AT5G56370

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Reverse (-)
22835931 .. 22837972
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56370.3

Sequence Viewer

Length: 1266 bp
ATGGACAGTATAAGTTTGTTGCCCGATGATTTCCTCTTGCGCATACTGTCATTGCTTCCTACAAAAGACGTGTTGAACACTAGTGTTTTGTCTAAACGATGGCGGTATCTTTGGAAGTTGGTGCCAAAACTTCAGTACAGCCTTATCGATAAGAATGCTGATCATGGGACATTTGTGCGGTTTGTGGACAGATCGTTGCTACTTAGCATGGCTCCGGTTTTAGAGAGTTTACATTTAAAGTTAGGTCGACAATGCAGCGAAGTAGATATCGGGTTTTGGGTTAGAATTGCAGTGGAAAAAGGTTTGTGTGAGCTAGATTTCGATTATGAGCATTATAAGACTGAGCCTTGCAGATTGCCTCAGAGCTTGTTCACATGCGGAACACTCACGGTGCTAAAACTAAAAAACGTATCGCTCAAGGATGTACAATTCCCGGTATGTTTTAAGTTGCTCAAAACGCTGCACCTGGAGTATGTGATTTTCCTAGACAAGGAAACTCCTCAGAAGCTTTTATCAAGCTGCCCTATTCTTGAAGTCTTTGATTTGACTCGAGATGACGACGACGTTGATAATGTTATGAGTTTCTCTGTTATGGTGCCTTCGTTACAAAGATTTATCTATTGTGGAGGATCTGGTGCTGAGCTTGTGATGAATACGCCTTCTTTGAAGTACTTAAAGCTTTCAGGTTGTGGTTACGAGTGTATGATTGGGAATTTGCCTGAGATTGTGGAAGCACATGTTGAGGTTGCATGTTCCACTGATGATATCCTTACATCTCTTGCATCAGTCAAACGCCTCTTGCTATGTTTACCCACAGAGCCTGAGTTACCTACTGGTACCATCTTCCACCAGCTTGAACACTTGGAGTTTTGTTCTTGTTGCACAGAATGGGATATACTTATGTTTATGCTCAAACATTCCCCGAAACTTCGATCTCTCAAGCTTAACGAGACCCACGGCTACACTATTGTTTCTCAAAGTGATCCTATGTTTCATTGGGAGGAACCAAGCTCGGTTCCTGAAACTTTGATGTTTGTTCTTGAGACTTTGGAGTGGAGAAACTACAGAGGGTTGAAGATGGAAAACGAACTCGCAAGTTTTCTCTTGAAACATTCAAGACGTCTGAAGATTGCAACCTTTTCGCCAGCAGACTGCAAACAAGTGAGAATCGAATTACGTACGACAGTTGGAATGAAATATCGTATACTCATGGAATTGGCGCGTTTGCCAAGGGGTTCAGCAGAGTGTGAGCTTGTGTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

421

Amino Acids

48.25

Weight (kDa)

