Rh5BG032600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000140
Physical Location & Seq
Reverse (-)
2266552 .. 2267754
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG032600.1

Sequence Viewer

Length: 594 bp
ATGGATCTCTGCTATAGTAAAATGAATGTTGAAGAGCTTTCTATAAGCCTGCAAATCATTGATGAACCAGTTTTATTGCCTGATTCCTTATTTACTTTTGCAACACTGGTGGTCTTAGATCTAGATATGCCCTGTGTTTTCAAGGTTCCTCGTACTATTTGCTTCTCAAGTCTAAAGTGCTTGAGTCTCAAGTCTGTGGTGTTTTCTGATGACTACTTAACCCAGCAGTTGTTTTCTGGTTTCCCAGTCCTGGAAGATCTATCTCTGATAGATTGCAATTGGATGAATATCAAGTTTGTTAGTATTTATACTCCTAAGCTTTTGATCTTGACCATGATCGAAGGAGGTGTGGAAGTTGCGAGAGCTTCAAAATCTTCTTATGGATGTCAGATGATGGGGATTGAGGAGTCCTCAAATGTTGCTAAAGATGGAGTTTTGGAGCCTTTGCCTCCATGCTTCCTCTCACATCTGAAAGAGATTGAAGTCTATGAATTTTATGGAGACGAAGATCACATACATATATGCATTGAAAGTTTTGCTAAAGAATGCAATGGTTTTAGAGAAGATGACCATAACTTGGGGCACGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

197

Amino Acids

22.21

Weight (kDa)

4.45

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 8 - 114 6.5e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 577
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 491
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 250, 577
AgsI TTSAA 5 cut(s) 32, 142, 369, 482, 530
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 3 cut(s) 37, 319, 365
AluI AGCT 3 cut(s) 37, 319, 365
Alw26I GTCTC 2 cut(s) 191, 495
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 585
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BccI CCATC 2 cut(s) 388, 422
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 191, 495
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 13
BglII AGATCT 2 cut(s) 118, 256
Bme1390I CCNGG 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 147, 441
BmrFI CCNGG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 239
BplI GAGNNNNNCTC 2 cut(s) 395, 427
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 3 cut(s) 151, 173, 202
BsaBI GATNNNNATC 1 cut(s) 287
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 577
Bse1I ACTGG 3 cut(s) 68, 111, 245
Bse3DI GCAATG 1 cut(s) 556
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 1 cut(s) 251
BseGI GGATG 2 cut(s) 288, 389
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 250, 577
BseMI GCAATG 1 cut(s) 556
BseNI ACTGG 3 cut(s) 68, 111, 245
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 585
BseYI CCCAGC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 250, 577
BsmAI GTCTC 2 cut(s) 191, 495
BsmBI CGTCTC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 6 cut(s) 4, 118, 256, 324, 336, 508
BspLI GGNNCC 2 cut(s) 147, 441
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 556
BsrI ACTGG 3 cut(s) 68, 111, 245
BssMI GATC 6 cut(s) 4, 118, 256, 324, 336, 508
Bst2UI CCWGG 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 115, 315
BstF5I GGATG 2 cut(s) 288, 389
BstKTI GATC 6 cut(s) 7, 121, 259, 327, 339, 511
BstMAI GTCTC 2 cut(s) 191, 495
BstMBI GATC 6 cut(s) 4, 118, 256, 324, 336, 508
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 585
BstX2I RGATCY 3 cut(s) 4, 118, 256
BstYI RGATCY 3 cut(s) 4, 118, 256
BtsCI GGATG 2 cut(s) 288, 389
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 153
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 2 cut(s) 334, 453
CviJI RGCY 5 cut(s) 37, 48, 319, 365, 442
CviKI_1 RGCY 5 cut(s) 37, 48, 319, 365, 442
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 2 cut(s) 115, 315
DpnI GATC 6 cut(s) 6, 120, 258, 326, 338, 510
DpnII GATC 6 cut(s) 4, 118, 256, 324, 336, 508
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 527
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 2 cut(s) 337, 456
FatI CATG 2 cut(s) 333, 452
FokI GGATG 2 cut(s) 295, 396
FspBI CTAG 1 cut(s) 122
GsaI CCCAGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 337, 456
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 3 cut(s) 83, 184, 407
Hpy188I TCNGA 4 cut(s) 208, 267, 390, 471
Hpy188III TCNNGA 2 cut(s) 122, 328
HpyAV CCTTC 1 cut(s) 335
HpyCH4V TGCA 5 cut(s) 52, 101, 276, 525, 549
HpyF3I CTNAG 2 cut(s) 115, 315
Hsp92II CATG 2 cut(s) 337, 456
Kzo9I GATC 6 cut(s) 4, 118, 256, 324, 336, 508
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 439
MaeI CTAG 1 cut(s) 122
MalI GATC 6 cut(s) 6, 120, 258, 326, 338, 510
MboI GATC 6 cut(s) 4, 118, 256, 324, 336, 508
MboII GAAGA 5 cut(s) 44, 266, 366, 518, 575
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 3 cut(s) 4, 118, 256
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 2 cut(s) 277, 491
MlyI GAGTC 2 cut(s) 193, 416
MnlI CCTC 6 cut(s) 159, 338, 397, 421, 459, 470
Mph1103I ATGCAT 1 cut(s) 527
MseI TTAA 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 1 cut(s) 251
NdeII GATC 6 cut(s) 4, 118, 256, 324, 336, 508
NlaIII CATG 2 cut(s) 337, 456
NlaIV GGNNCC 2 cut(s) 147, 441
NsiI ATGCAT 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 249
PleI GAGTC 2 cut(s) 192, 415
PpsI GAGTC 2 cut(s) 192, 415
Psp6I CCWGG 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 147, 441
PsuI RGATCY 3 cut(s) 4, 118, 256
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 218
Sau3AI GATC 6 cut(s) 4, 118, 256, 324, 336, 508
SchI GAGTC 2 cut(s) 193, 416
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 585
SetI ASST 5 cut(s) 39, 147, 321, 349, 367
SfcI CTRYAG 1 cut(s) 13
SmlI CTYRAG 3 cut(s) 166, 181, 188
SmoI CTYRAG 3 cut(s) 166, 181, 188
Sse9I AATT 2 cut(s) 277, 491
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 249
TaqI TCGA 1 cut(s) 339
TasI AATT 2 cut(s) 277, 491
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 111
TspDTI ATGAA 4 cut(s) 38, 78, 299, 504
TspRI CASTG 1 cut(s) 111
Van91I CCANNNNNTGG 1 cut(s) 577
XapI RAATTY 1 cut(s) 491
XbaI TCTAGA 1 cut(s) 121
XspI CTAG 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.