AT3G26920

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Forward (+)
9920429 .. 9922642
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26920.2

Sequence Viewer

Length: 1023 bp
ATGAACTTTGGGTGTGACCCTCGTATAATGGATTTTGAGATATTGATTGGAATTGCGTTTGGACGCCAACTGCGTAAGTTGGTACTCAAAGTTTACTCTGGGGATTGGTTCAAATTTCCTACAAGTTTGTATAACTCCGAAACTCTAGAGACCTTGGAACTCTACCATTGCATTCTTATAGATGTCCCTTTTCCGGTTTGTCTCAAGTCCCTTAGAACTCTAAACCTTCACGAAGTGGAGTTTGTAAACGATGAATCAGTTGTTAACCTTTTAGCTGGTTGTATTAGCCTGGAAAATTTGGTGATTCATCAAACTACAGATCTTAATGTGAAGACTTTTACTATTGCGGTACCATCCTTGCAGAGGTTAACAGTTATTGTTGAGTATTATGAAGAGTTTTCTGTCTTTGTGGTAAATACTCCATCTTTGAAATACTTGAAGATTGAAGGTATTATTGTAGATGATAGGACTTGTATAATTGAGAATACACCTGAGCTGGTGGAGGCAAGTATTATTGATGTGTCTTTTAAAGTCTTTGAGAGCATTCTTGGATCCCTTGCTTCAGTCCAACGTCTTTCCTTGAAGGTTTCACTCGTGGAGATTTTTTCACTTCCTCCTATCAGTAATACCTTTTATCACTTGACATATTTGGAGCTATCCACATATAAACCTAAGTGGTGGAATCTGCTTACGCTCATGCTCGACACTTCTCCTAATTTACAAGTCCTCAAGATCTTCGATTTCATGACATCTCAGGAACAGAGGCCTTGGGAGAAATGGAATGAACCGAAGAATGTTCCTGAATGTTTGTTGCTCCACCTCGAAACATTTGTGTGGACATGTTATGAAGGGAAACTAGAAAATGAGATAGAGCTGGCGAAATATATCCTAAGGAACGCTAGGCGTTTGAAAAAGGCAACTTTCTCCATAATTGAAATTAATCCGGACAAGAGAGTTGAGATGGTTGGTGAGCTCAAAAGCGTGGTCAGGGCTTCAAATTCATGTCAGCTTGTGTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

340

Amino Acids

39.29

Weight (kDa)

