Rh5DG487400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000140
Physical Location & Seq
Forward (+)
76663101 .. 76664647
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG487400.1

Sequence Viewer

Length: 1320 bp
ATGGAAGGAGGCATGAAGAGTTTAAGCAATTTACCTGATGTGGTTCTTGAAAAAATCGTCTCCTTGCTTTCGACAGAGAATGCTATCAGAACAAGCATACTTTCGAAAAGATGGGAATACCTATGGACATCAATTCCCACACTCAACTTTTTTCAAGGGACTCTTAATAAGAGAACTGCCATGGTGAATGCGTTGGAAAGAGCACTTATGCTTCGTCGTGGTGTTGATATAAAAAAGTTTACTCTTTGCTTTGAAGTGCTTGGTGATACATCTCTTCTTAATCCATGGATCTCTGCCATAGTAAGGCTCAATGTTGAAGAGCTTTTTCTTGGCCTGTATAGCTTGAATGGACCGCTTTGTTTGCCTCATTCTTTGTTTAGTTCCTCAACACTGAAGGACTTGCAACTAGATGTGCCCTTTATTTTCAAAGTTCCTTCTACTGTTTGTCTCTCAAGTTTAAGGAGATTGACACTTAGGTCTGTGGTGTTTTCTGATGAATACTCTACCCAGCAACTCTTTTCTGGTTGTCCAGTTCTTGAGAAATTATCTCTACATAACTGCAATTGGGGGAATCTCAAGTTTGTGAGTATTTGTGCTCCAAAGCTTTTGAGATTGATCATAAATGAAAGTGATTTGCAAATTTCCAAAGATGCAGGCGGTTGCCGGATTATGGTGTTTGGTGTCAGTCTTACATATTTTTCTTATGCGGGTGAATTCCTAAATGAATATACCTTTCATAGCTCATCAGTAAATCAGGCTGAGATTAATGCTTGTCCTACTAAGATGTGGAGACATTTGAGTTACCGATTGTATAAGCTTTTTAGAGGGCTATCTAGTCTGAAGATACTAACTACCTGTTCTTATTTCTTTAAGGTCATGCTGGCTAATGTATCAGAGCTGCTTGCCCAGATGCCCTTGTTCAATGATCTAACCACGTTGGTATTGGATTCAGTACGAGTAGATCTTGGTTGTGAAGGACTATTGAGGATGCTCCAAAACTGTCCCTGTCTTCAAACTCTCGTATTCAGTGAGGGGATTAGCCTGTCCTCTGGTGATGCAAATGATGATGGGGTTTTGGACCCACTGCCTCCTTGTTTCTTGATAAGTCTCAAAGAGATTAAAGTCTATGCATTTTATGGAGATGAGGATGAAATTTATGCAGTAAAGAGTTTGCTTAAGACTGCAATGGTATTGGAGAAGGTGATTGTAACTTTCGCTAAGTCTCTTGAAGGAGGACCAGAGGAGATAAATGATGTTGGCAGACAGTTGAGTGATTTCCCAATGGGGTCAGAAATCTGTGAAATTGTTCTTCAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

439

Amino Acids

49.2

Weight (kDa)

