LRR-repeat protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TDBD | PF16135 | 438 - 493 | 5e-11 | Tify domain binding domain |
| TDBD | PF16135 | 674 - 719 | 7.8e-16 | Tify domain binding domain |
| PHD-1st_NSD | PF23011 | 735 - 778 | 5.2e-06 | Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 |
| PHD | PF00628 | 738 - 777 | 1e-06 | PHD-finger |
| IDM1_C | PF23209 | 953 - 1091 | 4.4e-51 | Increased DNA methylation 1, C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1817 |
| AccB1I | GGYRCC | 2 cut(s) | 1817, 2280 |
| AccI | GTMKAC | 1 cut(s) | 2189 |
| AccII | CGCG | 1 cut(s) | 66 |
| AclI | AACGTT | 2 cut(s) | 408, 3226 |
| AclWI | GGATC | 4 cut(s) | 306, 1282, 1579, 2402 |
| AcoI | YGGCCR | 1 cut(s) | 50 |
| AcsI | RAATTY | 3 cut(s) | 2558, 3126, 3176 |
| AcuI | CTGAAG | 5 cut(s) | 80, 987, 1695, 1889, 1992 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 121, 126, 221, 334, 941, 1785, 2753, 3064 |
| AflIII | ACRYGT | 1 cut(s) | 1544 |
| AgeI | ACCGGT | 1 cut(s) | 941 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2006 |
| AjiI | CACGTC | 2 cut(s) | 1545, 2102 |
| AjnI | CCWGG | 3 cut(s) | 125, 2521, 3292 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1696, 1728 |
| Alw21I | GWGCWC | 1 cut(s) | 2482 |
| Alw26I | GTCTC | 8 cut(s) | 45, 103, 642, 1175, 1631, 1817, 1993, 2648 |
| Alw44I | GTGCAC | 1 cut(s) | 2478 |
| AlwI | GGATC | 4 cut(s) | 306, 1282, 1579, 2402 |
| Ama87I | CYCGRG | 3 cut(s) | 42, 120, 1244 |
| AoxI | GGCC | 6 cut(s) | 50, 112, 123, 2491, 2884, 2919 |
| ApaLI | GTGCAC | 1 cut(s) | 2478 |
| ApoI | RAATTY | 3 cut(s) | 2558, 3126, 3176 |
| AsiGI | ACCGGT | 1 cut(s) | 941 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 16, 2624 |
| Asp718I | GGTACC | 1 cut(s) | 1817 |
| AspA2I | CCTAGG | 1 cut(s) | 977 |
| AspLEI | GCGC | 3 cut(s) | 66, 1166, 3285 |
| AspS9I | GGNCC | 7 cut(s) | 46, 112, 117, 123, 2519, 2744, 2919 |
| AsuC2I | CCSGG | 4 cut(s) | 54, 121, 122, 1924 |
| AvaI | CYCGRG | 3 cut(s) | 42, 120, 1244 |
| AvaII | GGWCC | 4 cut(s) | 46, 117, 2519, 2744 |
| AvrII | CCTAGG | 1 cut(s) | 977 |
| BaeGI | GKGCMC | 2 cut(s) | 1772, 2482 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3200, 3233 |
| BanI | GGYRCC | 2 cut(s) | 1817, 2280 |
| BanII | GRGCYC | 1 cut(s) | 468 |
| BauI | CACGAG | 2 cut(s) | 2150, 3212 |
| BbsI | GAAGAC | 3 cut(s) | 363, 1202, 1457 |
| Bbv12I | GWGCWC | 1 cut(s) | 2482 |
