AT3G49480

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Reverse (-)
18342544 .. 18344137
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49480.1

Sequence Viewer

Length: 930 bp
ATGCCTAAGAGCTTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCGACAAGATTCTTGTGGATGTTCCTTGTCAAGTCTCTCTCCCATCACTTAGAGAACTTGATCTCTTCTGTGTTGTGTACAAAGACGAAGATTCTCATGTTAAGCTTCTATCAAGTTGTCCCGTTCTCAAGCATCTAAAGGTGACTCGAAATAGACGTGTGGAAGATAATGTGAGAACGTTTAGGGTTGAAGTGCCTTCTTTATTGAGATTAGACTACAAAGCAGGTATGATGTTTCGAGAAGACAGTGATATGTCTGATCCGTTTTTGGTTACAGACACTCCGAATTTATTGTCTCTTCACATCTTTGATACTGTGGGATACTCTCTCTCAGTTTGGTACATGCCCCATCTTGTCACAGTAGTTACTGATGAGCTGTTCCCTAGTGAAAAATTTATGAGGCCTCTCTCTTCGGTCAAGTATCTTGCGCTATCTCCGTTCGATACAATGGTTCCGTGGTGTGACGCAGTTAATAACTACTCTCGACTTGTTGAATGTATGATACATCTATCTGAGTATGACTTGTTGGAATCACTTTTGGTTTTGCTCTCTAAGTGTTCTAAGCTTAAAGTTTTTCTGGTCGACTCCGACATTCCGAGATGGAATCATGACCCAGCTTTATGGAATCAACCGAGTTCTATTCCAAGATGTTTGTCGTCGCATCTCGAGATCTTTGAGTGGGACGGATATGTTGGAAGAGAAGATGAGAAAAAAATCATAAGGTACATTCTAGAAAACTCCAAATATTTAAAAACAGCGGGAATCTCACCGAATTCAACCTTCAGTGGTGAAGAGAAACAGAAGATGGAGGAGTTAGAATCAATGCATAGGACTCCAACGTCTGTGCTTCTGTCCTCTGCTCGAATGTCATTTAGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

309

Amino Acids

35.86

Weight (kDa)