5.25

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 18 - 154 5.1e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 24 - 148 9.9e-10 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 70 - 94 2.4e-06 Leucine Rich Repeat
FBD PF08387 223 - 269 1.3e-20 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 349
AccIII TCCGGA 1 cut(s) 943
AciI CCGC 1 cut(s) 347
AclWI GGATC 2 cut(s) 546, 559
AcsI RAATTY 3 cut(s) 113, 295, 997
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 64
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 2 cut(s) 84, 351
AfiI CCNNNNNNNGG 2 cut(s) 193, 363
AflIII ACRYGT 1 cut(s) 839
AgsI TTSAA 8 cut(s) 112, 430, 439, 446, 583, 910, 935, 996
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 6 cut(s) 275, 496, 655, 874, 973, 1009
AluI AGCT 6 cut(s) 275, 496, 655, 874, 973, 1009
Alw21I GWGCWC 1 cut(s) 975
Alw26I GTCTC 2 cut(s) 143, 206
AlwI GGATC 2 cut(s) 546, 559
Aor13HI TCCGGA 1 cut(s) 943
AoxI GGCC 1 cut(s) 764
ApoI RAATTY 3 cut(s) 113, 295, 997
ArsI GACNNNNNNTTYG 2 cut(s) 969, 1001
AseI ATTAAT 1 cut(s) 939
Asp718I GGTACC 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 313, 980
AxyI CCTNAGG 1 cut(s) 890
BamHI GGATCC 1 cut(s) 551
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 975
BauI CACGAG 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 975
BccI CCATC 3 cut(s) 361, 430, 955
BciT130I CCWGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 143, 206
BfaI CTAG 3 cut(s) 146, 857, 900
BfmI CTRYAG 1 cut(s) 315
BglII AGATCT 2 cut(s) 319, 732
Bme1390I CCNGG 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 351, 553
BmrFI CCNGG 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 188, 713
BsaHI GRCGYC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 153, 767
BsaWI WCCGGW 2 cut(s) 193, 943
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 363
Bse21I CCTNAGG 1 cut(s) 890
Bse3DI GCAATG 1 cut(s) 166
BseAI TCCGGA 1 cut(s) 943
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 153, 767
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 193, 363
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 483, 767
BshFI GGCC 1 cut(s) 766
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 975
BsiSI CCGG 2 cut(s) 194, 944
BslFI GGGAC 2 cut(s) 170, 193
BslI CCNNNNNNNGG 2 cut(s) 193, 363
BsmAI GTCTC 2 cut(s) 143, 206
BsmFI GGGAC 2 cut(s) 170, 193
BsmI GAATGC 2 cut(s) 171, 543
BsnI GGCC 1 cut(s) 766
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 975
Bsp13I TCCGGA 1 cut(s) 943
Bsp143I GATC 3 cut(s) 319, 551, 732
BspACI CCGC 1 cut(s) 347
BspANI GGCC 1 cut(s) 766
BspCNI CTCAG 2 cut(s) 484, 766
BspEI TCCGGA 1 cut(s) 943
BspHI TCATGA 1 cut(s) 744
BspLI GGNNCC 2 cut(s) 351, 553
BspPI GGATC 2 cut(s) 546, 559
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 153, 767
BssMI GATC 3 cut(s) 319, 551, 732
BssNI GRCGYC 1 cut(s) 64
BssSI CACGAG 1 cut(s) 593
BssT1I CCWWGG 2 cut(s) 153, 767
Bst2BI CACGAG 1 cut(s) 593
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 876
BstDEI CTNAG 5 cut(s) 212, 492, 672, 753, 890
BstENI CCTNNNNNAGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 3 cut(s) 322, 554, 735
BstMAI GTCTC 2 cut(s) 143, 206
BstMBI GATC 3 cut(s) 319, 551, 732
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 843
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 3 cut(s) 319, 551, 732
BstYI RGATCY 3 cut(s) 319, 551, 732
Bsu36I CCTNAGG 1 cut(s) 890
BsuRI GGCC 1 cut(s) 766
BtsCI GGATG 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 876
CciI TCATGA 1 cut(s) 744
CseI GACGC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 83, 350
CviAII CATG 4 cut(s) 697, 745, 840, 1002
CviJI RGCY 9 cut(s) 275, 288, 496, 655, 766, 874, 973, 992, 1009
CviKI_1 RGCY 9 cut(s) 275, 288, 496, 655, 766, 874, 973, 992, 1009
CviQI GTAC 2 cut(s) 83, 350
DdeI CTNAG 5 cut(s) 212, 492, 672, 753, 890
DpnI GATC 3 cut(s) 321, 553, 734
DpnII GATC 3 cut(s) 319, 551, 732
DraI TTTAAA 1 cut(s) 529
DraIII CACNNNGTG 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 973
