Rmu_sc0000738.1_g000011

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000738.1
OG0000140
Physical Location & Seq
Reverse (-)
49306 .. 50942
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000738.1_g000011.1.cds

Sequence Viewer

Length: 1380 bp
atggatgtaagttctcagatggaaagacccaaaaagcagaagttgggtggaggagaagagatggttggacagagaaagggtagtttaagtgatttacctgatgtggttattgcaaaaatcatctcttcacttccaactaaagaggctatcagaacaagcatactgtctaaaagatgggaatacctatggacatcaattcccaatcttgaattttatccagggaatgctaagagatctctcttggtgaatgttgtagatagagcacttcttttacgtggcccttctgatataaaacggttccgtcttaggtttccagtgctcggtgatgcatctcgtgttcatgcctggatctctgccatagtacggcgcaatgttgaagacttatctatagagctggatagccacaaggaaccattttcattgcctcattctctacttacttctgccacattgaaagtgctgaacctgtatctcccgtgtagtttcaaagttccttctactatttgtttctcaagtctaagggaattgtctctttgctccgtggtgttttctgatgactactcaacccagcagctgttttctggttgcccagtccttgaaaaattatctttttcagagtgtaattgggagaatatcaagtttgtgagtatttgtgctcctaaacttctgagtttgagcatcgatgaaagcgagttgccaatttccagaggctcaaatgtgtgtcagattatggtgtttggagctagtctggcatatttttattactcaggtcagttgctaaatgactattgtttgtgtaactcatcagtacatgaggctcatattagtattgatgatacaaagggctccagacttgatagttacctgttgcataagcttcttagagggctctctactgtgaagagcctaactatatttcatcagaactttgaggtggctctaactggtgcatcagaacttcttgcccagatgcccatgttcaatgatctaaccaccttgatattcgacgggagtgtgatagaacttgatggtatggtactattgaggatactccaaaactgtccttgtcttagggatctgtcatttcatgagggggttaggctgtgctcagatgatgcaaaagatgatgggatgttggatattccactgcctccatgtttctcgaccagtcttaaagagattgcagtcagtgaattttgtggaaaccagaatgagcttcgtgcattaaggattttgctaaagaatgcaattgtcttggagaatatgtttgtaagctaccgcggtaccctagaaggaaatacagagaagaaaagggatcttaacaaacagatatcagatctcccaaaagggtcacaaagctgtgaaattgattgtgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

459

Amino Acids

51.3

Weight (kDa)

