AT5G56430

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Reverse (-)
22853323 .. 22854801
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56430.1

Sequence Viewer

Length: 1083 bp
ATGAGAAATATCAGTGATTTGCCTAACGATTTGCTGGTGAAGATTTTGTCATTAATTCCGATAAAAGTTGCTGCGTCTACAAGTCTTTTGTCCAAACGATGGGGTTCTGTTTGGAAATTGATTCCGACGCTTGACTATGACGGTACATATAGTGCTGCAGCTTTAGAGTTTTTCGGAAAGTTTCACACCCTTGTGGCTTTACGCTTTATGAAATTGACCATTGAGGATGTTCATTCGACAACTTGTTTCCGGTCCGTCAAGAATTTATCTCTTCTAGATGTAAAGTTCTCAAGCGATAAAACCGTTGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGCACCGATGGGGCGCTGACAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTTAAACATCCGCTACACAGTAGGGGGTTATCACAATCCAAAAACTGATCATGGATTTGTGATCAATGCTCCTTCTTTAAAGCATTTAGATATTGTTGATCATTTTAGTGGGTTTTGCTCATTAGTGAATATGCCCGAGCAATTGGATGCAGAAATCCACCTTAGACATATTGATTCTGAGAAGCTTCTGGAAAGTCTTACCTCGTCTAAAAAACTTTCCTTGTGTTTAAAACCACAAACGGGTTCATATCCGGGAGGAGACTTTGACCAGCTCGTGTGTCTAGAGCTATGTGTTATGTGCTCCTTAGATTGGTTGAATCTTATCCTCAGACGTTCACCTAAACTCCGATCTCTCAAACTCTACCAATCAAGAGAGAGAAACTGGAGCTGCAGGAATTCCAAACATGTCCGTACTAAATGGGAGCAACCCAATTCTGTTCCTGAATGCTTACTTGTGAGTCTCGAAACTGTTAAGTGGATTTTGTACAAAGGGACACAAGAAGAGAAGGATGTGGTGAAGTATTTGTTAAAGAATGGAAACTTCATAAAGACTATGAGTATTCGATTCTCATCAGTAGTCACGTTGGAAGAGAGAATCCACATACCAATGGAGTTTGAGTTCATGGGAAGGATTAATTCCAGCAGATGTCAGCTTTCATTCTCAAAGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

360

Amino Acids

41.18

Weight (kDa)

