Rmu_co8209784.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8209784.1
OG0000140
Physical Location & Seq
Forward (+)
1 .. 291
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8209784.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
attggtctgtactcagatgatgcaaaagatgatgggatgttcgagccactgcctccatgtttcttgaatagtcttgaagagattgatgtcttagaattttgtggagatgaggatgagcttcatgcaatgaaggtcttgctaaaatgtgcaatggtcttgaaaaaggtgactattaattggagcagcggtgttcaagtggaaccagaaacgatgaaggacattaacaaacagttattagatctccccagagggtcaggaaactgcaaagttgtttgtttgtgcgctcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

96

Amino Acids

10.68

Weight (kDa)

4.52

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 4 cut(s) 67, 77, 160, 194
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 95
AseI ATTAAT 1 cut(s) 174
AspLEI GCGC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 178
BbvI GCAGC 1 cut(s) 195
BccI CCATC 1 cut(s) 26
BglII AGATCT 1 cut(s) 238
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bse3DI GCAATG 2 cut(s) 132, 156
BseGI GGATG 2 cut(s) 42, 118
BseMI GCAATG 2 cut(s) 132, 156
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 201
BsrDI GCAATG 2 cut(s) 132, 156
BssMI GATC 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 13, 91
BstF5I GGATG 2 cut(s) 42, 118
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtsCI GGATG 2 cut(s) 42, 118
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
CfoI GCGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 57, 122
CviJI RGCY 2 cut(s) 46, 118
CviKI_1 RGCY 2 cut(s) 46, 118
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 13, 91
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
FaeI CATG 2 cut(s) 60, 125
FaiI YATR 2 cut(s) 58, 123
FatI CATG 2 cut(s) 56, 121
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 2 cut(s) 49, 125
Fsp4HI GCNGC 1 cut(s) 184
GlaI GCGC 1 cut(s) 283
GluI GCNGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 284
Hin1II CATG 2 cut(s) 60, 125
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 64, 74, 157, 255
HpyAV CCTTC 2 cut(s) 124, 208
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 23, 125, 149, 264
HpyF3I CTNAG 2 cut(s) 13, 91
Hsp92II CATG 2 cut(s) 60, 125
HspAI GCGC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 3 cut(s) 216, 240, 259
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 89
MflI RGATCY 1 cut(s) 238
MluCI AATT 2 cut(s) 95, 175
MnlI CCTC 3 cut(s) 63, 103, 242
MseI TTAA 2 cut(s) 174, 222
MspA1I CMGCKG 1 cut(s) 186
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 60, 125
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 201
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 174, 222
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 1 cut(s) 238
SetI ASST 3 cut(s) 120, 135, 168
SfaNI GCATC 1 cut(s) 10
Sse9I AATT 2 cut(s) 95, 175
SsiI CCGC 1 cut(s) 186
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 95, 175
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 2 cut(s) 174, 222
Tru9I TTAA 2 cut(s) 174, 222
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 3 cut(s) 110, 143, 227
TspRI CASTG 1 cut(s) 54
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.