5.85

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1283
AccB1I GGYRCC 1 cut(s) 1283
AccII CGCG 1 cut(s) 1281
AciI CCGC 2 cut(s) 1279, 1281
AclWI GGATC 3 cut(s) 356, 1083, 1323
AcsI RAATTY 2 cut(s) 209, 1193
AfaI GTAC 4 cut(s) 363, 810, 1038, 1285
AfiI CCNNNNNNNGG 2 cut(s) 320, 363
AgsI TTSAA 6 cut(s) 209, 377, 454, 487, 599, 982
AjnI CCWGG 2 cut(s) 217, 344
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 7 cut(s) 394, 574, 743, 877, 1216, 1275, 1359
AluI AGCT 7 cut(s) 394, 574, 743, 877, 1216, 1275, 1359
Alw21I GWGCWC 4 cut(s) 265, 321, 658, 1109
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 3 cut(s) 356, 1083, 1323
AlwNI CAGNNNCTG 1 cut(s) 574
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 571
ApoI RAATTY 2 cut(s) 209, 1193
Asp718I GGTACC 1 cut(s) 1283
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 256, 335
BaeI ACNNNNGTAYC 2 cut(s) 1267, 1300
BanI GGYRCC 1 cut(s) 1283
BanII GRGCYC 2 cut(s) 848, 891
BauI CACGAG 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 4 cut(s) 265, 321, 658, 1109
BbvI GCAGC 1 cut(s) 583
BccI CCATC 5 cut(s) 13, 55, 168, 1022, 1121
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 2 cut(s) 219, 346
BciVI GTATCC 1 cut(s) 1041
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 2 cut(s) 744, 1289
BfmI CTRYAG 1 cut(s) 387
BfuI GTATCC 1 cut(s) 1041
BglII AGATCT 2 cut(s) 233, 1336
BisI GCNGC 1 cut(s) 572
BlsI GCNGC 1 cut(s) 573
Bme1390I CCNGG 2 cut(s) 219, 346
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 4 cut(s) 299, 411, 847, 1285
BmrFI CCNGG 2 cut(s) 219, 346
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 6 cut(s) 316, 338, 687, 959, 960, 1105
BmuI ACTGGG 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 832
BpuEI CTTGAG 1 cut(s) 496
Bsa29I ATCGAT 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 218, 540, 1279
BsaXI ACNNNNNCTCC 2 cut(s) 1250, 1280
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 363
Bse1I ACTGG 4 cut(s) 314, 590, 949, 1167
Bse3DI GCAATG 2 cut(s) 376, 419
BseBI CCWGG 2 cut(s) 219, 346
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 3 cut(s) 218, 540, 1279
BseGI GGATG 2 cut(s) 10, 1137
BseLI CCNNNNNNNGG 2 cut(s) 320, 363
BseMI GCAATG 2 cut(s) 376, 419
BseMII CTCAG 4 cut(s) 29, 659, 780, 1122
BseNI ACTGG 4 cut(s) 314, 590, 949, 1167
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 583
BseYI CCCAGC 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 1281
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 1283
BshVI ATCGAT 1 cut(s) 681
BsiHKAI GWGCWC 4 cut(s) 265, 321, 658, 1109
BslI CCNNNNNNNGG 2 cut(s) 320, 363
BsmAI GTCTC 1 cut(s) 534
BsmI GAATGC 2 cut(s) 229, 1249
BsnI GGCC 1 cut(s) 279
Bsp1286I GDGCHC 6 cut(s) 265, 321, 658, 848, 891, 1109
Bsp143I GATC 6 cut(s) 233, 348, 985, 1075, 1315, 1336
BspACI CCGC 2 cut(s) 1279, 1281
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 4 cut(s) 28, 660, 779, 1121
BspDI ATCGAT 1 cut(s) 681
BspFNI CGCG 1 cut(s) 1281
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 4 cut(s) 299, 411, 847, 1285
BspPI GGATC 3 cut(s) 356, 1083, 1323