5.94

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 1 - 123 2.6e-11 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 32 - 57 2.7e-07 Leucine Rich Repeat
FBD PF08387 226 - 271 1.5e-19 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 886
Acc36I ACCTGC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 630
AciI CCGC 1 cut(s) 806
AclI AACGTT 1 cut(s) 227
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 3 cut(s) 334, 440, 820
AcuI CTGAAG 1 cut(s) 814
AfaI GTAC 3 cut(s) 128, 389, 773
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 3 cut(s) 239, 542, 825
AjiI CACGTC 1 cut(s) 206
AluBI AGCT 5 cut(s) 12, 154, 424, 613, 665
AluI AGCT 5 cut(s) 12, 154, 424, 613, 665
Alw26I GTCTC 2 cut(s) 88, 348
AlwI GGATC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 713
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 3 cut(s) 334, 440, 820
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 1 cut(s) 478
AsuHPI GGTGA 3 cut(s) 202, 807, 848
AvaI CYCGRG 1 cut(s) 713
BaeI ACNNNNGTAYC 2 cut(s) 483, 516
BbsI GAAGAC 1 cut(s) 297
BccI CCATC 4 cut(s) 100, 405, 642, 847
BciVI GTATCC 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 88, 348
BfaI CTAG 2 cut(s) 432, 779
BfuAI ACCTGC 1 cut(s) 263
BfuI GTATCC 1 cut(s) 362
BglII AGATCT 1 cut(s) 717
BmeT110I CYCGRG 1 cut(s) 713
BmgBI CACGTC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 501
BmsI GCATC 2 cut(s) 190, 718
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpuEI CTTGAG 2 cut(s) 53, 161
BsaJI CCNNGG 1 cut(s) 503
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 393, 552
BseRI GAGGAG 1 cut(s) 872
BseYI CCCAGC 1 cut(s) 661
BshFI GGCC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 713
BslFI GGGAC 2 cut(s) 153, 743
BsmAI GTCTC 2 cut(s) 88, 348
BsmFI GGGAC 2 cut(s) 153, 743
BsnI GGCC 1 cut(s) 451
BsoBI CYCGRG 1 cut(s) 713
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 3 cut(s) 109, 307, 717
BspACI CCGC 1 cut(s) 806
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 2 cut(s) 392, 553
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 3 cut(s) 109, 307, 717
Bst4CI ACNGT 3 cut(s) 296, 364, 409
Bst6I CTCTTC 5 cut(s) 119, 351, 463, 739, 834
BstAUI TGTACA 1 cut(s) 126
BstDEI CTNAG 6 cut(s) 6, 98, 379, 561, 600, 609
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 3 cut(s) 112, 310, 720
BstMAI GTCTC 2 cut(s) 88, 348
BstMBI GATC 3 cut(s) 109, 307, 717
BstNSI RCATGY 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 717
BstXI CCANNNNNNTGG 1 cut(s) 669
BstYI RGATCY 1 cut(s) 717
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 1 cut(s) 451
BtgI CCRYGG 1 cut(s) 503
BtrI CACGTC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 301, 838
BveI ACCTGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 655
CfoI GCGC 1 cut(s) 478
CseI GACGC 1 cut(s) 521
Csp6I GTAC 3 cut(s) 127, 388, 772
CviAII CATG 3 cut(s) 146, 391, 656
CviJI RGCY 6 cut(s) 12, 154, 424, 451, 613, 665
CviKI_1 RGCY 6 cut(s) 12, 154, 424, 451, 613, 665
CviQI GTAC 3 cut(s) 127, 388, 772
DdeI CTNAG 6 cut(s) 6, 98, 379, 561, 600, 609
DpnI GATC 3 cut(s) 111, 309, 719
DpnII GATC 3 cut(s) 109, 307, 717
DraI TTTAAA 1 cut(s) 798
DrdI GACNNNNNNGTC 1 cut(s) 886
DseDI GACNNNNNNGTC 1 cut(s) 886
Eam1104I CTCTTC 5 cut(s) 119, 351, 463, 739, 834
EarI CTCTTC 5 cut(s) 119, 351, 463, 739, 834
Eco147I AGGCCT 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 814
Eco88I CYCGRG 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 820
