Rh5DG487100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000140
Physical Location & Seq
Forward (+)
76632150 .. 76633763
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG487100.1

Sequence Viewer

Length: 1062 bp
ATGGTAAGACCCAAAAAGCAGAAATGGGATGGTGGAGAAGAGATGGTCGGAGAGAAAAAGGGTTTAAGTGATTTACCTGATGTGGTTATTGCAAAAATCATCTCCTCACTTCCAACGAAAGAGGCTATTAGAACAAGCATACTGTCTAAAAGATGGGAATACCTATGGACATCAATTCCCAATCTTGAATTTTATCCAGGGAATGCTAAGAGATCTCTCTTGGTGAATGTTGTAGATAGAGCACTTCTTTTACGCGGCCCTTCTGATATAAAACGGTTCGATCTTTTGTTTCCGGTGCTCGGTGATGCATCTCATGTTCATGCGTGGATCTCTGCCATAGTACGGCGCAATGTTGAAGACTTTTCTATAGGGCTGGAAAGCCACCAGGAACCATTTTCATTGCCTCATTCTTTACTTACTTCTGCCACATTGAAAGTGCTGAACCTGTATCTCCCCTGTCACTTGCTAAATGACTATTGCTTTTGTAACTCATCAGTACATGAGGCTCATATTAGTATTGATGATACAGAGGGCTCCAGACTTAAAAGTTACCTGTTTCATAAGCTTCTTAGAGGGCTCTCTACTGTGAAGAAACTAACTATATTTCATATGAACTTTGGGGTGGCTCTAACTGCTGCATCAGAACTTCTTGCCCAGATGCCCATGTTCAATGATCTAGCCACCTTGATATTCGATGGGAGTGCGACAGATCTTATACTATCATTGAGGATACTCCAAAACTGTCCTCGTCTTCGGGATCTGGTATTCTGTGAGGGGGTTAGGCTGTGCTCAGATGATGCAAAAGATGATGGAATGTTGGATATTCCACTGCCTCCATGTTTCTGGACCAGTCTTAAAGAGATTCAAGTCGTTGAATTTTGTGGAAACAAGAATGAGGTTCGTGCATTAAGGATTTTGCTAAAAAATGCAATTGTCTTGGAGAATATGTTTGTAAGCTACTGCGGTACCCTTGAAGGAAAAACTGAGAAGAAAAGGGATCTTAACAAACAGATATCGGATCTCCCAAAAGGGTCACAAAGCTGTGAAATTGATTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

353

Amino Acids

39.77

Weight (kDa)

