Rh5AG034000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000140
Physical Location & Seq
Reverse (-)
2315688 .. 2316829
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG034000.1

Sequence Viewer

Length: 867 bp
ATGCCCTGTGTTTTCAAGGTTCCTCGTACTATTTGCTTCTCAAGTCTAAAGTGCTTGAGTCTCAAGTCTGTGGTGTTTTCTGATGACTACTTAACCCAGCAGTTGTTTTCTGGTTTTCCAGTCCTGGAAGATCTATCTCTAACAGATTGCAATTGGACGAATATTATCAAGTTTATTAGTATTTATACTCCCAAGCTTTTGATCTTGACCATGATCGAAGGAGGTGTGGAAGTTGCGAGAGCTTCAAAATCTTCTGATGGATGTCAGATGATGGTATTTGGAGATAATCTCAAACAGTTTAATTATAAGGCTAAAATTCGTTCCTCCAAGAGATTGAGACGTACTGCTTACCGTTTGTATAAGCTTCTTAGAAGGCTCTCTACTGTGGAGCACCTAACTATCTCTTATTATATCTTTGAGGTGGTTCTAGATGATGCACCAGAACTTCTTGCCCAACTGCCTTTGTTCAATGATCTAATCACTTTGGAATTTGAAGGAAGTGTAAACATTGGTAGCAAACCATTCTTGTCGATGCTCCACAACTGTCCTTGTCTTCAAACTTTGATATTCCTTGAGGGGATTGAGGAGTCCTTAAATGTTGCTAAAGATGGAATTTTGGAGCCTTTGCCTCCATGCTTCCTCTCACATCTAAAAGAGATTGAAGTCTATGAATTTTATGGAGATGAGGATCACAAACATGCATTGAAAGTTTTGCTAAAGAATGCAATGGTTTTGGAGAATATGACCATAACTTGGGGCACGGATTTTGAAGTGGGGCTAGAGAGGAAAAGTGATGTTCATAAACAGTTATTCAATCTCCCTAGAGTATTAAAAAGCTGTGAAGTTGTTCTTGAACTTCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

288

Amino Acids

32.92

Weight (kDa)

