AT5G11370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Forward (+)
3627849 .. 3629717
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11370.1

Sequence Viewer

Length: 936 bp
ATGGAGAAAAGCAAGAGGATGGAGCTTTTTATTGACAGGAATCTGCCAGCTTGTGTCTCAAGTCTATCTGTTCATCTAATCAACCTAAATGTATCAAATTTTGGGCAAACCAAGCTTGCATACAACGATCATATCTTCGGTCACCTTGTTCACGGATCGAGGATATCCGGTTTCGGACTTGTTTGTCAAGTAGTCTGGTCATTGAAACTGAAAGACGAGATTTTCGTGGACGTTCCTCGTATGGTTTGTCTCCCCTCCTTGAAAACTTTGCACCTTAAAGGTGTGATGTATGTAGATGAAGGATCTCTTCAACGGCTTTTATCCAATTGCTCTCTTCTCGAAGAACTGGTTGTTGAACGATGTAATGGTGCCAATATGAGAAAGTTTGCCGTTATCATCCCTCAGAGTAGTCTCTCGTATTTAATTGTGAATATGCCTAAGTTGGAGGAGGCCGATATCGCTCGTGGATCTCATGATGTCAAGAAGCTTCTCAAATCTATCTCTTCTGTCAAACGTCTTTCGTTATATTTAGAAGTCAACAATAATGAGGATCTATATGGTGATGATATTGTCTTTAACGAGCTTGAGCATCTCAAGTTTCGCATAAGCAGAGCCGTGCCAAGGTCAATGGCAAACGTTGTAGGAGATAGTATGGATACATTGTTTTGTTGGAAGCAAATGATTGATGTCCCTCAATGTTTGTTGTCGAGTCTCCAAACTTTCAAGTGGAGAACTTATTTTCCAACAGAAGAAGAGAAAGGTCTGGCGACATATATCTTGGCAAAATCTTGCCGATTAAAGACTGCGAGAATCTTGATTGTTTCAAAGTTGGATCCACAAAAGGAGCTTGAGATGAAGAATGAGTTATTGTCTTCATGTGGTTCAACCACATGCAACCTCGACCTCGTATTCAAACAATTCAACGATCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

311

Amino Acids

35.34

Weight (kDa)