| BbvCI | CCTCAGC | 2 cut(s) | 572, 1173 |
| BccI | CCATC | 4 cut(s) | 379, 1361, 1559, 1958 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciT130I | CCWGG | 3 cut(s) | 127, 2523, 3294 |
| BciVI | GTATCC | 1 cut(s) | 1912 |
| BclI | TGATCA | 1 cut(s) | 2851 |
| BcnI | CCSGG | 4 cut(s) | 54, 121, 122, 1924 |
| BcoDI | GTCTC | 8 cut(s) | 45, 103, 642, 1175, 1631, 1817, 1993, 2648 |
| BfaI | CTAG | 8 cut(s) | 321, 755, 978, 1028, 1136, 1593, 1763, 3035 |
| BfmI | CTRYAG | 4 cut(s) | 1293, 1656, 2221, 3263 |
| BfuI | GTATCC | 1 cut(s) | 1912 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 820 |
| BlnI | CCTAGG | 1 cut(s) | 977 |
| BlpI | GCTNAGC | 1 cut(s) | 438 |
| Bme1390I | CCNGG | 7 cut(s) | 54, 121, 122, 127, 1924, 2523, 3294 |
| Bme18I | GGWCC | 4 cut(s) | 46, 117, 2519, 2744 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2006 |
| BmeT110I | CYCGRG | 3 cut(s) | 42, 120, 1244 |
| BmgBI | CACGTC | 2 cut(s) | 1545, 2102 |
| BmgT120I | GGNCC | 7 cut(s) | 46, 112, 117, 123, 2519, 2744, 2919 |
| BmiI | GGNNCC | 8 cut(s) | 19, 47, 119, 465, 507, 1819, 2282, 2920 |
| BmrFI | CCNGG | 7 cut(s) | 54, 121, 122, 127, 1924, 2523, 3294 |
| BmsI | GCATC | 8 cut(s) | 268, 602, 1343, 1917, 2040, 2347, 2423, 3167 |
| BpiI | GAAGAC | 3 cut(s) | 363, 1202, 1457 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 568, 600, 1087, 1119 |
| Bpu10I | CCTNAGC | 4 cut(s) | 87, 572, 726, 1173 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 438 |
| BpuEI | CTTGAG | 2 cut(s) | 1460, 2916 |
| BpuMI | CCSGG | 4 cut(s) | 54, 121, 122, 1924 |
| BsaI | GGTCTC | 3 cut(s) | 45, 103, 1631 |
| BsaWI | WCCGGW | 3 cut(s) | 508, 941, 1960 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2223, 2253 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 121, 126, 221, 334, 941, 1785, 2753, 3064 |
| Bse118I | RCCGGY | 4 cut(s) | 214, 689, 941, 1708 |
| Bse1I | ACTGG | 2 cut(s) | 1240, 1327 |
| Bse3DI | GCAATG | 2 cut(s) | 1608, 2326 |
| BseBI | CCWGG | 3 cut(s) | 127, 2523, 3294 |
| BseGI | GGATG | 7 cut(s) | 1468, 1932, 1969, 2480, 2632, 2952, 3158 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 121, 126, 221, 334, 941, 1785, 2753, 3064 |
| BseMI | GCAATG | 2 cut(s) | 1608, 2326 |
| BseMII | CTCAG | 7 cut(s) | 101, 563, 609, 855, 1164, 1416, 2659 |
| BseNI | ACTGG | 2 cut(s) | 1240, 1327 |
| BseRI | GAGGAG | 5 cut(s) | 218, 221, 476, 589, 1108 |
| BseSI | GKGCMC | 2 cut(s) | 1772, 2482 |