5.6

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 45 1.5e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 73 - 343 2.2e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 94 - 212 9.4e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 475
AciI CCGC 3 cut(s) 353, 657, 707
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 3 cut(s) 639, 713, 1152
AcuI CTGAAG 3 cut(s) 413, 860, 1295
AfaI GTAC 2 cut(s) 954, 1316
AfiI CCNNNNNNNGG 2 cut(s) 303, 670
AflII CTTAAG 1 cut(s) 1175
AgsI TTSAA 9 cut(s) 50, 155, 254, 317, 346, 427, 922, 1013, 1229
AluBI AGCT 6 cut(s) 322, 342, 604, 741, 817, 898
AluI AGCT 6 cut(s) 322, 342, 604, 741, 817, 898
Alw21I GWGCWC 2 cut(s) 205, 598
Alw26I GTCTC 5 cut(s) 64, 452, 784, 1112, 1227
AlwI GGATC 1 cut(s) 296
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 898
ApoI RAATTY 3 cut(s) 639, 713, 1152
AseI ATTAAT 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 1305
AspS9I GGNCC 3 cut(s) 350, 1078, 1235
AsuHPI GGTGA 5 cut(s) 196, 275, 722, 1064, 1213
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 3 cut(s) 350, 1078, 1235
BaeGI GKGCMC 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 1001
Bbv12I GWGCWC 2 cut(s) 205, 598
BbvI GCAGC 1 cut(s) 885
BccI CCATC 2 cut(s) 105, 1061
BclI TGATCA 1 cut(s) 615
BcoDI GTCTC 5 cut(s) 64, 452, 784, 1112, 1227
BfaI CTAG 2 cut(s) 407, 834
BfrI CTTAAG 1 cut(s) 1175
BglII AGATCT 1 cut(s) 961
BisI GCNGC 1 cut(s) 899
BlsI GCNGC 1 cut(s) 900
BmcAI AGTACT 1 cut(s) 1316
Bme18I GGWCC 3 cut(s) 350, 1078, 1235
BmgT120I GGNCC 3 cut(s) 350, 1078, 1235
BmiI GGNNCC 1 cut(s) 1080
BmsI GCATC 4 cut(s) 640, 900, 978, 1045
BpiI GAAGAC 1 cut(s) 1001
Bpu14I TTCGAA 1 cut(s) 104
BpuEI CTTGAG 3 cut(s) 436, 557, 560
BsaJI CCNNGG 2 cut(s) 180, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 670
Bse1I ACTGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 1191
BseDI CCNNGG 2 cut(s) 180, 284
BseGI GGATG 2 cut(s) 993, 1153
BseLI CCNNNNNNNGG 2 cut(s) 303, 670
BseMI GCAATG 1 cut(s) 1191
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 1 cut(s) 530
BseRI GAGGAG 1 cut(s) 1256
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 1 cut(s) 885
BseYI CCCAGC 1 cut(s) 507
BshFI GGCC 1 cut(s) 333
BsiHKAI GWGCWC 2 cut(s) 205, 598
BsiSI CCGG 1 cut(s) 664
BslFI GGGAC 2 cut(s) 172, 987
BslI CCNNNNNNNGG 2 cut(s) 303, 670
BsmAI GTCTC 5 cut(s) 64, 452, 784, 1112, 1227
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 2 cut(s) 172, 987
BsmI GAATGC 2 cut(s) 85, 193
BsnI GGCC 1 cut(s) 333
Bsp119I TTCGAA 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 205, 417, 598
Bsp143I GATC 4 cut(s) 288, 615, 925, 961
Bsp19I CCATGG 2 cut(s) 180, 284
BspACI CCGC 3 cut(s) 353, 657, 707
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 751
BspLI GGNNCC 1 cut(s) 1080
BspPI GGATC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 104