6.52

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 61 1.5e-08 F-box domain
FBD PF08387 277 - 316 9e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 965
AccII CGCG 1 cut(s) 255
AciI CCGC 2 cut(s) 255, 963
AclWI GGATC 4 cut(s) 335, 765, 1005, 1026
AcsI RAATTY 2 cut(s) 188, 875
AfaI GTAC 3 cut(s) 342, 498, 967
AfiI CCNNNNNNNGG 2 cut(s) 299, 342
AgsI TTSAA 7 cut(s) 188, 356, 433, 670, 866, 875, 974
AjnI CCWGG 2 cut(s) 196, 384
AluBI AGCT 3 cut(s) 565, 957, 1041
AluI AGCT 3 cut(s) 565, 957, 1041
Alw21I GWGCWC 3 cut(s) 244, 300, 791
AlwI GGATC 4 cut(s) 335, 765, 1005, 1026
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 2 cut(s) 188, 875
Asp718I GGTACC 1 cut(s) 965
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 257, 846
AsuHPI GGTGA 2 cut(s) 235, 314
AvaII GGWCC 1 cut(s) 846
BaeI ACNNNNGTAYC 2 cut(s) 949, 982
BanI GGYRCC 1 cut(s) 965
BanII GRGCYC 2 cut(s) 536, 579
BbsI GAAGAC 2 cut(s) 363, 743
Bbv12I GWGCWC 3 cut(s) 244, 300, 791
BbvI GCAGC 1 cut(s) 622
BccI CCATC 5 cut(s) 23, 37, 147, 689, 803
BceAI ACGGC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 2 cut(s) 198, 386
BciVI GTATCC 1 cut(s) 723
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 366
BfuI GTATCC 1 cut(s) 723
BglII AGATCT 2 cut(s) 212, 709
BisI GCNGC 2 cut(s) 256, 636
BlsI GCNGC 2 cut(s) 257, 637
Bme1390I CCNGG 2 cut(s) 198, 386
Bme18I GGWCC 1 cut(s) 846
BmgT120I GGNCC 2 cut(s) 257, 846
BmiI GGNNCC 3 cut(s) 390, 535, 967
BmrFI CCNGG 2 cut(s) 198, 386
BmsI GCATC 5 cut(s) 295, 317, 647, 648, 787
BpiI GAAGAC 2 cut(s) 363, 743
BpmI CTGGAG 1 cut(s) 520
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 932, 962
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 342
Bse1I ACTGG 1 cut(s) 849
Bse3DI GCAATG 2 cut(s) 355, 398
BseBI CCWGG 2 cut(s) 198, 386
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 299, 342
BseMI GCAATG 2 cut(s) 355, 398
BseMII CTCAG 2 cut(s) 804, 975
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 622
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 965
BsiHKAI GWGCWC 3 cut(s) 244, 300, 791
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 299, 342
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 5 cut(s) 244, 300, 536, 579, 791
Bsp143I GATC 8 cut(s) 212, 280, 327, 673, 709, 757, 997, 1018
BspACI CCGC 2 cut(s) 255, 963
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 803, 976
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 390, 535, 967
BspPI GGATC 4 cut(s) 335, 765, 1005, 1026
BspT107I GGYRCC 1 cut(s) 965
BsrDI GCAATG 2 cut(s) 355, 398
BsrI ACTGG 1 cut(s) 849
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 8 cut(s) 212, 280, 327, 673, 709, 757, 997, 1018
Bst2UI CCWGG 2 cut(s) 198, 386
Bst4CI ACNGT 4 cut(s) 144, 276, 586, 743
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 4 cut(s) 207, 569, 790, 984
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 8 cut(s) 215, 283, 330, 676, 712, 760, 1000, 1021
BstMBI GATC 8 cut(s) 212, 280, 327, 673, 709, 757, 997, 1018
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 2 cut(s) 198, 386
BstSCI CCNGG 2 cut(s) 196, 384
BstSFI CTRYAG 1 cut(s) 366
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 2 cut(s) 363, 743
BstX2I RGATCY 6 cut(s) 212, 327, 709, 757, 997, 1018
BstXI CCANNNNNNTGG 1 cut(s) 843
BstYI RGATCY 6 cut(s) 212, 327, 709, 757, 997, 1018
BsuI GTATCC 1 cut(s) 723
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 1 cut(s) 827
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 257, 846
Csp6I GTAC 3 cut(s) 341, 497, 966
CviAII CATG 5 cut(s) 314, 320, 500, 664, 837
CviQI GTAC 3 cut(s) 341, 497, 966
DdeI CTNAG 4 cut(s) 207, 569, 790, 984
DpnI GATC 8 cut(s) 214, 282, 329, 675, 711, 759, 999, 1020
DpnII GATC 8 cut(s) 212, 280, 327, 673, 709, 757, 997, 1018
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 536, 579
Eco32I GATATC 1 cut(s) 1014