| BseX3I | CGGCCG | 1 cut(s) | 50 |
| BseYI | CCCAGC | 1 cut(s) | 2942 |
| BsgI | GTGCAG | 2 cut(s) | 687, 2506 |
| Bsh1236I | CGCG | 1 cut(s) | 66 |
| Bsh1285I | CGRYCG | 2 cut(s) | 53, 590 |
| BshFI | GGCC | 6 cut(s) | 52, 114, 125, 2493, 2886, 2921 |
| BshNI | GGYRCC | 2 cut(s) | 1817, 2280 |
| BshTI | ACCGGT | 1 cut(s) | 941 |
| BsiEI | CGRYCG | 2 cut(s) | 53, 590 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2482 |
| BsiHKCI | CYCGRG | 3 cut(s) | 42, 120, 1244 |
| BslFI | GGGAC | 7 cut(s) | 2049, 2285, 2539, 2689, 3025, 3260, 3265 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 121, 126, 221, 334, 941, 1785, 2753, 3064 |
| BsmAI | GTCTC | 8 cut(s) | 45, 103, 642, 1175, 1631, 1817, 1993, 2648 |
| BsmBI | CGTCTC | 3 cut(s) | 642, 1175, 1993 |
| BsmFI | GGGAC | 7 cut(s) | 2049, 2285, 2539, 2689, 3025, 3260, 3265 |
| BsmI | GAATGC | 1 cut(s) | 2436 |
| BsnI | GGCC | 6 cut(s) | 52, 114, 125, 2493, 2886, 2921 |
| Bso31I | GGTCTC | 3 cut(s) | 45, 103, 1631 |
| BsoBI | CYCGRG | 3 cut(s) | 42, 120, 1244 |
| Bsp1286I | GDGCHC | 3 cut(s) | 468, 1772, 2482 |
| Bsp143I | GATC | 7 cut(s) | 298, 1274, 1571, 1595, 2407, 2542, 2851 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 438 |
| Bsp19I | CCATGG | 1 cut(s) | 3247 |
| BspANI | GGCC | 6 cut(s) | 52, 114, 125, 2493, 2886, 2921 |
| BspCNI | CTCAG | 7 cut(s) | 100, 564, 610, 856, 1165, 1417, 2658 |
| BspFNI | CGCG | 1 cut(s) | 66 |
| BspHI | TCATGA | 2 cut(s) | 1792, 2848 |
| BspLI | GGNNCC | 8 cut(s) | 19, 47, 119, 465, 507, 1819, 2282, 2920 |
| BspMAI | CTGCAG | 3 cut(s) | 1297, 2225, 3267 |
| BspPI | GGATC | 4 cut(s) | 306, 1282, 1579, 2402 |
| BspQI | GCTCTTC | 2 cut(s) | 278, 599 |
| BspT107I | GGYRCC | 2 cut(s) | 1817, 2280 |
| BspTNI | GGTCTC | 3 cut(s) | 45, 103, 1631 |
| BsrDI | GCAATG | 2 cut(s) | 1608, 2326 |
| BsrFI | RCCGGY | 4 cut(s) | 214, 689, 941, 1708 |
| BsrI | ACTGG | 2 cut(s) | 1240, 1327 |
| BssAI | RCCGGY | 4 cut(s) | 214, 689, 941, 1708 |
| BssMI | GATC | 7 cut(s) | 298, 1274, 1571, 1595, 2407, 2542, 2851 |
| BssSI | CACGAG | 2 cut(s) | 2150, 3212 |
| BssT1I | CCWWGG | 7 cut(s) | 342, 977, 1497, 2261, 2829, 3058, 3247 |
| Bst2BI | CACGAG | 2 cut(s) | 2150, 3212 |
| Bst2UI | CCWGG | 3 cut(s) | 127, 2523, 3294 |
| Bst6I | CTCTTC | 6 cut(s) | 278, 599, 992, 1865, 1897, 2151 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3047 |
