AT5G56325

FBD-associated F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Forward (+)
22812213 .. 22813263
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56325.1

Sequence Viewer

Length: 795 bp
ATGAAGTACCCAGGTGGTGATGAATTTTTCAACACGCTTATATCAAGTTGTCCAATTCTTGAAGACTTGGTTGTGAAACAAATCCTCAACGACAATTTGGCCATTGTGACTGTTAGAGTGCCTTCTCTAAAGAGGTTAGTCTTGAACCAAGAAGTAAAAAACGTTGTTAAAAGCATAGCTAATGGGTTTGTGATAAACACTCCTGCTTTGGAGTGCATGAATATTGTTGATTTTTCGACCGGGTGTAACATTGTTGAGAGTGATATGCCTAACATTGTGAAGGCAAAAGTTGACATTTTTCATCCACGAACTGAGCAACTTTTGGGTTCTACAACTTTAGCCAAGTATCTTCATCTCTGCTTACCAACCTCAAAGAATGTGTCGTATCCTGCTGGTAATATCTTCAACCGTCTCGTACATCTAAGGCTATGCACATGTGAGACTGAGTGGATTAATCTACTTATGCGTTTACTCAGAAATTCCCCTAGTTTACGAGTTCTTGAGATTGAACAGGTCCATTACCTTCGATATTACCAACCACGACCGTGCTGGAGTGAACCAAGCTCGATACCTGAATGTCTTACTCATAATCTTGAAACCTTCAAATGGGAGCATTATTATGGAGCAGAAGAAGAGAAAGAAGTGGCGGCATTCATCTTAAGAAGTTCAATCTGTTTAAAGAAGGCAACTATCATCCTTCATAGGTCTATTGTCCACGACGAGAAACTTGAGATGAACAAGGAATTGTCATTATTGCCAATATGTTCACCAATTTGTCAGCTTGCTTTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

264

Amino Acids

30.13

Weight (kDa)

6.7

Isoelectric Point (pI)