Eco47I GGWCC 1 cut(s) 846
EcoRII CCWGG 2 cut(s) 196, 384
EcoRV GATATC 1 cut(s) 1014
EcoT22I ATGCAT 1 cut(s) 310
EcoT38I GRGCYC 2 cut(s) 536, 579
FaeI CATG 5 cut(s) 317, 323, 503, 667, 840
FatI CATG 5 cut(s) 313, 319, 499, 663, 836
FauNDI CATATG 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 256, 636
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 2 cut(s) 536, 579
Fsp4HI GCNGC 2 cut(s) 256, 636
FspBI CTAG 1 cut(s) 677
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 256, 636
GsuI CTGGAG 1 cut(s) 520
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 293
HhaI GCGC 1 cut(s) 348
Hin1II CATG 5 cut(s) 317, 323, 503, 667, 840
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 1 cut(s) 862
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 235, 314
Hpy188I TCNGA 5 cut(s) 50, 265, 643, 793, 1018
Hpy188III TCNNGA 4 cut(s) 185, 537, 755, 844
HpyAV CCTTC 2 cut(s) 270, 968
HpyCH4III ACNGT 4 cut(s) 144, 276, 586, 743
HpyCH4V TGCA 6 cut(s) 92, 308, 638, 800, 905, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 4 cut(s) 207, 569, 790, 984
Hsp92II CATG 5 cut(s) 317, 323, 503, 667, 840
HspAI GCGC 1 cut(s) 346
KpnI GGTACC 1 cut(s) 969
Kzo9I GATC 8 cut(s) 212, 280, 327, 673, 709, 757, 997, 1018
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 5 cut(s) 295, 317, 647, 648, 787
MaeI CTAG 1 cut(s) 677
MaeIII GTNAC 4 cut(s) 458, 485, 548, 1032
MalI GATC 8 cut(s) 214, 282, 329, 675, 711, 759, 999, 1020
MboI GATC 8 cut(s) 212, 280, 327, 673, 709, 757, 997, 1018
MboII GAAGA 5 cut(s) 50, 368, 601, 743, 1000
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 6 cut(s) 212, 327, 709, 757, 997, 1018
MhlI GDGCHC 5 cut(s) 244, 300, 536, 579, 791
MluCI AATT 5 cut(s) 174, 188, 875, 930, 1047
MmeI TCCRAC 3 cut(s) 28, 137, 798
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 6 cut(s) 65, 543, 855, 908, 1002, 1060
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 198, 386
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 198, 386
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 632
NdeI CATATG 1 cut(s) 609
NdeII GATC 8 cut(s) 212, 280, 327, 673, 709, 757, 997, 1018
NlaIII CATG 5 cut(s) 317, 323, 503, 667, 840
NlaIV GGNNCC 3 cut(s) 390, 535, 967
NmuCI GTSAC 2 cut(s) 458, 1032
NsiI ATGCAT 1 cut(s) 310
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 862
PkrI GCNGC 2 cut(s) 257, 637
Psp6I CCWGG 2 cut(s) 196, 384
PspGI CCWGG 2 cut(s) 196, 384
PspN4I GGNNCC 3 cut(s) 390, 535, 967
PspPI GGNCC 2 cut(s) 257, 846
PsuI RGATCY 6 cut(s) 212, 327, 709, 757, 997, 1018
RsaI GTAC 3 cut(s) 342, 498, 967
RsaNI GTAC 3 cut(s) 341, 497, 966
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 6 cut(s) 65, 543, 855, 908, 1002, 1060
SatI GCNGC 2 cut(s) 256, 636
Sau3AI GATC 8 cut(s) 212, 280, 327, 673, 709, 757, 997, 1018
Sau96I GGNCC 2 cut(s) 257, 846
ScrFI CCNGG 2 cut(s) 198, 386
SduI GDGCHC 5 cut(s) 244, 300, 536, 579, 791
SetI ASST 9 cut(s) 79, 165, 447, 555, 567, 686, 900, 959, 1043
SfaNI GCATC 5 cut(s) 295, 317, 647, 648, 787
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 846
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 5 cut(s) 174, 188, 875, 930, 1047
SsiI CCGC 2 cut(s) 255, 963
SspMI CTAG 1 cut(s) 677
StyD4I CCNGG 2 cut(s) 196, 384
TaaI ACNGT 4 cut(s) 144, 276, 586, 743
TaqI TCGA 2 cut(s) 279, 693
TasI AATT 5 cut(s) 174, 188, 875, 930, 1047
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 1 cut(s) 862
Tru1I TTAA 6 cut(s) 65, 543, 855, 908, 1002, 1060
Tru9I TTAA 6 cut(s) 65, 543, 855, 908, 1002, 1060
TscAI CASTG 1 cut(s) 834
TseFI GTSAC 2 cut(s) 458, 1032
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 2 cut(s) 458, 1032
TspDTI ATGAA 5 cut(s) 308, 387, 548, 596, 626
TspRI CASTG 1 cut(s) 834
VpaK11BI GGWCC 1 cut(s) 846
XapI RAATTY 2 cut(s) 188, 875
XspI CTAG 1 cut(s) 677
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.