5.93

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 43 4.6e-10 F-box domain
F-box-like PF12937 4 - 37 2.6e-06 F-box-like
LRR_At1g61320_AtMIF1 PF23622 87 - 316 2.5e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 93 - 228 1.9e-15 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 151 - 175 1.7e-08 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AatII GACGTC 1 cut(s) 1123
Acc16I TGCGCA 1 cut(s) 41
Acc65I GGTACC 1 cut(s) 836
AccB1I GGYRCC 3 cut(s) 121, 595, 836
AccI GTMKAC 2 cut(s) 247, 1204
AccII CGCG 1 cut(s) 1222
AciI CCGC 3 cut(s) 103, 178, 378
AclWI GGATC 2 cut(s) 637, 977
AcsI RAATTY 1 cut(s) 712
AcuI CTGAAG 2 cut(s) 116, 1145
AcyI GRCGYC 1 cut(s) 1120
AfaI GTAC 5 cut(s) 137, 426, 671, 838, 1180
AfiI CCNNNNNNNGG 1 cut(s) 490
AflIII ACRYGT 2 cut(s) 69, 736
AgsI TTSAA 7 cut(s) 76, 533, 667, 857, 1075, 1108, 1116
AhlI ACTAGT 1 cut(s) 80
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 465
Alw26I GTCTC 2 cut(s) 944, 1037
AlwI GGATC 2 cut(s) 637, 977
AlwNI CAGNNNCTG 1 cut(s) 821
Ama87I CYCGRG 1 cut(s) 549
ApeKI GCWGC 3 cut(s) 255, 460, 519
ApoI RAATTY 1 cut(s) 712
Asp718I GGTACC 1 cut(s) 836
AspLEI GCGC 2 cut(s) 42, 1222
AsuC2I CCSGG 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 549
BanI GGYRCC 3 cut(s) 121, 595, 836
BbvI GCAGC 3 cut(s) 267, 447, 506
BccI CCATC 3 cut(s) 93, 848, 1072
BceAI ACGGC 1 cut(s) 973
BcgI CGANNNNNNTGC 4 cut(s) 137, 171, 1122, 1156
BciT130I CCWGG 1 cut(s) 467
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 944, 1037
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 3 cut(s) 81, 314, 485
BfmI CTRYAG 1 cut(s) 1063
BisI GCNGC 3 cut(s) 256, 461, 520
BlpI GCTNAGC 1 cut(s) 639
BlsI GCNGC 3 cut(s) 257, 462, 521
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 2 cut(s) 434, 467
BmeT110I CYCGRG 1 cut(s) 549
BmgBI CACGTC 1 cut(s) 70
BmiI GGNNCC 6 cut(s) 123, 213, 597, 838, 1005, 1017
BmrFI CCNGG 2 cut(s) 434, 467
BmsI GCATC 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 488
Bpu1102I GCTNAGC 1 cut(s) 639
BpuEI CTTGAG 3 cut(s) 401, 923, 1061
BpuMI CCSGG 1 cut(s) 434
Bsa29I ATCGAT 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 1178
BsaHI GRCGYC 1 cut(s) 1120
BsaI GGTCTC 1 cut(s) 944
BsaJI CCNNGG 2 cut(s) 955, 1229
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 838
Bse3DI GCAATG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 467
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 955, 1229
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 1 cut(s) 50
BseMII CTCAG 6 cut(s) 333, 374, 515, 630, 711, 813
BseNI ACTGG 1 cut(s) 838
BseRI GAGGAG 1 cut(s) 489
BseXI GCAGC 3 cut(s) 267, 447, 506
BsgI GTGCAG 1 cut(s) 446
Bsh1236I CGCG 1 cut(s) 1222
BshNI GGYRCC 3 cut(s) 121, 595, 836
BshVI ATCGAT 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 2 cut(s) 215, 434
BsiWI CGTACG 1 cut(s) 1178
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 2 cut(s) 944, 1037
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 944
BsoBI CYCGRG 1 cut(s) 549
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 5 cut(s) 160, 191, 629, 932, 982
Bsp1720I GCTNAGC 1 cut(s) 639
BspACI CCGC 3 cut(s) 103, 178, 378
BspCNI CTCAG 6 cut(s) 334, 373, 514, 631, 712, 814
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 1 cut(s) 1222