9.02

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 39 1.6e-06 F-box domain
LRR_At5g56370 PF24758 63 - 170 1.2e-06 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 279 - 324 9.2e-18 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 1 cut(s) 77
AciI CCGC 1 cut(s) 421
AcsI RAATTY 2 cut(s) 262, 805
AfaI GTAC 3 cut(s) 145, 823, 896
AfiI CCNNNNNNNGG 4 cut(s) 99, 309, 650, 720
AflIII ACRYGT 1 cut(s) 814
AgsI TTSAA 2 cut(s) 338, 727
AleI CACNNNNGTG 1 cut(s) 191
AloI GAACNNNNNNTCC 2 cut(s) 1013, 1045
AluBI AGCT 8 cut(s) 161, 411, 595, 682, 697, 798, 1063, 1078
AluI AGCT 8 cut(s) 161, 411, 595, 682, 697, 798, 1063, 1078
Alw21I GWGCWC 2 cut(s) 354, 713
Alw26I GTCTC 2 cut(s) 663, 875
Alw44I GTGCAC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 545
ApaLI GTGCAC 1 cut(s) 350
ApeKI GCWGC 4 cut(s) 71, 155, 158, 798
ApoI RAATTY 2 cut(s) 262, 805
AseI ATTAAT 2 cut(s) 53, 1044
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 663
AsuHPI GGTGA 3 cut(s) 49, 738, 937
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 354
BauI CACGAG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 2 cut(s) 354, 713
BbvI GCAGC 4 cut(s) 58, 142, 170, 785
BccI CCATC 3 cut(s) 93, 351, 406
BclI TGATCA 3 cut(s) 457, 471, 508
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 2 cut(s) 663, 875
BfaI CTAG 2 cut(s) 275, 692
BfmI CTRYAG 2 cut(s) 156, 799
BfoI RGCGCY 1 cut(s) 366
BisI GCNGC 4 cut(s) 72, 156, 159, 799
BlsI GCNGC 4 cut(s) 73, 157, 160, 800
Bme1390I CCNGG 1 cut(s) 663
Bme18I GGWCC 1 cut(s) 252
BmeT110I CYCGRG 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 663
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 814
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 979
BsaWI WCCGGW 1 cut(s) 249
BsaXI ACNNNNNCTCC 4 cut(s) 738, 768, 1013, 1043
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 309, 650, 720
Bse1I ACTGG 1 cut(s) 797
Bse8I GATNNNNATC 1 cut(s) 979
BseGI GGATG 4 cut(s) 232, 417, 562, 925
BseJI GATNNNNATC 1 cut(s) 979
BseLI CCNNNNNNNGG 4 cut(s) 99, 309, 650, 720
BseMII CTCAG 2 cut(s) 579, 751
BseNI ACTGG 1 cut(s) 797
BseRI GAGGAG 1 cut(s) 681
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 4 cut(s) 58, 142, 170, 785
BsiHKAI GWGCWC 2 cut(s) 354, 713
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 2 cut(s) 250, 662
BslFI GGGAC 1 cut(s) 916
BslI CCNNNNNNNGG 4 cut(s) 99, 309, 650, 720
BsmAI GTCTC 2 cut(s) 663, 875
BsmFI GGGAC 1 cut(s) 916
BsmI GAATGC 1 cut(s) 860
BsoBI CYCGRG 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 354, 713
Bsp1407I TGTACA 1 cut(s) 894
Bsp143I GATC 4 cut(s) 457, 471, 508, 758
BspACI CCGC 1 cut(s) 421
BspCNI CTCAG 2 cut(s) 580, 750
BspMAI CTGCAG 2 cut(s) 160, 803
BsrGI TGTACA 1 cut(s) 894
BsrI ACTGG 1 cut(s) 797
BssMI GATC 4 cut(s) 457, 471, 508, 758
BssSI CACGAG 1 cut(s) 683
Bst2BI CACGAG 1 cut(s) 683
Bst4CI ACNGT 4 cut(s) 143, 304, 430, 880
Bst6I CTCTTC 3 cut(s) 276, 906, 993
BstAUI TGTACA 1 cut(s) 894
BstDEI CTNAG 4 cut(s) 572, 588, 715, 737
BstF5I GGATG 4 cut(s) 232, 417, 562, 925
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 4 cut(s) 460, 474, 511, 761
BstMAI GTCTC 2 cut(s) 663, 875
BstMBI GATC 4 cut(s) 457, 471, 508, 758
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstNSI RCATGY 1 cut(s) 818
BstSCI CCNGG 1 cut(s) 661
BstSFI CTRYAG 2 cut(s) 156, 799
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 4 cut(s) 58, 142, 170, 785
BstV2I GAAGAC 1 cut(s) 383
BtsCI GGATG 4 cut(s) 232, 417, 562, 925
BtsIMutI CAGTG 1 cut(s) 19
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 252
CpoI CGGWCCG 1 cut(s) 252
CseI GACGC 2 cut(s) 63, 136
Csp6I GTAC 3 cut(s) 144, 822, 895
CspI CGGWCCG 1 cut(s) 252
CviAII CATG 3 cut(s) 461, 815, 1033
CviQI GTAC 3 cut(s) 144, 822, 895
DdeI CTNAG 4 cut(s) 572, 588, 715, 737
DpnI GATC 4 cut(s) 459, 473, 510, 760
DpnII GATC 4 cut(s) 457, 471, 508, 758
DraI TTTAAA 2 cut(s) 489, 639
Eam1104I CTCTTC 3 cut(s) 276, 906, 993
EarI CTCTTC 3 cut(s) 276, 906, 993
Eco47I GGWCC 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 805
FaeI CATG 3 cut(s) 464, 818, 1036
FaqI GGGAC 1 cut(s) 916
FatI CATG 3 cut(s) 460, 814, 1032
FbaI TGATCA 3 cut(s) 457, 471, 508
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 4 cut(s) 72, 156, 159, 799