62.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 186 - 231 2.9e-18 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 647
AclI AACGTT 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 2 cut(s) 23, 478
AfaI GTAC 2 cut(s) 8, 417
AfiI CCNNNNNNNGG 1 cut(s) 606
AflII CTTAAG 1 cut(s) 658
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 8 cut(s) 31, 62, 145, 406, 509, 596, 604, 669
AjnI CCWGG 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 544
AluBI AGCT 4 cut(s) 179, 564, 781, 792
AluI AGCT 4 cut(s) 179, 564, 781, 792
Alw26I GTCTC 2 cut(s) 416, 434
AoxI GGCC 1 cut(s) 99
ApoI RAATTY 2 cut(s) 23, 478
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AseI ATTAAT 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 29, 759
AvaII GGWCC 1 cut(s) 514
BalI TGGCCA 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 396
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 416, 434
BfaI CTAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 658
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 12, 241
Bme18I GGWCC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 514
BmrFI CCNGG 2 cut(s) 12, 241
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 571
BpuEI CTTGAG 2 cut(s) 521, 749
BpuMI CCSGG 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 606
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 301, 693
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMII CTCAG 3 cut(s) 303, 435, 487
Bsh1285I CGRYCG 2 cut(s) 240, 545
BshFI GGCC 1 cut(s) 101
BsiEI CGRYCG 2 cut(s) 240, 545
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 2 cut(s) 416, 434
BsmBI CGTCTC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 1 cut(s) 101
BspACI CCGC 1 cut(s) 647
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 3 cut(s) 304, 436, 486
BspTI CTTAAG 1 cut(s) 658
BssECI CCNNGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 3 cut(s) 112, 410, 546
Bst6I CTCTTC 1 cut(s) 627
BstAFI CTTAAG 1 cut(s) 658
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 4 cut(s) 312, 422, 444, 473
BstF5I GGATG 2 cut(s) 301, 693
BstMAI GTCTC 2 cut(s) 416, 434
BstMCI CGRYCG 2 cut(s) 240, 545
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 2 cut(s) 10, 239
BstV2I GAAGAC 1 cut(s) 69
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 2 cut(s) 301, 693
Cac8I GCNNGC 1 cut(s) 783
Cfr13I GGNCC 1 cut(s) 514
Csp6I GTAC 2 cut(s) 7, 416
CviAII CATG 2 cut(s) 217, 435
CviJI RGCY 7 cut(s) 101, 179, 341, 427, 564, 781, 792
CviKI_1 RGCY 7 cut(s) 101, 179, 341, 427, 564, 781, 792
CviQI GTAC 2 cut(s) 7, 416
DdeI CTNAG 4 cut(s) 312, 422, 444, 473
DraI TTTAAA 1 cut(s) 678
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco47I GGWCC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 2 cut(s) 220, 438
FatI CATG 2 cut(s) 216, 434
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 2 cut(s) 288, 680
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 1 cut(s) 486
GluI GCNGC 1 cut(s) 648
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 240
Hin1II CATG 2 cut(s) 220, 438
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HpaII CCGG 1 cut(s) 240
HphI GGTGA 2 cut(s) 29, 759
Hpy166II GTNNAC 6 cut(s) 292, 470, 491, 557, 715, 767
Hpy188I TCNGA 1 cut(s) 476
Hpy188III TCNNGA 4 cut(s) 59, 142, 500, 593
Hpy8I GTNNAC 6 cut(s) 292, 470, 491, 557, 715, 767
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 6 cut(s) 132, 274, 533, 610, 676, 707
HpyCH4III ACNGT 3 cut(s) 112, 410, 546
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 216, 432
HpyF3I CTNAG 4 cut(s) 312, 422, 444, 473
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 220, 438
LmnI GCTCC 2 cut(s) 610, 623
LpnPI CCDG 8 cut(s) 24, 216, 253, 378, 402, 497, 535, 585
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 106, 245
MboII GAAGA 5 cut(s) 74, 341, 394, 641, 644
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 6 cut(s) 23, 54, 94, 478, 743, 771
MluNI TGGCCA 1 cut(s) 101
MnlI CCTC 3 cut(s) 95, 126, 379
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 4 cut(s) 168, 453, 659, 677
MslI CAYNNNNRTG 2 cut(s) 544, 618
Msp20I TGGCCA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 792
MspCI CTTAAG 1 cut(s) 658
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 2 cut(s) 12, 241
Mva1269I GAATGC 1 cut(s) 650
MvaI CCWGG 1 cut(s) 12
NciI CCSGG 1 cut(s) 241
NlaIII CATG 2 cut(s) 220, 438
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 438
OliI CACNNNNGTG 1 cut(s) 544
PciI ACATGT 1 cut(s) 434
PctI GAATGC 1 cut(s) 650
PkrI GCNGC 1 cut(s) 649
PscI ACATGT 1 cut(s) 434
PshBI ATTAAT 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspPI GGNCC 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 792
RsaI GTAC 2 cut(s) 8, 417
RsaNI GTAC 2 cut(s) 7, 416
RseI CAYNNNNRTG 2 cut(s) 544, 618
SaqAI TTAA 4 cut(s) 168, 453, 659, 677
SatI GCNGC 1 cut(s) 648
Sau96I GGNCC 1 cut(s) 514
ScrFI CCNGG 2 cut(s) 12, 241
SinI GGWCC 1 cut(s) 514
SmiMI CAYNNNNRTG 2 cut(s) 544, 618
SmlI CTYRAG 3 cut(s) 500, 658, 728
SmoI CTYRAG 3 cut(s) 500, 658, 728
Sse9I AATT 6 cut(s) 23, 54, 94, 478, 743, 771
SsiI CCGC 1 cut(s) 647
SspI AATATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 10, 239
TaaI ACNGT 3 cut(s) 112, 410, 546
TaiI ACGT 1 cut(s) 165
TaqI TCGA 3 cut(s) 236, 526, 566
TasI AATT 6 cut(s) 23, 54, 94, 478, 743, 771
TauI GCSGC 1 cut(s) 650
Tru1I TTAA 4 cut(s) 168, 453, 659, 677
Tru9I TTAA 4 cut(s) 168, 453, 659, 677
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 8 cut(s) 17, 36, 233, 290, 341, 643, 689, 749
Vha464I CTTAAG 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 514
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 2 cut(s) 23, 478
XceI RCATGY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.