| BstC8I | GCNNGC | 7 cut(s) | 185, 1398, 1477, 1518, 2089, 2455, 3141 |
| BstDSI | CCRYGG | 1 cut(s) | 3247 |
| BstF5I | GGATG | 7 cut(s) | 1468, 1932, 1969, 2480, 2632, 2952, 3158 |
| BstFNI | CGCG | 1 cut(s) | 66 |
| BstHHI | GCGC | 3 cut(s) | 66, 1166, 3285 |
| BstKTI | GATC | 7 cut(s) | 301, 1277, 1574, 1598, 2410, 2545, 2854 |
| BstMAI | GTCTC | 8 cut(s) | 45, 103, 642, 1175, 1631, 1817, 1993, 2648 |
| BstMBI | GATC | 7 cut(s) | 298, 1274, 1571, 1595, 2407, 2542, 2851 |
| BstMCI | CGRYCG | 2 cut(s) | 53, 590 |
| BstNI | CCWGG | 3 cut(s) | 127, 2523, 3294 |
| BstNSI | RCATGY | 2 cut(s) | 1400, 1479 |
| BstSCI | CCNGG | 7 cut(s) | 52, 119, 120, 125, 1922, 2521, 3292 |
| BstSFI | CTRYAG | 4 cut(s) | 1293, 1656, 2221, 3263 |
| BstSLI | GKGCMC | 2 cut(s) | 1772, 2482 |
| BstUI | CGCG | 1 cut(s) | 66 |
| BstV2I | GAAGAC | 3 cut(s) | 363, 1202, 1457 |
| BstX2I | RGATCY | 2 cut(s) | 298, 1571 |
| BstYI | RGATCY | 2 cut(s) | 298, 1571 |
| BstZI | CGGCCG | 1 cut(s) | 50 |
| BsuI | GTATCC | 1 cut(s) | 1912 |
| BsuRI | GGCC | 6 cut(s) | 52, 114, 125, 2493, 2886, 2921 |
| BtgI | CCRYGG | 1 cut(s) | 3247 |
| BtgZI | GCGATG | 3 cut(s) | 303, 1366, 2472 |
| BtrI | CACGTC | 2 cut(s) | 1545, 2102 |
| BtsCI | GGATG | 7 cut(s) | 1468, 1932, 1969, 2480, 2632, 2952, 3158 |
| BtsI | GCAGTG | 1 cut(s) | 675 |
| BtsIMutI | CAGTG | 7 cut(s) | 675, 889, 1342, 2206, 2480, 2552, 3264 |
| Cac8I | GCNNGC | 7 cut(s) | 185, 1398, 1477, 1518, 2089, 2455, 3141 |
| CciI | TCATGA | 2 cut(s) | 1792, 2848 |
| CfoI | GCGC | 3 cut(s) | 66, 1166, 3285 |
| Cfr10I | RCCGGY | 4 cut(s) | 214, 689, 941, 1708 |
| Cfr13I | GGNCC | 7 cut(s) | 46, 112, 117, 123, 2519, 2744, 2919 |
| Cfr9I | CCCGGG | 1 cut(s) | 120 |
| CsiI | ACCWGGT | 1 cut(s) | 3292 |
| CspAI | ACCGGT | 1 cut(s) | 941 |
| DpnI | GATC | 7 cut(s) | 300, 1276, 1573, 1597, 2409, 2544, 2853 |
| DpnII | GATC | 7 cut(s) | 298, 1274, 1571, 1595, 2407, 2542, 2851 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2006 |
| EaeI | YGGCCR | 1 cut(s) | 50 |
| EagI | CGGCCG | 1 cut(s) | 50 |
| Eam1104I | CTCTTC | 6 cut(s) | 278, 599, 992, 1865, 1897, 2151 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2006 |
| EarI | CTCTTC | 6 cut(s) | 278, 599, 992, 1865, 1897, 2151 |
| EciI | GGCGGA | 3 cut(s) | 107, 350, 616 |
| EclXI | CGGCCG | 1 cut(s) | 50 |
| Eco130I | CCWWGG | 7 cut(s) | 342, 977, 1497, 2261, 2829, 3058, 3247 |
| Eco147I | AGGCCT | 1 cut(s) | 2886 |