EcoT22I ATGCAT 1 cut(s) 876
FaeI CATG 3 cut(s) 149, 394, 659
FaqI GGGAC 2 cut(s) 153, 743
FatI CATG 3 cut(s) 145, 390, 655
FauI CCCGC 1 cut(s) 799
FblI GTMKAC 1 cut(s) 630
FokI GGATG 1 cut(s) 80
FspBI CTAG 2 cut(s) 432, 779
GlaI GCGC 1 cut(s) 477
GsaI CCCAGC 1 cut(s) 665
HaeIII GGCC 1 cut(s) 451
HgaI GACGC 1 cut(s) 521
HhaI GCGC 1 cut(s) 478
Hin1II CATG 3 cut(s) 149, 394, 659
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 2 cut(s) 152, 611
HphI GGTGA 3 cut(s) 202, 807, 848
Hpy166II GTNNAC 2 cut(s) 127, 631
Hpy188I TCNGA 6 cut(s) 52, 307, 333, 562, 637, 645
Hpy188III TCNNGA 6 cut(s) 287, 531, 656, 713, 715, 779
Hpy8I GTNNAC 2 cut(s) 127, 631
Hpy99I CGWCG 1 cut(s) 709
HpyAV CCTTC 2 cut(s) 255, 838
HpyCH4III ACNGT 3 cut(s) 296, 364, 409
HpyCH4IV ACGT 3 cut(s) 205, 227, 887
HpyCH4V TGCA 2 cut(s) 24, 874
HpyF3I CTNAG 6 cut(s) 6, 98, 379, 561, 600, 609
HpySE526I ACGT 3 cut(s) 205, 227, 887
Hsp92II CATG 3 cut(s) 149, 394, 659
HspAI GCGC 1 cut(s) 476
Kzo9I GATC 3 cut(s) 109, 307, 717
LpnPI CCDG 3 cut(s) 258, 611, 675
LweI GCATC 2 cut(s) 190, 718
MaeI CTAG 2 cut(s) 432, 779
MaeII ACGT 3 cut(s) 205, 227, 887
MaeIII GTNAC 5 cut(s) 190, 319, 403, 412, 509
MalI GATC 3 cut(s) 111, 309, 719
MboI GATC 3 cut(s) 109, 307, 717
MflI RGATCY 1 cut(s) 717
MluCI AATT 3 cut(s) 334, 440, 820
MlyI GAGTC 4 cut(s) 37, 187, 626, 874
MmeI TCCRAC 5 cut(s) 75, 555, 660, 721, 908
MnlI CCTC 4 cut(s) 441, 462, 850, 913
Mph1103I ATGCAT 1 cut(s) 876
MseI TTAA 4 cut(s) 150, 519, 615, 797
MspA1I CMGCKG 1 cut(s) 806
NdeII GATC 3 cut(s) 109, 307, 717
NlaIII CATG 3 cut(s) 149, 394, 659
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 3 cut(s) 190, 403, 509
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 713
PagI TCATGA 1 cut(s) 655
PceI AGGCCT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PfeI GAWTC 7 cut(s) 58, 140, 578, 652, 673, 810, 866
PleI GAGTC 4 cut(s) 37, 187, 626, 874
PpsI GAGTC 4 cut(s) 37, 187, 626, 874
Psp1406I AACGTT 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 661
PspN4I GGNNCC 1 cut(s) 501
PsuI RGATCY 1 cut(s) 717
RsaI GTAC 3 cut(s) 128, 389, 773
RsaNI GTAC 3 cut(s) 127, 388, 772
SalI GTCGAC 1 cut(s) 629
SaqAI TTAA 4 cut(s) 150, 519, 615, 797
Sau3AI GATC 3 cut(s) 109, 307, 717
SchI GAGTC 4 cut(s) 37, 187, 626, 874
SfaNI GCATC 2 cut(s) 190, 718
Sfr274I CTCGAG 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 713
SmlI CTYRAG 3 cut(s) 32, 176, 713
SmoI CTYRAG 3 cut(s) 32, 176, 713
Sse9I AATT 3 cut(s) 334, 440, 820
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 1 cut(s) 806
SspI AATATT 1 cut(s) 794
SspMI CTAG 2 cut(s) 432, 779
StuI AGGCCT 1 cut(s) 451
TaaI ACNGT 3 cut(s) 296, 364, 409
TaiI ACGT 3 cut(s) 208, 230, 890
TaqI TCGA 7 cut(s) 196, 286, 489, 532, 630, 714, 910
TaqII GACCGA 1 cut(s) 451
TasI AATT 3 cut(s) 334, 440, 820
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 7 cut(s) 58, 140, 578, 652, 673, 810, 866
Tru1I TTAA 4 cut(s) 150, 519, 615, 797
Tru9I TTAA 4 cut(s) 150, 519, 615, 797
TscAI CASTG 2 cut(s) 301, 838
TseFI GTSAC 3 cut(s) 190, 403, 509
Tsp45I GTSAC 3 cut(s) 190, 403, 509
TspGWI ACGGA 4 cut(s) 300, 474, 492, 747
TspRI CASTG 2 cut(s) 301, 838
XapI RAATTY 3 cut(s) 334, 440, 820
XbaI TCTAGA 1 cut(s) 778
XceI RCATGY 1 cut(s) 394
XhoI CTCGAG 1 cut(s) 713
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 2 cut(s) 432, 779
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.