AT3G26922

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Forward (+)
9922719 .. 9924725
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26922.4

Sequence Viewer

Length: 921 bp
ATGAAACGATGTTTGAGAAATGGAAATGGTGTGAATGAAGACAGGATCAGTGACTTGCCCGAAGCTCTGCTTCTGCAGATATTGTCTATGCTTCCAGTAAAAGATGTTGTTACCACTAGTGTTTTGTCTAAACCATGGAGGTCTCTCTGGAAGTTGGTACCTACACTCAAGTTTGATTATGAAAACAATCAAAGTGAAGATGAGACATACTCAGAGATTGTTTGCAGGCTTTTGCTTTCCAATAAAGCTCCTTTTCTTGAGAGTTTGCATCTCGGATTCAGGTTTGGCGAATGTCGTTCGGTGGAAGTTGGAATGTGGATTGGAATTGCATACGCACGCCATGTGCGTGATTTGGTACTCCATGTTGAATCTGTGAAAGGGTCTTTCATATTTCCTACAGGCTTGTATAACTGTGAAACACTAGAGAGCTTGACACTGAGGAGTTGGGTACTCGTTGATGTCCCTTCTCCGGCTTGTCTCAAGTCTCTTAGAACTCTGCGTCTTGAGAATGTGGATTACAAATACGATGATTCGGTTTATAACCTTTTATCTGGCTGCCCTAATCTTGAAAATTTGGTTGTGTATCGAGGAAATCTACTGGAAGTGGAGACTTTCACTATTGCAGTGCCATCTTTACAGAGACTAACAATTTATGATGACAATGATGGAGAATACTGTACGGGCTATGTGATAAATGCTCCTTCATTGAAGTACTTGAAGATTGATGGGTTTAAGGCTCTCGAGTCTTGTCTGATTGAGAACGCACCGGAGTTGGTGGAGGCAACTATTATGAATGTCTCTAAGATAATCAATGAGAAGCTTTTGGAAACCCTCACTTCAGTCAAACGTCTTTCCTTGGCTTTATCACCCTTGGAGTTAAAGTTTTCTTGCAATAATTATTCGGGTCACTTGTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

306

Amino Acids

34.62

Weight (kDa)