| Eco24I | GRGCYC | 1 cut(s) | 468 |
| Eco31I | GGTCTC | 3 cut(s) | 45, 103, 1631 |
| Eco47I | GGWCC | 4 cut(s) | 46, 117, 2519, 2744 |
| Eco52I | CGGCCG | 1 cut(s) | 50 |
| Eco57I | CTGAAG | 5 cut(s) | 80, 987, 1695, 1889, 1992 |
| Eco88I | CYCGRG | 3 cut(s) | 42, 120, 1244 |
| EcoRII | CCWGG | 3 cut(s) | 125, 2521, 3292 |
| EcoT14I | CCWWGG | 7 cut(s) | 342, 977, 1497, 2261, 2829, 3058, 3247 |
| EcoT22I | ATGCAT | 1 cut(s) | 2438 |
| EcoT38I | GRGCYC | 1 cut(s) | 468 |
| ErhI | CCWWGG | 7 cut(s) | 342, 977, 1497, 2261, 2829, 3058, 3247 |
| Esp3I | CGTCTC | 3 cut(s) | 642, 1175, 1993 |
| FaqI | GGGAC | 7 cut(s) | 2049, 2285, 2539, 2689, 3025, 3260, 3265 |
| FauI | CCCGC | 2 cut(s) | 435, 1248 |
| FauNDI | CATATG | 2 cut(s) | 2243, 3164 |
| FbaI | TGATCA | 1 cut(s) | 2851 |
| FblI | GTMKAC | 1 cut(s) | 2189 |
| FokI | GGATG | 7 cut(s) | 1475, 1939, 1976, 2487, 2619, 2959, 3145 |
| FriOI | GRGCYC | 1 cut(s) | 468 |
| FspBI | CTAG | 8 cut(s) | 321, 755, 978, 1028, 1136, 1593, 1763, 3035 |
| GlaI | GCGC | 3 cut(s) | 65, 1165, 3284 |
| GsaI | CCCAGC | 1 cut(s) | 2946 |
| HaeIII | GGCC | 6 cut(s) | 52, 114, 125, 2493, 2886, 2921 |
| HhaI | GCGC | 3 cut(s) | 66, 1166, 3285 |
| Hin6I | GCGC | 3 cut(s) | 64, 1164, 3283 |
| HinP1I | GCGC | 3 cut(s) | 64, 1164, 3283 |
| HincII | GTYRAC | 1 cut(s) | 1110 |
| HindII | GTYRAC | 1 cut(s) | 1110 |
| HindIII | AAGCTT | 3 cut(s) | 845, 2165, 2693 |
| Hpy188I | TCNGA | 6 cut(s) | 22, 1009, 1675, 1696, 3078, 3189 |
| Hpy99I | CGWCG | 5 cut(s) | 26, 203, 314, 317, 2106 |
| HpyCH4IV | ACGT | 6 cut(s) | 408, 1417, 1544, 2101, 3120, 3226 |
| HpySE526I | ACGT | 6 cut(s) | 408, 1417, 1544, 2101, 3120, 3226 |
| HspAI | GCGC | 3 cut(s) | 64, 1164, 3283 |
| KpnI | GGTACC | 1 cut(s) | 1821 |
| Ksp22I | TGATCA | 1 cut(s) | 2851 |
| Kzo9I | GATC | 7 cut(s) | 298, 1274, 1571, 1595, 2407, 2542, 2851 |
| LguI | GCTCTTC | 2 cut(s) | 278, 599 |
| LmnI | GCTCC | 4 cut(s) | 445, 463, 1622, 2866 |
| LweI | GCATC | 8 cut(s) | 268, 602, 1343, 1917, 2040, 2347, 2423, 3167 |
| MabI | ACCWGGT | 1 cut(s) | 3292 |
| MaeI | CTAG | 8 cut(s) | 321, 755, 978, 1028, 1136, 1593, 1763, 3035 |
| MaeII | ACGT | 6 cut(s) | 408, 1417, 1544, 2101, 3120, 3226 |
| MaeIII | GTNAC | 8 cut(s) | 349, 1258, 1340, 1906, 2446, 2962, 3068, 3227 |
| MalI | GATC | 7 cut(s) | 300, 1276, 1573, 1597, 2409, 2544, 2853 |
| MboI | GATC | 7 cut(s) | 298, 1274, 1571, 1595, 2407, 2542, 2851 |
