CTCGAG 2 cut(s) 701, 1106
SfuI TTCGAA 1 cut(s) 79
SinI GGWCC 1 cut(s) 234
SlaI CTCGAG 2 cut(s) 701, 1106
SmiMI CAYNNNNRTG 2 cut(s) 518, 897
SmlI CTYRAG 4 cut(s) 701, 1010, 1093, 1106
SmoI CTYRAG 4 cut(s) 701, 1010, 1093, 1106
SpeI ACTAGT 1 cut(s) 427
Sse9I AATT 7 cut(s) 221, 242, 347, 523, 782, 935, 1301
SsiI CCGC 2 cut(s) 711, 1160
SspI AATATT 2 cut(s) 199, 454
SspMI CTAG 3 cut(s) 278, 428, 866
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 3 cut(s) 386, 813, 1056
TaiI ACGT 2 cut(s) 139, 1170
TaqI TCGA 8 cut(s) 24, 79, 528, 702, 741, 962, 1044, 1107
TasI AATT 7 cut(s) 221, 242, 347, 523, 782, 935, 1301
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 8 cut(s) 21, 299, 308, 473, 539, 906, 964, 1259
Tru1I TTAA 8 cut(s) 92, 653, 731, 807, 1190, 1248, 1299, 1306
Tru9I TTAA 8 cut(s) 92, 653, 731, 807, 1190, 1248, 1299, 1306
TseI GCWGC 4 cut(s) 8, 919, 1154, 1157
TspDTI ATGAA 7 cut(s) 195, 264, 320, 549, 705, 898, 917
VpaK11BI GGWCC 1 cut(s) 234
VspI ATTAAT 1 cut(s) 92
XapI RAATTY 3 cut(s) 347, 523, 1301
XceI RCATGY 1 cut(s) 519
XhoI CTCGAG 2 cut(s) 701, 1106
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 3 cut(s) 278, 428, 866
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.