8.26

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 65 - 144 1.3e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 76 - 152 8.1e-06 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 86 - 110 6.5e-09 Leucine Rich Repeat
FBD PF08387 229 - 271 3e-16 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 368
AclI AACGTT 1 cut(s) 636
AclWI GGATC 6 cut(s) 163, 310, 475, 558, 827, 840
AcsI RAATTY 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 621
AgsI TTSAA 9 cut(s) 205, 262, 311, 356, 724, 825, 885, 913, 922
AloI GAACNNNNNNTCC 2 cut(s) 724, 756
AluBI AGCT 6 cut(s) 25, 50, 115, 487, 583, 847
AluI AGCT 6 cut(s) 25, 50, 115, 487, 583, 847
Alw26I GTCTC 4 cut(s) 61, 254, 416, 716
AlwI GGATC 6 cut(s) 163, 310, 475, 558, 827, 840
AoxI GGCC 1 cut(s) 450
ApoI RAATTY 1 cut(s) 97
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AsuHPI GGTGA 2 cut(s) 134, 572
BamHI GGATCC 1 cut(s) 832
BanI GGYRCC 1 cut(s) 368
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 864
BccI CCATC 1 cut(s) 13
BceAI ACGGC 3 cut(s) 329, 374, 599
BciVI GTATCC 1 cut(s) 649
BcoDI GTCTC 4 cut(s) 61, 254, 416, 716
BfuI GTATCC 1 cut(s) 649
BmiI GGNNCC 2 cut(s) 370, 834
BmsI GCATC 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 864
BpuEI CTTGAG 4 cut(s) 43, 578, 605, 869
BsaJI CCNNGG 1 cut(s) 620
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 620
BseGI GGATG 2 cut(s) 24, 396
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 461
BshFI GGCC 1 cut(s) 452
BshNI GGYRCC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 4 cut(s) 61, 254, 416, 716
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 1 cut(s) 452
Bsp143I GATC 7 cut(s) 127, 155, 302, 467, 550, 832, 925
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 370, 834
BspPI GGATC 6 cut(s) 163, 310, 475, 558, 827, 840
BspT107I GGYRCC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 620
BssMI GATC 7 cut(s) 127, 155, 302, 467, 550, 832, 925
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 620
Bst2BI CACGAG 1 cut(s) 462
Bst6I CTCTTC 4 cut(s) 312, 339, 508, 747
BstC8I GCNNGC 2 cut(s) 48, 117
BstDEI CTNAG 2 cut(s) 402, 438
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 2 cut(s) 24, 396
BstKTI GATC 7 cut(s) 130, 158, 305, 470, 553, 835, 928
BstMAI GTCTC 4 cut(s) 61, 254, 416, 716
BstMBI GATC 7 cut(s) 127, 155, 302, 467, 550, 832, 925
BstMWI GCNNNNNNNGC 2 cut(s) 112, 458
BstNSI RCATGY 1 cut(s) 894
BstPI GGTNACC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 4 cut(s) 302, 467, 550, 832
BstYI RGATCY 4 cut(s) 302, 467, 550, 832
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 1 cut(s) 452
BtsCI GGATG 2 cut(s) 24, 396
Cac8I GCNNGC 2 cut(s) 48, 117
CciI TCATGA 1 cut(s) 472
CviAII CATG 3 cut(s) 473, 876, 891
CviJI RGCY 9 cut(s) 25, 50, 115, 316, 452, 487, 583, 614, 847
CviKI_1 RGCY 9 cut(s) 25, 50, 115, 316, 452, 487, 583, 614, 847
DdeI CTNAG 2 cut(s) 402, 438
DpnI GATC 7 cut(s) 129, 157, 304, 469, 552, 834, 927
DpnII GATC 7 cut(s) 127, 155, 302, 467, 550, 832, 925
DrdI GACNNNNNNGTC 1 cut(s) 183
DseDI GACNNNNNNGTC 1 cut(s) 183
Eam1104I CTCTTC 4 cut(s) 312, 339, 508, 747
EarI CTCTTC 4 cut(s) 312, 339, 508, 747
Eco130I CCWWGG 1 cut(s) 620
Eco32I GATATC 2 cut(s) 165, 457
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoRV GATATC 2 cut(s) 165, 457
EcoT14I CCWWGG 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 620
FaeI CATG 3 cut(s) 476, 879, 894
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 674
FatI CATG 3 cut(s) 472, 875, 890
FokI GGATG 2 cut(s) 31, 383
HaeIII GGCC 1 cut(s) 452
HapII CCGG 1 cut(s) 168
Hin1II CATG 3 cut(s) 476, 879, 894
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HindIII AAGCTT 2 cut(s) 113, 485
HinfI GANTC 3 cut(s) 40, 709, 810
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 134, 572
Hpy166II GTNNAC 3 cut(s) 151, 229, 538
Hpy188I TCNGA 2 cut(s) 176, 405
Hpy188III TCNNGA 4 cut(s) 338, 473, 481, 814
Hpy8I GTNNAC 3 cut(s) 151, 229, 538
HpyAV CCTTC 1 cut(s) 293
HpyCH4IV ACGT 3 cut(s) 231, 514, 636
HpyCH4V TGCA 3 cut(s) 119, 271, 894
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 458
HpyF3I CTNAG 2 cut(s) 402, 438
HpySE526I ACGT 3 cut(s) 231, 514, 636
Hsp92II CATG 3 cut(s) 476, 879, 894
Kzo9I GATC 7 cut(s) 127, 155, 302, 467, 550, 832, 925
LmnI GCTCC 2 cut(s) 22, 844
LpnPI CCDG 6 cut(s) 22, 60, 181, 181, 332, 749
LweI GCATC 1 cut(s) 598
MaeII ACGT 3 cut(s) 231, 514, 636
MaeIII GTNAC 1 cut(s) 140
MalI GATC 7 cut(s) 129, 157, 304, 469, 552, 834, 927
MboI GATC 7 cut(s) 127, 155, 302, 467, 550, 832, 925
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 4 cut(s) 302, 467, 550, 832
MluCI AATT 4 cut(s) 97, 325, 423, 917
MlyI GAGTC 1 cut(s) 718
MmeI TCCRAC 4 cut(s) 423, 650, 767, 810
MseI TTAA 4 cut(s) 276, 422, 576, 797
MspI CCGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 112, 458
NdeII GATC 7 cut(s) 127, 155, 302, 467, 550, 832, 925
NlaIII CATG 3 cut(s) 476, 879, 894
NlaIV GGNNCC 2 cut(s) 370, 834
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 894
PagI TCATGA 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 40, 810
PleI GAGTC 1 cut(s) 717
PpsI GAGTC 1 cut(s) 717
Psp1406I AACGTT 1 cut(s) 636
PspEI GGTNACC 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 370, 834
PsuI RGATCY 4 cut(s) 302, 467, 550, 832
SaqAI TTAA 4 cut(s) 276, 422, 576, 797
Sau3AI GATC 7 cut(s) 127, 155, 302, 467, 550, 832, 925
SchI GAGTC 1 cut(s) 718
SfaNI GCATC 1 cut(s) 598
SmlI CTYRAG 4 cut(s) 58, 584, 593, 848
SmoI CTYRAG 4 cut(s) 58, 584, 593, 848
Sse9I AATT 4 cut(s) 97, 325, 423, 917
StyI CCWWGG 1 cut(s) 620
TaiI ACGT 3 cut(s) 234, 517, 639
TaqI TCGA 4 cut(s) 158, 339, 707, 900
TaqII GACCGA 1 cut(s) 128
TasI AATT 4 cut(s) 97, 325, 423, 917
TfiI GAWTC 2 cut(s) 40, 810
Tru1I TTAA 4 cut(s) 276, 422, 576, 797
Tru9I TTAA 4 cut(s) 276, 422, 576, 797
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 4 cut(s) 62, 312, 864, 869
TspGWI ACGGA 1 cut(s) 168
XapI RAATTY 1 cut(s) 97
XceI RCATGY 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.