| MfeI | CAATTG | 1 cut(s) | 1561 |
| MflI | RGATCY | 2 cut(s) | 298, 1571 |
| MhlI | GDGCHC | 3 cut(s) | 468, 1772, 2482 |
| MlyI | GAGTC | 6 cut(s) | 347, 629, 875, 1903, 2711, 2923 |
| MmeI | TCCRAC | 1 cut(s) | 45 |
| Mph1103I | ATGCAT | 1 cut(s) | 2438 |
| MroXI | GAANNNNTTC | 2 cut(s) | 16, 2624 |
| MseI | TTAA | 3 cut(s) | 849, 1269, 2162 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3163 |
| MspA1I | CMGCKG | 5 cut(s) | 571, 1172, 1255, 2387, 2990 |
| MspR9I | CCNGG | 7 cut(s) | 54, 121, 122, 127, 1924, 2523, 3294 |
| MunI | CAATTG | 1 cut(s) | 1561 |
| Mva1269I | GAATGC | 1 cut(s) | 2436 |
| MvaI | CCWGG | 3 cut(s) | 127, 2523, 3294 |
| MvnI | CGCG | 1 cut(s) | 66 |
| NciI | CCSGG | 4 cut(s) | 54, 121, 122, 1924 |
| NcoI | CCATGG | 1 cut(s) | 3247 |
| NdeI | CATATG | 2 cut(s) | 2243, 3164 |
| NdeII | GATC | 7 cut(s) | 298, 1274, 1571, 1595, 2407, 2542, 2851 |
| NlaIV | GGNNCC | 8 cut(s) | 19, 47, 119, 465, 507, 1819, 2282, 2920 |
| NmuCI | GTSAC | 4 cut(s) | 349, 1258, 1340, 2446 |
| NsiI | ATGCAT | 1 cut(s) | 2438 |
| NspI | RCATGY | 2 cut(s) | 1400, 1479 |
| PaeI | GCATGC | 2 cut(s) | 1400, 1479 |
| PaeR7I | CTCGAG | 1 cut(s) | 1244 |
| PagI | TCATGA | 2 cut(s) | 1792, 2848 |
| PceI | AGGCCT | 1 cut(s) | 2886 |
| PciSI | GCTCTTC | 2 cut(s) | 278, 599 |
| PctI | GAATGC | 1 cut(s) | 2436 |
| PdmI | GAANNNNTTC | 2 cut(s) | 16, 2624 |
| PfeI | GAWTC | 9 cut(s) | 479, 704, 956, 1004, 1838, 2879, 2975, 3190, 3323 |
| PflFI | GACNNNGTC | 1 cut(s) | 1757 |
| PinAI | ACCGGT | 1 cut(s) | 941 |
| PleI | GAGTC | 6 cut(s) | 346, 628, 874, 1902, 2710, 2923 |
| PpsI | GAGTC | 6 cut(s) | 346, 628, 874, 1902, 2710, 2923 |
| Psp1406I | AACGTT | 2 cut(s) | 408, 3226 |
| Psp6I | CCWGG | 3 cut(s) | 125, 2521, 3292 |
| PspFI | CCCAGC | 1 cut(s) | 2942 |
| PspGI | CCWGG | 3 cut(s) | 125, 2521, 3292 |
| PspN4I | GGNNCC | 8 cut(s) | 19, 47, 119, 465, 507, 1819, 2282, 2920 |
| PspPI | GGNCC | 7 cut(s) | 46, 112, 117, 123, 2519, 2744, 2919 |
| PstI | CTGCAG | 3 cut(s) | 1297, 2225, 3267 |
| PsuI | RGATCY | 2 cut(s) | 298, 1571 |
| PsyI | GACNNNGTC | 1 cut(s) | 1757 |
| PvuII | CAGCTG | 3 cut(s) | 1172, 2387, 2990 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3163 |
| SapI | GCTCTTC | 2 cut(s) | 278, 599 |
| SaqAI | TTAA | 3 cut(s) | 849, 1269, 2162 |
| Sau3AI | GATC | 7 cut(s) | 298, 1274, 1571, 1595, 2407, 2542, 2851 |
