Rh5AG034100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000140
Physical Location & Seq
Reverse (-)
2316953 .. 2317276
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG034100.1

Sequence Viewer

Length: 324 bp
ATGGATGCAAGTTCTCTAAAACCAAACCCCAAGAGGAAGAAGTTGGATATAGGCAGCAAGAGTTTAAGCAATTTACTGATGTTGTTAGAAATTCTCTCCCTGCTCCCAACAAAAGATGCTATTAGAACAAGCATATTGTCTAAAAGATGGGAACACCTGTGGACATCACTTCCTCATTTTCAGTTTGATGAAGGACCGCTACTTAAGAGATATCTCTTGGTAAATGCTGTGGATAGAGCACTTCTTCTTCGTGGCCCTGCTAATATAGAAGCTTTTGGTTTTAGTTTTACAGTGCTAGGTGATTCACATCGTGTTAATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

9.89

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 59 2.2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 90
AdeI CACNNNGTG 1 cut(s) 311
AflII CTTAAG 1 cut(s) 203
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 241
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 194, 254
AsuHPI GGTGA 1 cut(s) 311
AvaII GGWCC 1 cut(s) 194
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 141
BfaI CTAG 1 cut(s) 296
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 194, 254
BmsI GCATC 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 306
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 66
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 241
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 241
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 255
BspTI CTTAAG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 292
BstAFI CTTAAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 194, 254
CviJI RGCY 2 cut(s) 255, 272
CviKI_1 RGCY 2 cut(s) 255, 272
DraIII CACNNNGTG 1 cut(s) 311
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 194
EcoRV GATATC 1 cut(s) 212
EcoT22I ATGCAT 1 cut(s) 322
FaiI YATR 4 cut(s) 50, 134, 266, 322
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 1 cut(s) 302
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 8, 320
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 3 cut(s) 113, 170, 270
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 296
MboII GAAGA 3 cut(s) 49, 236, 239
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 2 cut(s) 70, 90
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 2 cut(s) 27, 183
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 3 cut(s) 65, 204, 315
MspCI CTTAAG 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 322
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 194, 254
SaqAI TTAA 3 cut(s) 65, 204, 315
SatI GCNGC 1 cut(s) 55
Sau96I GGNCC 2 cut(s) 194, 254
SduI GDGCHC 1 cut(s) 241
SetI ASST 3 cut(s) 159, 274, 301
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 70, 90
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 292
TasI AATT 2 cut(s) 70, 90
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 3 cut(s) 65, 204, 315
Tru9I TTAA 3 cut(s) 65, 204, 315
TscAI CASTG 1 cut(s) 297
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 1 cut(s) 297
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 90
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.