Eco130I CCWWGG 2 cut(s) 153, 767
Eco147I AGGCCT 1 cut(s) 766
Eco24I GRGCYC 1 cut(s) 975
Eco31I GGTCTC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 973
Eco57I CTGAAG 1 cut(s) 546
Eco81I CCTNAGG 1 cut(s) 890
EcoICRI GAGCTC 1 cut(s) 973
EcoNI CCTNNNNNAGG 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 2 cut(s) 153, 767
EcoT38I GRGCYC 1 cut(s) 975
ErhI CCWWGG 2 cut(s) 153, 767
FaeI CATG 4 cut(s) 700, 748, 843, 1005
FaqI GGGAC 2 cut(s) 170, 193
FatI CATG 4 cut(s) 696, 744, 839, 1001
FauNDI CATATG 1 cut(s) 1019
FokI GGATG 1 cut(s) 340
FriOI GRGCYC 1 cut(s) 975
FspBI CTAG 3 cut(s) 146, 857, 900
HaeIII GGCC 1 cut(s) 766
HapII CCGG 2 cut(s) 194, 944
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 4 cut(s) 700, 748, 843, 1005
HincII GTYRAC 2 cut(s) 265, 369
HindII GTYRAC 2 cut(s) 265, 369
HinfI GANTC 3 cut(s) 254, 304, 682
HpaI GTTAAC 2 cut(s) 265, 369
HpaII CCGG 2 cut(s) 194, 944
HphI GGTGA 2 cut(s) 313, 980
Hpy166II GTNNAC 5 cut(s) 94, 247, 265, 369, 837
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 7 cut(s) 146, 230, 730, 745, 755, 800, 944
Hpy8I GTNNAC 5 cut(s) 94, 247, 265, 369, 837
HpyAV CCTTC 4 cut(s) 236, 440, 577, 842
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 2 cut(s) 171, 361
HpyF3I CTNAG 5 cut(s) 212, 492, 672, 753, 890
HpySE526I ACGT 1 cut(s) 571
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 4 cut(s) 700, 748, 843, 1005
Kpn2I TCCGGA 1 cut(s) 943
KpnI GGTACC 1 cut(s) 353
KspAI GTTAAC 2 cut(s) 265, 369
Kzo9I GATC 3 cut(s) 319, 551, 732
LmnI GCTCC 2 cut(s) 652, 819
MaeI CTAG 3 cut(s) 146, 857, 900
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 1 cut(s) 14
MalI GATC 3 cut(s) 321, 553, 734
MboI GATC 3 cut(s) 319, 551, 732
MboII GAAGA 5 cut(s) 343, 404, 451, 727, 802
MflI RGATCY 3 cut(s) 319, 551, 732
MhlI GDGCHC 1 cut(s) 975
MluCI AATT 8 cut(s) 51, 113, 295, 477, 715, 930, 936, 997
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 7 cut(s) 30, 357, 496, 624, 737, 756, 830
MroI TCCGGA 1 cut(s) 943
MseI TTAA 5 cut(s) 264, 324, 368, 528, 939
MslI CAYNNNNRTG 1 cut(s) 832
MspI CCGG 2 cut(s) 194, 944
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 2 cut(s) 171, 543
MvaI CCWGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 1019
NdeII GATC 3 cut(s) 319, 551, 732
NlaIII CATG 4 cut(s) 700, 748, 843, 1005
NlaIV GGNNCC 2 cut(s) 351, 553
NmuCI GTSAC 1 cut(s) 14
NspI RCATGY 1 cut(s) 843
PagI TCATGA 1 cut(s) 744
PceI AGGCCT 1 cut(s) 766
PciI ACATGT 1 cut(s) 839
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PctI GAATGC 2 cut(s) 171, 543
PfeI GAWTC 3 cut(s) 254, 304, 682
PscI ACATGT 1 cut(s) 839
PshBI ATTAAT 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 351, 553
PsuI RGATCY 3 cut(s) 319, 551, 732
RsaI GTAC 2 cut(s) 84, 351
RsaNI GTAC 2 cut(s) 83, 350
RseI CAYNNNNRTG 1 cut(s) 832
SacI GAGCTC 1 cut(s) 975
SaqAI TTAA 5 cut(s) 264, 324, 368, 528, 939
Sau3AI GATC 3 cut(s) 319, 551, 732
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 975
SfcI CTRYAG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 832
SmlI CTYRAG 2 cut(s) 203, 728
SmoI CTYRAG 2 cut(s) 203, 728
Sse9I AATT 8 cut(s) 51, 113, 295, 477, 715, 930, 936, 997
SseBI AGGCCT 1 cut(s) 766
SsiI CCGC 1 cut(s) 347
SspMI CTAG 3 cut(s) 146, 857, 900
SstI GAGCTC 1 cut(s) 975
StuI AGGCCT 1 cut(s) 766
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 2 cut(s) 153, 767
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 574
TaqI TCGA 3 cut(s) 702, 738, 822
TasI AATT 8 cut(s) 51, 113, 295, 477, 715, 930, 936, 997
TfiI GAWTC 3 cut(s) 254, 304, 682
Tru1I TTAA 5 cut(s) 264, 324, 368, 528, 939
Tru9I TTAA 5 cut(s) 264, 324, 368, 528, 939
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 9 cut(s) 17, 267, 296, 405, 733, 798, 861, 990, 1006
VspI ATTAAT 1 cut(s) 939
XagI CCTNNNNNAGG 1 cut(s) 361
XapI RAATTY 3 cut(s) 113, 295, 997
XbaI TCTAGA 1 cut(s) 145
XceI RCATGY 1 cut(s) 843
XspI CTAG 3 cut(s) 146, 857, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.