BspTI CTTAAG 1 cut(s) 1175
BsrDI GCAATG 1 cut(s) 1191
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 2 cut(s) 180, 284
BssMI GATC 4 cut(s) 288, 615, 925, 961
BssT1I CCWWGG 2 cut(s) 180, 284
Bst4CI ACNGT 3 cut(s) 442, 1001, 1266
Bst6I CTCTTC 3 cut(s) 11, 279, 312
BstAFI CTTAAG 1 cut(s) 1175
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 655, 882, 903
BstDEI CTNAG 4 cut(s) 473, 759, 780, 1218
BstDSI CCRYGG 2 cut(s) 180, 284
BstF5I GGATG 2 cut(s) 993, 1153
BstKTI GATC 4 cut(s) 291, 618, 928, 964
BstMAI GTCTC 5 cut(s) 64, 452, 784, 1112, 1227
BstMBI GATC 4 cut(s) 288, 615, 925, 961
BstMWI GCNNNNNNNGC 2 cut(s) 339, 361
BstSLI GKGCMC 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 885
BstV2I GAAGAC 1 cut(s) 1001
BstX2I RGATCY 2 cut(s) 288, 961
BstYI RGATCY 2 cut(s) 288, 961
BsuRI GGCC 1 cut(s) 333
BtgI CCRYGG 2 cut(s) 180, 284
BtsCI GGATG 2 cut(s) 993, 1153
BtsI GCAGTG 1 cut(s) 1082
BtsIMutI CAGTG 3 cut(s) 389, 1033, 1082
Cac8I GCNNGC 3 cut(s) 655, 882, 903
Cfr13I GGNCC 3 cut(s) 350, 1078, 1235
Csp6I GTAC 2 cut(s) 953, 1315
CviAII CATG 4 cut(s) 13, 181, 285, 877
CviQI GTAC 2 cut(s) 953, 1315
DdeI CTNAG 4 cut(s) 473, 759, 780, 1218
DpnI GATC 4 cut(s) 290, 617, 927, 963
DpnII GATC 4 cut(s) 288, 615, 925, 961
DrdI GACNNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 3 cut(s) 11, 279, 312
EarI CTCTTC 3 cut(s) 11, 279, 312
Eco130I CCWWGG 2 cut(s) 180, 284
Eco47I GGWCC 3 cut(s) 350, 1078, 1235
Eco57I CTGAAG 3 cut(s) 413, 860, 1295
EcoRI GAATTC 1 cut(s) 713
EcoT14I CCWWGG 2 cut(s) 180, 284
EcoT22I ATGCAT 1 cut(s) 1132
ErhI CCWWGG 2 cut(s) 180, 284
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 4 cut(s) 16, 184, 288, 880
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 2 cut(s) 172, 987
FatI CATG 4 cut(s) 12, 180, 284, 876
FauI CCCGC 1 cut(s) 700
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 1 cut(s) 899
FokI GGATG 2 cut(s) 1000, 1160
Fsp4HI GCNGC 1 cut(s) 899
FspBI CTAG 2 cut(s) 407, 834
GluI GCNGC 1 cut(s) 899
GsaI CCCAGC 1 cut(s) 511
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 664
Hin1II CATG 4 cut(s) 16, 184, 288, 880
HindIII AAGCTT 2 cut(s) 602, 815
HinfI GANTC 3 cut(s) 160, 571, 947
HpaII CCGG 1 cut(s) 664
HphI GGTGA 5 cut(s) 196, 275, 722, 1064, 1213
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 5 cut(s) 89, 493, 840, 895, 1291
Hpy188III TCNNGA 4 cut(s) 47, 536, 1099, 1226
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 5 cut(s) 388, 444, 968, 1192, 1223
HpyCH4III ACNGT 3 cut(s) 442, 1001, 1266
HpyCH4IV ACGT 1 cut(s) 935
HpyCH4V TGCA 8 cut(s) 403, 561, 637, 653, 1058, 1130, 1160, 1184
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 361
HpyF3I CTNAG 4 cut(s) 473, 759, 780, 1218
HpySE526I ACGT 1 cut(s) 935
Hsp92II CATG 4 cut(s) 16, 184, 288, 880
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 4 cut(s) 288, 615, 925, 961