BspQI GCTCTTC 1 cut(s) 896
BspT107I GGYRCC 1 cut(s) 1283
BsrDI GCAATG 2 cut(s) 376, 419
BsrI ACTGG 4 cut(s) 314, 590, 949, 1167
BssECI CCNNGG 3 cut(s) 218, 540, 1279
BssMI GATC 6 cut(s) 233, 348, 985, 1075, 1315, 1336
BssSI CACGAG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 219, 346
Bst4CI ACNGT 4 cut(s) 165, 297, 898, 1061
Bst6I CTCTTC 3 cut(s) 51, 130, 896
BstBAI YACGTR 1 cut(s) 275
BstDEI CTNAG 9 cut(s) 15, 228, 305, 518, 668, 766, 881, 1070, 1108
BstDSI CCRYGG 2 cut(s) 540, 1279
BstF5I GGATG 2 cut(s) 10, 1137
BstFNI CGCG 1 cut(s) 1281
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 6 cut(s) 236, 351, 988, 1078, 1318, 1339
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 6 cut(s) 233, 348, 985, 1075, 1315, 1336
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstNI CCWGG 2 cut(s) 219, 346
BstSCI CCNGG 2 cut(s) 217, 344
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 1 cut(s) 1281
BstV1I GCAGC 1 cut(s) 583
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 5 cut(s) 233, 348, 1075, 1315, 1336
BstYI RGATCY 5 cut(s) 233, 348, 1075, 1315, 1336
Bsu15I ATCGAT 1 cut(s) 681
BsuI GTATCC 1 cut(s) 1041
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 681
BtgI CCRYGG 2 cut(s) 540, 1279
BtsCI GGATG 2 cut(s) 10, 1137
BtsI GCAGTG 1 cut(s) 1145
BtsIMutI CAGTG 3 cut(s) 321, 1145, 1195
CaiI CAGNNNCTG 1 cut(s) 574
CciI TCATGA 1 cut(s) 1087
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 278
Cfr42I CCGCGG 1 cut(s) 1282
ClaI ATCGAT 1 cut(s) 681
Csp6I GTAC 4 cut(s) 362, 809, 1037, 1284
CviAII CATG 5 cut(s) 341, 812, 976, 1088, 1155
CviQI GTAC 4 cut(s) 362, 809, 1037, 1284
DdeI CTNAG 9 cut(s) 15, 228, 305, 518, 668, 766, 881, 1070, 1108
DpnI GATC 6 cut(s) 235, 350, 987, 1077, 1317, 1338
DpnII GATC 6 cut(s) 233, 348, 985, 1075, 1315, 1336
Eam1104I CTCTTC 3 cut(s) 51, 130, 896
EarI CTCTTC 3 cut(s) 51, 130, 896
Eco24I GRGCYC 2 cut(s) 848, 891
Eco32I GATATC 1 cut(s) 1332
EcoRII CCWGG 2 cut(s) 217, 344
EcoRV GATATC 1 cut(s) 1332
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 2 cut(s) 848, 891
FaeI CATG 5 cut(s) 344, 815, 979, 1091, 1158
FatI CATG 5 cut(s) 340, 811, 975, 1087, 1154
Fnu4HI GCNGC 1 cut(s) 572
FokI GGATG 2 cut(s) 17, 1144
FriOI GRGCYC 2 cut(s) 848, 891
Fsp4HI GCNGC 1 cut(s) 572
FspBI CTAG 2 cut(s) 744, 1289
GlaI GCGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 572
GsaI CCCAGC 1 cut(s) 571
GsuI CTGGAG 1 cut(s) 832
HaeIII GGCC 1 cut(s) 279
HhaI GCGC 1 cut(s) 369
Hin1II CATG 5 cut(s) 344, 815, 979, 1091, 1158
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 875
HphI GGTGA 2 cut(s) 256, 335
Hpy188III TCNNGA 5 cut(s) 206, 705, 849, 1088, 1162
Hpy99I CGWCG 1 cut(s) 1010
HpyAV CCTTC 3 cut(s) 291, 504, 1286
HpyCH4III ACNGT 4 cut(s) 165, 297, 898, 1061
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 8 cut(s) 113, 329, 871, 950, 1118, 1184, 1223, 1247
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 9 cut(s) 15, 228, 305, 518, 668, 766, 881, 1070, 1108
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 5 cut(s) 344, 815, 979, 1091, 1158