5.3

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 53 5.4e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 73 - 259 5e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 80 - 216 6.4e-15 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 137 - 162 2.6e-07 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc65I GGTACC 1 cut(s) 157
AccB1I GGYRCC 1 cut(s) 157
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 571
AcuI CTGAAG 1 cut(s) 822
AfaI GTAC 5 cut(s) 159, 357, 450, 679, 713
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 4 cut(s) 368, 569, 709, 718
AhlI ACTAGT 1 cut(s) 116
AluBI AGCT 4 cut(s) 65, 248, 429, 820
AluI AGCT 4 cut(s) 65, 248, 429, 820
Alw26I GTCTC 7 cut(s) 147, 197, 482, 489, 602, 634, 802
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 740
ApeKI GCWGC 1 cut(s) 555
ApoI RAATTY 1 cut(s) 571
Asp718I GGTACC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 858
AvaI CYCGRG 1 cut(s) 740
BanI GGYRCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 542
BccI CCATC 3 cut(s) 637, 659, 719
BcoDI GTCTC 7 cut(s) 147, 197, 482, 489, 602, 634, 802
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 2 cut(s) 117, 422
BfmI CTRYAG 2 cut(s) 74, 396
BisI GCNGC 1 cut(s) 556
BlsI GCNGC 1 cut(s) 557
BmcAI AGTACT 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 740
BmiI GGNNCC 1 cut(s) 159
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpuEI CTTGAG 4 cut(s) 152, 278, 464, 524
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 134, 855, 870
BsaWI WCCGGW 1 cut(s) 766
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 2 cut(s) 95, 603
BseDI CCNNGG 3 cut(s) 134, 855, 870
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 225, 428
BseNI ACTGG 2 cut(s) 95, 603
BseRI GAGGAG 1 cut(s) 454
BseXI GCAGC 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 2 cut(s) 470, 767
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 7 cut(s) 147, 197, 482, 489, 602, 634, 802
BsmFI GGGAC 1 cut(s) 446
Bso31I GGTCTC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 740
Bsp143I GATC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 224, 429
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 78
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 147
BsrI ACTGG 2 cut(s) 95, 603
BssECI CCNNGG 3 cut(s) 134, 855, 870
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 3 cut(s) 134, 855, 870
Bst4CI ACNGT 2 cut(s) 413, 677
BstC8I GCNNGC 2 cut(s) 227, 337
BstDEI CTNAG 4 cut(s) 211, 437, 488, 801
BstDSI CCRYGG 1 cut(s) 134
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 7 cut(s) 147, 197, 482, 489, 602, 634, 802
BstMBI GATC 1 cut(s) 45
BstSFI CTRYAG 2 cut(s) 74, 396
BstV1I GCAGC 1 cut(s) 542
BstV2I GAAGAC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 3 cut(s) 55, 434, 630
Cac8I GCNNGC 2 cut(s) 227, 337
CseI GACGC 1 cut(s) 488
Csp6I GTAC 5 cut(s) 158, 356, 449, 678, 712
CviAII CATG 3 cut(s) 135, 341, 362
CviQI GTAC 5 cut(s) 158, 356, 449, 678, 712
DdeI CTNAG 4 cut(s) 211, 437, 488, 801
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco130I CCWWGG 3 cut(s) 134, 855, 870
Eco31I GGTCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 822
Eco88I CYCGRG 1 cut(s) 740
EcoT14I CCWWGG 3 cut(s) 134, 855, 870
ErhI CCWWGG 3 cut(s) 134, 855, 870
FaeI CATG 3 cut(s) 138, 344, 365
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 1 cut(s) 446
FatI CATG 3 cut(s) 134, 340, 361
Fnu4HI GCNGC 1 cut(s) 556
Fsp4HI GCNGC 1 cut(s) 556
FspBI CTAG 2 cut(s) 117, 422
GluI GCNGC 1 cut(s) 556
HapII CCGG 2 cut(s) 470, 767
HgaI GACGC 1 cut(s) 488
Hin1II CATG 3 cut(s) 138, 344, 365
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 4 cut(s) 276, 368, 530, 743
HpaII CCGG 2 cut(s) 470, 767
HphI GGTGA 1 cut(s) 858
Hpy188I TCNGA 3 cut(s) 214, 275, 753
Hpy188III TCNNGA 5 cut(s) 148, 257, 503, 566, 740
HpyAV CCTTC 2 cut(s) 474, 711
HpyCH4III ACNGT 2 cut(s) 413, 677
HpyCH4IV ACGT 1 cut(s) 847
HpyCH4V TGCA 6 cut(s) 76, 225, 268, 329, 623, 891
HpyF3I CTNAG 4 cut(s) 211, 437, 488, 801
HpySE526I ACGT 1 cut(s) 847
Hsp92II CATG 3 cut(s) 138, 344, 365
KpnI GGTACC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 253, 703
Lsp1109I GCAGC 1 cut(s) 542
LweI GCATC 1 cut(s) 277
MaeI CTAG 2 cut(s) 117, 422
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 3 cut(s) 50, 109, 905
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 50, 209, 730
MluCI AATT 4 cut(s) 324, 571, 648, 895
MlyI GAGTC 1 cut(s) 752
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 5 cut(s) 132, 432, 581, 772, 842
MseI TTAA 2 cut(s) 732, 878
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 2 cut(s) 470, 767
NcoI CCATGG 1 cut(s) 134
NdeII GATC 1 cut(s) 45
NlaIII CATG 3 cut(s) 138, 344, 365
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 50, 905
PaeR7I CTCGAG 1 cut(s) 740
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PfeI GAWTC 3 cut(s) 276, 368, 530
PkrI GCNGC 1 cut(s) 557
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PsiI TTATAA 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 159
PstI CTGCAG 1 cut(s) 78
RsaI GTAC 5 cut(s) 159, 357, 450, 679, 713
RsaNI GTAC 5 cut(s) 158, 356, 449, 678, 712
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 732, 878
SatI GCNGC 1 cut(s) 556
Sau3AI GATC 1 cut(s) 45
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 1 cut(s) 752
SetI ASST 9 cut(s) 67, 143, 163, 250, 284, 431, 546, 822, 850
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 2 cut(s) 74, 396
Sfr274I CTCGAG 1 cut(s) 740
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 5 cut(s) 167, 257, 479, 503, 740
SmoI CTYRAG 5 cut(s) 167, 257, 479, 503, 740
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 4 cut(s) 324, 571, 648, 895
SspMI CTAG 2 cut(s) 117, 422
StyI CCWWGG 3 cut(s) 134, 855, 870
TaaI ACNGT 2 cut(s) 413, 677
TaiI ACGT 1 cut(s) 850
TaqI TCGA 2 cut(s) 586, 741
TasI AATT 4 cut(s) 324, 571, 648, 895
TatI WGTACW 1 cut(s) 711
TfiI GAWTC 3 cut(s) 276, 368, 530
Tru1I TTAA 2 cut(s) 732, 878
Tru9I TTAA 2 cut(s) 732, 878
TscAI CASTG 3 cut(s) 55, 441, 630
TseFI GTSAC 2 cut(s) 50, 905
TseI GCWGC 1 cut(s) 555
Tsp45I GTSAC 2 cut(s) 50, 905
TspDTI ATGAA 6 cut(s) 17, 51, 195, 376, 693, 806
TspRI CASTG 3 cut(s) 55, 441, 630
XapI RAATTY 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 740
XspI CTAG 2 cut(s) 117, 422
ZrmI AGTACT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.