| Sau96I | GGNCC | 7 cut(s) | 46, 112, 117, 123, 2519, 2744, 2919 |
| SchI | GAGTC | 6 cut(s) | 347, 629, 875, 1903, 2711, 2923 |
| ScrFI | CCNGG | 7 cut(s) | 54, 121, 122, 127, 1924, 2523, 3294 |
| SduI | GDGCHC | 3 cut(s) | 468, 1772, 2482 |
| SexAI | ACCWGGT | 1 cut(s) | 3292 |
| SfaNI | GCATC | 8 cut(s) | 268, 602, 1343, 1917, 2040, 2347, 2423, 3167 |
| SfcI | CTRYAG | 4 cut(s) | 1293, 1656, 2221, 3263 |
| Sfr274I | CTCGAG | 1 cut(s) | 1244 |
| SinI | GGWCC | 4 cut(s) | 46, 117, 2519, 2744 |
| SlaI | CTCGAG | 1 cut(s) | 1244 |
| SmaI | CCCGGG | 1 cut(s) | 122 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3163 |
| SmlI | CTYRAG | 3 cut(s) | 1244, 1439, 2931 |
| SmoI | CTYRAG | 3 cut(s) | 1244, 1439, 2931 |
| SphI | GCATGC | 2 cut(s) | 1400, 1479 |
| SseBI | AGGCCT | 1 cut(s) | 2886 |
| SspMI | CTAG | 8 cut(s) | 321, 755, 978, 1028, 1136, 1593, 1763, 3035 |
| StuI | AGGCCT | 1 cut(s) | 2886 |
| StyD4I | CCNGG | 7 cut(s) | 52, 119, 120, 125, 1922, 2521, 3292 |
| StyI | CCWWGG | 7 cut(s) | 342, 977, 1497, 2261, 2829, 3058, 3247 |
| TaiI | ACGT | 6 cut(s) | 411, 1420, 1547, 2104, 3123, 3229 |
| TaqI | TCGA | 8 cut(s) | 482, 524, 596, 1038, 1245, 1897, 2343, 2889 |
| TaqII | GACCGA | 3 cut(s) | 576, 822, 1095 |
| TatI | WGTACW | 3 cut(s) | 1428, 2949, 3216 |
| TauI | GCSGC | 5 cut(s) | 190, 335, 571, 817, 1090 |
| TfiI | GAWTC | 9 cut(s) | 479, 704, 956, 1004, 1838, 2879, 2975, 3190, 3323 |
| Tru1I | TTAA | 3 cut(s) | 849, 1269, 2162 |
| Tru9I | TTAA | 3 cut(s) | 849, 1269, 2162 |
| TscAI | CASTG | 7 cut(s) | 675, 889, 1349, 2206, 2487, 2552, 3264 |
| TseFI | GTSAC | 4 cut(s) | 349, 1258, 1340, 2446 |
| Tsp45I | GTSAC | 4 cut(s) | 349, 1258, 1340, 2446 |
| TspGWI | ACGGA | 3 cut(s) | 24, 697, 1374 |
| TspMI | CCCGGG | 1 cut(s) | 120 |
| TspRI | CASTG | 7 cut(s) | 675, 889, 1349, 2206, 2487, 2552, 3264 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1757 |
| VneI | GTGCAC | 1 cut(s) | 2478 |
| VpaK11BI | GGWCC | 4 cut(s) | 46, 117, 2519, 2744 |
| XapI | RAATTY | 3 cut(s) | 2558, 3126, 3176 |
| XceI | RCATGY | 2 cut(s) | 1400, 1479 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2619 |
| XhoI | CTCGAG | 1 cut(s) | 1244 |
| XmaI | CCCGGG | 1 cut(s) | 120 |
| XmaJI | CCTAGG | 1 cut(s) | 977 |
| XmiI | GTMKAC | 1 cut(s) | 2189 |
| XmnI | GAANNNNTTC | 2 cut(s) | 16, 2624 |
| XspI | CTAG | 8 cut(s) | 321, 755, 978, 1028, 1136, 1593, 1763, 3035 |
| Zsp2I | ATGCAT | 1 cut(s) | 2438 |