BspLI GGNNCC 6 cut(s) 123, 213, 597, 838, 1005, 1017
BspPI GGATC 2 cut(s) 637, 977
BspT107I GGYRCC 3 cut(s) 121, 595, 836
BspTNI GGTCTC 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 1 cut(s) 838
BssECI CCNNGG 2 cut(s) 955, 1229
BssMI GATC 5 cut(s) 160, 191, 629, 932, 982
BssNAI GTATAC 1 cut(s) 1205
BssNI GRCGYC 1 cut(s) 1120
BssT1I CCWWGG 1 cut(s) 1229
Bst1107I GTATAC 1 cut(s) 1205
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 4 cut(s) 8, 48, 391, 1186
BstACI GRCGYC 1 cut(s) 1120
BstAUI TGTACA 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 1178
BstC8I GCNNGC 1 cut(s) 1146
BstDEI CTNAG 7 cut(s) 203, 342, 360, 501, 639, 720, 822
BstDSI CCRYGG 1 cut(s) 955
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 1222
BstHHI GCGC 2 cut(s) 42, 1222
BstKTI GATC 5 cut(s) 163, 194, 632, 935, 985
BstMAI GTCTC 2 cut(s) 944, 1037
BstMBI GATC 5 cut(s) 160, 191, 629, 932, 982
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 3 cut(s) 378, 740, 753
BstSCI CCNGG 2 cut(s) 432, 465
BstSFI CTRYAG 1 cut(s) 1063
BstSNI TACGTA 1 cut(s) 1178
BstUI CGCG 1 cut(s) 1222
BstV1I GCAGC 3 cut(s) 267, 447, 506
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BstZ17I GTATAC 1 cut(s) 1205
Bsu15I ATCGAT 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 955
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 756
Cac8I GCNNGC 1 cut(s) 1146
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 2 cut(s) 42, 1222
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 5 cut(s) 136, 425, 670, 837, 1179
CviAII CATG 6 cut(s) 164, 208, 375, 737, 750, 1210
CviQI GTAC 5 cut(s) 136, 425, 670, 837, 1179
DdeI CTNAG 7 cut(s) 203, 342, 360, 501, 639, 720, 822
DpnI GATC 5 cut(s) 162, 193, 631, 934, 984
DpnII GATC 5 cut(s) 160, 191, 629, 932, 982
DraI TTTAAA 1 cut(s) 237
Eco105I TACGTA 1 cut(s) 1178
Eco130I CCWWGG 1 cut(s) 1229
Eco31I GGTCTC 1 cut(s) 944
Eco32I GATATC 2 cut(s) 268, 766
Eco57I CTGAAG 2 cut(s) 116, 1145
Eco88I CYCGRG 1 cut(s) 549
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 465
EcoRV GATATC 2 cut(s) 268, 766
EcoT14I CCWWGG 1 cut(s) 1229
ErhI CCWWGG 1 cut(s) 1229
FaeI CATG 6 cut(s) 167, 211, 378, 740, 753, 1213
FaqI GGGAC 1 cut(s) 181
FatI CATG 6 cut(s) 163, 207, 374, 736, 749, 1209
FbaI TGATCA 1 cut(s) 160
FblI GTMKAC 2 cut(s) 247, 1204
Fnu4HI GCNGC 3 cut(s) 256, 461, 520
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 3 cut(s) 256, 461, 520
FspBI CTAG 3 cut(s) 81, 314, 485
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 2 cut(s) 41, 1221
GluI GCNGC 3 cut(s) 256, 461, 520
GsuI CTGGAG 1 cut(s) 488
HapII CCGG 2 cut(s) 215, 434
HhaI GCGC 2 cut(s) 42, 1222
Hin1I GRCGYC 1 cut(s) 1120
Hin1II CATG 6 cut(s) 167, 211, 378, 740, 753, 1213
Hin6I GCGC 2 cut(s) 40, 1220
HinP1I GCGC 2 cut(s) 40, 1220
HincII GTYRAC 1 cut(s) 248
HindII GTYRAC 1 cut(s) 248
HindIII AAGCTT 3 cut(s) 506, 677, 941
HinfI GANTC 2 cut(s) 547, 1167
HpaII CCGG 2 cut(s) 215, 434
Hpy166II GTNNAC 6 cut(s) 187, 230, 248, 372, 809, 1205
Hpy188I TCNGA 3 cut(s) 363, 504, 1125
Hpy188III TCNNGA 6 cut(s) 530, 551, 1019, 1040, 1105, 1116
Hpy8I GTNNAC 6 cut(s) 187, 230, 248, 372, 809, 1205
Hpy99I CGWCG 2 cut(s) 563, 566
HpyAV CCTTC 2 cut(s) 609, 669
HpyCH4III ACNGT 4 cut(s) 8, 48, 391, 1186
HpyCH4IV ACGT 5 cut(s) 69, 408, 564, 1120, 1177
HpyCH4V TGCA 9 cut(s) 255, 290, 351, 463, 749, 782, 882, 1133, 1155