FokI GGATG 4 cut(s) 239, 404, 569, 932
Fsp4HI GCNGC 4 cut(s) 72, 156, 159, 799
FspBI CTAG 2 cut(s) 275, 692
GlaI GCGC 1 cut(s) 364
GluI GCNGC 4 cut(s) 72, 156, 159, 799
GsuI CTGGAG 1 cut(s) 814
HaeII RGCGCY 1 cut(s) 366
HapII CCGG 2 cut(s) 250, 662
HgaI GACGC 2 cut(s) 63, 136
HhaI GCGC 1 cut(s) 365
Hin1II CATG 3 cut(s) 464, 818, 1036
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 6 cut(s) 121, 584, 727, 868, 975, 1005
HpaII CCGG 2 cut(s) 250, 662
HphI GGTGA 3 cut(s) 49, 738, 937
Hpy166II GTNNAC 3 cut(s) 78, 352, 746
Hpy188I TCNGA 6 cut(s) 60, 126, 176, 589, 740, 758
Hpy188III TCNNGA 8 cut(s) 259, 275, 335, 599, 692, 780, 851, 872
Hpy8I GTNNAC 3 cut(s) 78, 352, 746
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 3 cut(s) 492, 910, 1032
HpyCH4III ACNGT 4 cut(s) 143, 304, 430, 880
HpyCH4IV ACGT 2 cut(s) 742, 992
HpyCH4V TGCA 5 cut(s) 158, 352, 406, 560, 801
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 4 cut(s) 572, 588, 715, 737
HpySE526I ACGT 2 cut(s) 742, 992
Hsp92II CATG 3 cut(s) 464, 818, 1036
HspAI GCGC 1 cut(s) 363
Ksp22I TGATCA 3 cut(s) 457, 471, 508
Kzo9I GATC 4 cut(s) 457, 471, 508, 758
LmnI GCTCC 4 cut(s) 484, 716, 795, 832
LpnPI CCDG 9 cut(s) 20, 263, 584, 675, 692, 778, 787, 864, 1063
Lsp1109I GCAGC 4 cut(s) 58, 142, 170, 785
LweI GCATC 1 cut(s) 547
MaeI CTAG 2 cut(s) 275, 692
MaeII ACGT 2 cut(s) 742, 992
MaeIII GTNAC 1 cut(s) 988
MalI GATC 4 cut(s) 459, 473, 510, 760
MboI GATC 4 cut(s) 457, 471, 508, 758
MboII GAAGA 5 cut(s) 52, 263, 388, 923, 1010
MfeI CAATTG 1 cut(s) 551
MhlI GDGCHC 2 cut(s) 354, 713
MluCI AATT 9 cut(s) 54, 116, 212, 262, 387, 551, 805, 841, 1045
MlyI GAGTC 1 cut(s) 877
MmeI TCCRAC 2 cut(s) 149, 975
MnlI CCTC 5 cut(s) 217, 303, 622, 659, 746
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 7 cut(s) 53, 413, 488, 638, 882, 938, 1044
MslI CAYNNNNRTG 3 cut(s) 191, 516, 1016
MspI CCGG 2 cut(s) 250, 662
MspR9I CCNGG 1 cut(s) 663
MunI CAATTG 1 cut(s) 551
Mva1269I GAATGC 1 cut(s) 860
MwoI GCNNNNNNNGC 1 cut(s) 403
NciI CCSGG 1 cut(s) 663
NdeII GATC 4 cut(s) 457, 471, 508, 758
NlaIII CATG 3 cut(s) 464, 818, 1036
NmuCI GTSAC 1 cut(s) 988
NspI RCATGY 1 cut(s) 818
OliI CACNNNNGTG 1 cut(s) 191
PciI ACATGT 1 cut(s) 814
PctI GAATGC 1 cut(s) 860
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 5 cut(s) 121, 584, 727, 975, 1005
PflMI CCANNNNNTGG 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 4 cut(s) 73, 157, 160, 800
PleI GAGTC 1 cut(s) 876
PpsI GAGTC 1 cut(s) 876
PscI ACATGT 1 cut(s) 814
PshBI ATTAAT 2 cut(s) 53, 1044
PspPI GGNCC 1 cut(s) 252
PstI CTGCAG 2 cut(s) 160, 803
RsaI GTAC 3 cut(s) 145, 823, 896
RsaNI GTAC 3 cut(s) 144, 822, 895
RseI CAYNNNNRTG 3 cut(s) 191, 516, 1016
Rsr2I CGGWCCG 1 cut(s) 252
RsrII CGGWCCG 1 cut(s) 252
SaqAI TTAA 7 cut(s) 53, 413, 488, 638, 882, 938, 1044
SatI GCNGC 4 cut(s) 72, 156, 159, 799
Sau3AI GATC 4 cut(s) 457, 471, 508, 758
Sau96I GGNCC 1 cut(s) 252
SchI GAGTC 1 cut(s) 877
ScrFI CCNGG 1 cut(s) 663
SduI GDGCHC 2 cut(s) 354, 713
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 2 cut(s) 156, 799
SinI GGWCC 1 cut(s) 252
SmiMI CAYNNNNRTG 3 cut(s) 191, 516, 1016
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 9 cut(s) 54, 116, 212, 262, 387, 551, 805, 841, 1045
SsiI CCGC 1 cut(s) 421
SspMI CTAG 2 cut(s) 275, 692
StyD4I CCNGG 1 cut(s) 661
TaaI ACNGT 4 cut(s) 143, 304, 430, 880
TaiI ACGT 2 cut(s) 745, 995
TaqI TCGA 3 cut(s) 236, 873, 973
TasI AATT 9 cut(s) 54, 116, 212, 262, 387, 551, 805, 841, 1045
TatI WGTACW 1 cut(s) 894
TfiI GAWTC 5 cut(s) 121, 584, 727, 975, 1005
Tru1I TTAA 7 cut(s) 53, 413, 488, 638, 882, 938, 1044
Tru9I TTAA 7 cut(s) 53, 413, 488, 638, 882, 938, 1044
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 988
TseI GCWGC 4 cut(s) 71, 155, 158, 798
Tsp45I GTSAC 1 cut(s) 988
TspDTI ATGAA 6 cut(s) 221, 224, 645, 943, 1021, 1056
TspGWI ACGGA 2 cut(s) 244, 809
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 99
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 252
VspI ATTAAT 2 cut(s) 53, 1044
XapI RAATTY 2 cut(s) 262, 805
XbaI TCTAGA 2 cut(s) 274, 691
XceI RCATGY 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 2 cut(s) 275, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.