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 601, 996
Lsp1109I GCAGC 1 cut(s) 885
LweI GCATC 4 cut(s) 640, 900, 978, 1045
MaeI CTAG 2 cut(s) 407, 834
MaeII ACGT 1 cut(s) 935
MaeIII GTNAC 2 cut(s) 800, 1207
MalI GATC 4 cut(s) 290, 617, 927, 963
MboI GATC 4 cut(s) 288, 615, 925, 961
MboII GAAGA 6 cut(s) 28, 266, 329, 853, 1001, 1301
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 2 cut(s) 288, 961
MhlI GDGCHC 3 cut(s) 205, 417, 598
MluCI AATT 8 cut(s) 28, 132, 542, 562, 639, 713, 1152, 1302
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 174
Mph1103I ATGCAT 1 cut(s) 1132
MroXI GAANNNNTTC 1 cut(s) 1305
MseI TTAA 8 cut(s) 23, 165, 279, 458, 765, 870, 1119, 1176
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 1 cut(s) 664
MunI CAATTG 1 cut(s) 562
Mva1269I GAATGC 2 cut(s) 85, 193
MwoI GCNNNNNNNGC 2 cut(s) 339, 361
NcoI CCATGG 2 cut(s) 180, 284
NdeII GATC 4 cut(s) 288, 615, 925, 961
NlaIII CATG 4 cut(s) 16, 184, 288, 880
NlaIV GGNNCC 1 cut(s) 1080
NsiI ATGCAT 1 cut(s) 1132
NspV TTCGAA 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 312
PctI GAATGC 2 cut(s) 85, 193
PdmI GAANNNNTTC 1 cut(s) 1305
PfeI GAWTC 2 cut(s) 571, 947
PkrI GCNGC 1 cut(s) 900
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 1080
PspPI GGNCC 3 cut(s) 350, 1078, 1235
PsuI RGATCY 2 cut(s) 288, 961
RsaI GTAC 2 cut(s) 954, 1316
RsaNI GTAC 2 cut(s) 953, 1315
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 8 cut(s) 23, 165, 279, 458, 765, 870, 1119, 1176
SatI GCNGC 1 cut(s) 899
Sau3AI GATC 4 cut(s) 288, 615, 925, 961
Sau96I GGNCC 3 cut(s) 350, 1078, 1235
ScaI AGTACT 1 cut(s) 1316
SchI GAGTC 1 cut(s) 154
SduI GDGCHC 3 cut(s) 205, 417, 598
SfaNI GCATC 4 cut(s) 640, 900, 978, 1045
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 3 cut(s) 350, 1078, 1235
SmlI CTYRAG 4 cut(s) 451, 536, 575, 1175
SmoI CTYRAG 4 cut(s) 451, 536, 575, 1175
Sse9I AATT 8 cut(s) 28, 132, 542, 562, 639, 713, 1152, 1302
SsiI CCGC 3 cut(s) 353, 657, 707
SspMI CTAG 2 cut(s) 407, 834
StyI CCWWGG 2 cut(s) 180, 284
TaaI ACNGT 3 cut(s) 442, 1001, 1266
TaiI ACGT 1 cut(s) 938
TaqI TCGA 2 cut(s) 71, 104
TasI AATT 8 cut(s) 28, 132, 542, 562, 639, 713, 1152, 1302
TatI WGTACW 1 cut(s) 1314
TfiI GAWTC 2 cut(s) 571, 947
Tru1I TTAA 8 cut(s) 23, 165, 279, 458, 765, 870, 1119, 1176
Tru9I TTAA 8 cut(s) 23, 165, 279, 458, 765, 870, 1119, 1176
TscAI CASTG 3 cut(s) 396, 1033, 1089
TseI GCWGC 1 cut(s) 898
TspDTI ATGAA 6 cut(s) 29, 510, 639, 725, 738, 1164
TspRI CASTG 3 cut(s) 396, 1033, 1089
Vha464I CTTAAG 1 cut(s) 1175
VpaK11BI GGWCC 3 cut(s) 350, 1078, 1235
VspI ATTAAT 1 cut(s) 765
XapI RAATTY 3 cut(s) 639, 713, 1152
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 1305
XspI CTAG 2 cut(s) 407, 834
ZrmI AGTACT 1 cut(s) 1316
Zsp2I ATGCAT 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.