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 7 cut(s) 203, 342, 360, 501, 639, 720, 822
HpySE526I ACGT 5 cut(s) 69, 408, 564, 1120, 1177
Hsp92I GRCGYC 1 cut(s) 1120
Hsp92II CATG 6 cut(s) 167, 211, 378, 740, 753, 1213
HspAI GCGC 2 cut(s) 40, 1220
KpnI GGTACC 1 cut(s) 840
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 160, 191, 629, 932, 982
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 3 cut(s) 267, 447, 506
LweI GCATC 1 cut(s) 791
MaeI CTAG 3 cut(s) 81, 314, 485
MaeII ACGT 5 cut(s) 69, 408, 564, 1120, 1177
MaeIII GTNAC 3 cut(s) 603, 692, 825
MalI GATC 5 cut(s) 162, 193, 631, 934, 984
MboI GATC 5 cut(s) 160, 191, 629, 932, 982
MboII GAAGA 3 cut(s) 835, 1087, 1138
MflI RGATCY 1 cut(s) 629
MluCI AATT 5 cut(s) 285, 428, 712, 1172, 1214
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 1168
MnlI CCTC 8 cut(s) 44, 369, 510, 620, 736, 806, 994, 1061
MseI TTAA 5 cut(s) 236, 444, 674, 945, 1264
MspI CCGG 2 cut(s) 215, 434
MspR9I CCNGG 2 cut(s) 434, 467
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 1 cut(s) 1222
MwoI GCNNNNNNNGC 1 cut(s) 457
NciI CCSGG 1 cut(s) 434
NdeII GATC 5 cut(s) 160, 191, 629, 932, 982
NlaIII CATG 6 cut(s) 167, 211, 378, 740, 753, 1213
NlaIV GGNNCC 6 cut(s) 123, 213, 597, 838, 1005, 1017
NsbI TGCGCA 1 cut(s) 41
NspI RCATGY 3 cut(s) 378, 740, 753
PaeR7I CTCGAG 1 cut(s) 549
PciI ACATGT 1 cut(s) 736
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 1167
Pfl23II CGTACG 1 cut(s) 1178
PkrI GCNGC 3 cut(s) 257, 462, 521
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Ppu21I YACGTR 1 cut(s) 1178
PscI ACATGT 1 cut(s) 736
PsiI TTATAA 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspLI CGTACG 1 cut(s) 1178
PspN4I GGNNCC 6 cut(s) 123, 213, 597, 838, 1005, 1017
PstNI CAGNNNCTG 1 cut(s) 821
PsuI RGATCY 1 cut(s) 629
RsaI GTAC 5 cut(s) 137, 426, 671, 838, 1180
RsaNI GTAC 5 cut(s) 136, 425, 670, 837, 1179
SalI GTCGAC 1 cut(s) 246
SaqAI TTAA 5 cut(s) 236, 444, 674, 945, 1264
SatI GCNGC 3 cut(s) 256, 461, 520
Sau3AI GATC 5 cut(s) 160, 191, 629, 932, 982
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 2 cut(s) 434, 467
SfaNI GCATC 1 cut(s) 791
SfcI CTRYAG 1 cut(s) 1063
Sfr274I CTCGAG 1 cut(s) 549
SlaI CTCGAG 1 cut(s) 549
SmlI CTYRAG 4 cut(s) 416, 549, 938, 1040
SmoI CTYRAG 4 cut(s) 416, 549, 938, 1040
SnaBI TACGTA 1 cut(s) 1178
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 5 cut(s) 285, 428, 712, 1172, 1214
SsiI CCGC 3 cut(s) 103, 178, 378
SspMI CTAG 3 cut(s) 81, 314, 485
StyD4I CCNGG 2 cut(s) 432, 465
StyI CCWWGG 1 cut(s) 1229
TaaI ACNGT 4 cut(s) 8, 48, 391, 1186
TaiI ACGT 5 cut(s) 72, 411, 567, 1123, 1180
TaqI TCGA 6 cut(s) 147, 247, 321, 550, 931, 1170
TasI AATT 5 cut(s) 285, 428, 712, 1172, 1214
TatI WGTACW 3 cut(s) 135, 424, 669
TfiI GAWTC 1 cut(s) 1167
Tru1I TTAA 5 cut(s) 236, 444, 674, 945, 1264
Tru9I TTAA 5 cut(s) 236, 444, 674, 945, 1264
TscAI CASTG 2 cut(s) 297, 763
TseI GCWGC 3 cut(s) 255, 460, 519
TspDTI ATGAA 3 cut(s) 665, 983, 1208
TspRI CASTG 2 cut(s) 297, 763
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 712
XceI RCATGY 3 cut(s) 378, 740, 753
XhoI CTCGAG 1 cut(s) 549
XmiI GTMKAC 2 cut(s) 247, 1204
XspI CTAG 3 cut(s) 81, 314, 485
ZraI GACGTC 1 cut(s) 1121
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.