RLG00000036089

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000140
Physical Location & Seq
Forward (+)
75648810 .. 75649533
724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036089

Sequence Viewer

Length: 408 bp
ATGAAACTGGTGGTCAGTTGCAGCTTTTCGGACGTTGTTGTCATCAATGGTAAATGGAGTCGGTCTCCAATATTTTCAGTACAAGGGCGGTTCCTAAATAATTATTACTTTTATAACTCATCGGTAGATAAGGCTGAGATTCTTATTCCTACTTCGAGATTGAGACATGTGGTTCAGACTAATGCATCAGAACTTCTCGCCCAGATGCCCTTGTTTAGTAATCTAGCCACTTTGATATTTGAAGAAAAGGAAGTAAATATTGGTTGCAAGGGACTACTGAGGATGCTCCAAAACTGTCCTTCTCTCCAAACTCTAGTATGCAGTGAGGGCATTACGCTGTCCTCCGATGATGCAGAAGATGATGGGGTGTTAAGAGCCACTGCCTCCTTGTTTCTTGAAAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

136

Amino Acids

14.98

Weight (kDa)

5.34

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AasI GACNNNNNNGTC 1 cut(s) 38
AciI CCGC 1 cut(s) 88
AfaI GTAC 1 cut(s) 81
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 242, 398
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 69, 157
ApeKI GCWGC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 69, 157
BfaI CTAG 2 cut(s) 224, 314
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 4 cut(s) 194, 195, 273, 340
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BsaI GGTCTC 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 126, 269
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 33
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 2 cut(s) 69, 157
BsmFI GGGAC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 69
BspACI CCGC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 127, 270
BspLI GGNNCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 135, 278
BstF5I GGATG 1 cut(s) 288
BstMAI GTCTC 2 cut(s) 69, 157
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 288
BtsI GCAGTG 2 cut(s) 328, 378
BtsIMutI CAGTG 2 cut(s) 328, 378
Csp6I GTAC 1 cut(s) 80
CviAII CATG 1 cut(s) 167
CviJI RGCY 4 cut(s) 24, 134, 227, 377
CviKI_1 RGCY 4 cut(s) 24, 134, 227, 377
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 135, 278
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 187
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 114, 168, 319
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 2 cut(s) 224, 314
GluI GCNGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 170
HinfI GANTC 2 cut(s) 58, 139
Hpy188I TCNGA 4 cut(s) 31, 177, 190, 346
Hpy188III TCNNGA 2 cut(s) 156, 395
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 5 cut(s) 21, 185, 267, 321, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 2 cut(s) 135, 278
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 170
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 1 cut(s) 215
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 4 cut(s) 194, 195, 273, 340
MaeI CTAG 2 cut(s) 224, 314
MaeII ACGT 1 cut(s) 33
MboII GAAGA 2 cut(s) 254, 368
MluCI AATT 1 cut(s) 100
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 4 cut(s) 273, 319, 352, 394
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 2 cut(s) 371, 406
MwoI GCNNNNNNNGC 1 cut(s) 327
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 170
PciI ACATGT 1 cut(s) 166
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PscI ACATGT 1 cut(s) 166
PsiI TTATAA 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 92
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 371, 406
SatI GCNGC 1 cut(s) 22
SchI GAGTC 1 cut(s) 67
SetI ASST 2 cut(s) 26, 36
SfaNI GCATC 4 cut(s) 194, 195, 273, 340
Sse9I AATT 1 cut(s) 100
SsiI CCGC 1 cut(s) 88
SspI AATATT 2 cut(s) 72, 259
SspMI CTAG 2 cut(s) 224, 314
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 155
TaqII GACCGA 1 cut(s) 51
TasI AATT 1 cut(s) 100
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 371, 406
Tru9I TTAA 2 cut(s) 371, 406
TscAI CASTG 2 cut(s) 328, 385
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 328, 385
XceI RCATGY 1 cut(s) 170
XspI CTAG 2 cut(s) 224, 314
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.