HspAI GCGC 1 cut(s) 367
KpnI GGTACC 1 cut(s) 1287
KspI CCGCGG 1 cut(s) 1282
Kzo9I GATC 6 cut(s) 233, 348, 985, 1075, 1315, 1336
LguI GCTCTTC 1 cut(s) 896
LmnI GCTCC 4 cut(s) 542, 661, 740, 851
Lsp1109I GCAGC 1 cut(s) 583
LweI GCATC 6 cut(s) 316, 338, 687, 959, 960, 1105
MaeI CTAG 2 cut(s) 744, 1289
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 3 cut(s) 797, 860, 1350
MalI GATC 6 cut(s) 235, 350, 987, 1077, 1317, 1338
MboI GATC 6 cut(s) 233, 348, 985, 1075, 1315, 1336
MboII GAAGA 5 cut(s) 68, 117, 389, 913, 1318
MfeI CAATTG 1 cut(s) 1248
MflI RGATCY 5 cut(s) 233, 348, 1075, 1315, 1336
MhlI GDGCHC 6 cut(s) 265, 321, 658, 848, 891, 1109
MluCI AATT 9 cut(s) 195, 209, 524, 602, 622, 699, 1193, 1248, 1365
MmeI TCCRAC 3 cut(s) 46, 158, 1116
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 4 cut(s) 86, 1173, 1226, 1320
MspA1I CMGCKG 2 cut(s) 574, 1281
MspR9I CCNGG 2 cut(s) 219, 346
MunI CAATTG 1 cut(s) 1248
Mva1269I GAATGC 2 cut(s) 229, 1249
MvaI CCWGG 2 cut(s) 219, 346
MvnI CGCG 1 cut(s) 1281
MwoI GCNNNNNNNGC 1 cut(s) 749
NdeII GATC 6 cut(s) 233, 348, 985, 1075, 1315, 1336
NlaIII CATG 5 cut(s) 344, 815, 979, 1091, 1158
NlaIV GGNNCC 4 cut(s) 299, 411, 847, 1285
NmuCI GTSAC 1 cut(s) 1350
NsiI ATGCAT 1 cut(s) 331
PagI TCATGA 1 cut(s) 1087
PciSI GCTCTTC 1 cut(s) 896
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PctI GAATGC 2 cut(s) 229, 1249
PkrI GCNGC 1 cut(s) 573
Ppu21I YACGTR 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 217, 344
PspFI CCCAGC 1 cut(s) 567
PspGI CCWGG 2 cut(s) 217, 344
PspN4I GGNNCC 4 cut(s) 299, 411, 847, 1285
PspPI GGNCC 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 574
PsuI RGATCY 5 cut(s) 233, 348, 1075, 1315, 1336
PvuII CAGCTG 1 cut(s) 574
RsaI GTAC 4 cut(s) 363, 810, 1038, 1285
RsaNI GTAC 4 cut(s) 362, 809, 1037, 1284
SacII CCGCGG 1 cut(s) 1282
SapI GCTCTTC 1 cut(s) 896
SaqAI TTAA 4 cut(s) 86, 1173, 1226, 1320
SatI GCNGC 1 cut(s) 572
Sau3AI GATC 6 cut(s) 233, 348, 985, 1075, 1315, 1336
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 219, 346
SduI GDGCHC 6 cut(s) 265, 321, 658, 848, 891, 1109
SfaNI GCATC 6 cut(s) 316, 338, 687, 959, 960, 1105
SfcI CTRYAG 1 cut(s) 387
Sfr303I CCGCGG 1 cut(s) 1282
SgrBI CCGCGG 1 cut(s) 1282
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
Sse9I AATT 9 cut(s) 195, 209, 524, 602, 622, 699, 1193, 1248, 1365
SsiI CCGC 2 cut(s) 1279, 1281
SspMI CTAG 2 cut(s) 744, 1289
StyD4I CCNGG 2 cut(s) 217, 344
TaaI ACNGT 4 cut(s) 165, 297, 898, 1061
TaiI ACGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 681, 1005, 1163
TasI AATT 9 cut(s) 195, 209, 524, 602, 622, 699, 1193, 1248, 1365
TatI WGTACW 1 cut(s) 808
Tru1I TTAA 4 cut(s) 86, 1173, 1226, 1320
Tru9I TTAA 4 cut(s) 86, 1173, 1226, 1320
TscAI CASTG 3 cut(s) 321, 1152, 1195
TseFI GTSAC 1 cut(s) 1350
TseI GCWGC 1 cut(s) 571
Tsp45I GTSAC 1 cut(s) 1350
TspDTI ATGAA 5 cut(s) 329, 408, 699, 908, 1076
TspGWI ACGGA 2 cut(s) 290, 529
TspRI CASTG 3 cut(s) 321, 1152, 1195
XapI RAATTY 2 cut(s) 209, 1193
XspI CTAG 2 cut(s) 744, 1289
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.