5.92

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 209 - 250 1.6e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AccB7I CCANNNNNTGG 1 cut(s) 753
AclWI GGATC 1 cut(s) 696
AcsI RAATTY 4 cut(s) 315, 488, 612, 671
AfaI GTAC 2 cut(s) 28, 343
AfiI CCNNNNNNNGG 1 cut(s) 753
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 4 cut(s) 196, 242, 364, 837
AluI AGCT 4 cut(s) 196, 242, 364, 837
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 65, 331
AlwI GGATC 1 cut(s) 696
ApoI RAATTY 4 cut(s) 315, 488, 612, 671
Asp700I GAANNNNTTC 1 cut(s) 846
BaeGI GKGCMC 1 cut(s) 761
BarI GAAGNNNNNNTAC 2 cut(s) 364, 396
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 393
BccI CCATC 3 cut(s) 251, 265, 602
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 65, 331
BfaI CTAG 3 cut(s) 428, 779, 822
BglII AGATCT 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 21, 621
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 424, 522
BpiI GAAGAC 1 cut(s) 545
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpuEI CTTGAG 4 cut(s) 25, 47, 76, 593
BsaBI GATNNNNATC 1 cut(s) 687
Bsc4I CCNNNNNNNGG 1 cut(s) 753
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 266
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 1 cut(s) 753
BseMI GCAATG 1 cut(s) 732
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 761
BseYI CCCAGC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 393
BslI CCNNNNNNNGG 1 cut(s) 753
BsmAI GTCTC 2 cut(s) 65, 331
BsmBI CGTCTC 1 cut(s) 331
BsmI GAATGC 1 cut(s) 727
Bsp1286I GDGCHC 2 cut(s) 393, 761
Bsp143I GATC 5 cut(s) 130, 201, 213, 472, 688
BspLI GGNNCC 2 cut(s) 21, 621
BspPI GGATC 1 cut(s) 696
BsrDI GCAATG 1 cut(s) 732
BsrI ACTGG 1 cut(s) 119
BssMI GATC 5 cut(s) 130, 201, 213, 472, 688
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 5 cut(s) 297, 353, 385, 545, 807
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 5 cut(s) 133, 204, 216, 475, 691
BstMAI GTCTC 2 cut(s) 65, 331
BstMBI GATC 5 cut(s) 130, 201, 213, 472, 688
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 761
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtsCI GGATG 1 cut(s) 266
Csp6I GTAC 2 cut(s) 27, 342
CviAII CATG 3 cut(s) 211, 633, 698
CviJI RGCY 8 cut(s) 196, 242, 311, 364, 376, 622, 778, 837
CviKI_1 RGCY 8 cut(s) 196, 242, 311, 364, 376, 622, 778, 837
CviQI GTAC 2 cut(s) 27, 342
DdeI CTNAG 1 cut(s) 368
DpnI GATC 5 cut(s) 132, 203, 215, 474, 690
DpnII GATC 5 cut(s) 130, 201, 213, 472, 688
EcoRII CCWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 3 cut(s) 214, 636, 701
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FatI CATG 3 cut(s) 210, 632, 697
FokI GGATG 1 cut(s) 273
FspBI CTAG 3 cut(s) 428, 779, 822
GsaI CCCAGC 1 cut(s) 100
Hin1II CATG 3 cut(s) 214, 636, 701
HindIII AAGCTT 2 cut(s) 194, 362
HinfI GANTC 2 cut(s) 58, 587
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 3 cut(s) 82, 256, 267
Hpy188III TCNNGA 3 cut(s) 205, 428, 851
Hpy8I GTNNAC 1 cut(s) 505
HpyAV CCTTC 3 cut(s) 212, 366, 488
HpyCH4III ACNGT 5 cut(s) 297, 353, 385, 545, 807
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 150, 437, 701, 725
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 3 cut(s) 214, 636, 701
Kzo9I GATC 5 cut(s) 130, 201, 213, 472, 688
LmnI GCTCC 3 cut(s) 388, 540, 619
LpnPI CCDG 8 cut(s) 19, 96, 110, 110, 132, 137, 453, 845
LweI GCATC 2 cut(s) 424, 522
MaeI CTAG 3 cut(s) 428, 779, 822
MaeII ACGT 1 cut(s) 340
MalI GATC 5 cut(s) 132, 203, 215, 474, 690
MboI GATC 5 cut(s) 130, 201, 213, 472, 688
MboII GAAGA 3 cut(s) 140, 243, 545
MfeI CAATTG 1 cut(s) 151
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 2 cut(s) 393, 761
MluCI AATT 6 cut(s) 151, 301, 315, 488, 612, 671
MlyI GAGTC 2 cut(s) 67, 596
Mph1103I ATGCAT 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 846
MseI TTAA 4 cut(s) 92, 300, 593, 830
MslI CAYNNNNRTG 1 cut(s) 696
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 1 cut(s) 125
NdeII GATC 5 cut(s) 130, 201, 213, 472, 688
NlaIII CATG 3 cut(s) 214, 636, 701
NlaIV GGNNCC 2 cut(s) 21, 621
NsiI ATGCAT 1 cut(s) 703
NspI RCATGY 1 cut(s) 701
PctI GAATGC 1 cut(s) 727
PdmI GAANNNNTTC 1 cut(s) 846
PflMI CCANNNNNTGG 1 cut(s) 753
PfoI TCCNGGA 1 cut(s) 123
PleI GAGTC 2 cut(s) 66, 595
PpsI GAGTC 2 cut(s) 66, 595
PsiI TTATAA 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 21, 621
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 28, 343
RsaNI GTAC 2 cut(s) 27, 342
RseI CAYNNNNRTG 1 cut(s) 696
SaqAI TTAA 4 cut(s) 92, 300, 593, 830
Sau3AI GATC 5 cut(s) 130, 201, 213, 472, 688
SchI GAGTC 2 cut(s) 67, 596
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 2 cut(s) 393, 761
SetI ASST 9 cut(s) 21, 198, 226, 244, 343, 366, 396, 423, 839
SfaNI GCATC 2 cut(s) 424, 522
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 4 cut(s) 40, 55, 62, 572
SmoI CTYRAG 4 cut(s) 40, 55, 62, 572
Sse9I AATT 6 cut(s) 151, 301, 315, 488, 612, 671
SspI AATATT 1 cut(s) 163
SspMI CTAG 3 cut(s) 428, 779, 822
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 5 cut(s) 297, 353, 385, 545, 807
TaiI ACGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 216, 530
TasI AATT 6 cut(s) 151, 301, 315, 488, 612, 671
Tru1I TTAA 4 cut(s) 92, 300, 593, 830
Tru9I TTAA 4 cut(s) 92, 300, 593, 830
TspDTI ATGAA 2 cut(s) 684, 788
TspGWI ACGGA 1 cut(s) 776
Van91I CCANNNNNTGG 1 cut(s) 753
XapI RAATTY 4 cut(s) 315, 488, 612, 671
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 3 cut(s) 428, 779, 822
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.