Rh1AG436100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000140
Physical Location & Seq
Reverse (-)
66071931 .. 66072371
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG436100.1

Sequence Viewer

Length: 441 bp
ATGTGTTTTTCAAGTCTCAAAACCTTGAGTTTCATAAACGTAACATTTACAAATGAAGACTCTACCAATCAACTATTTTCTAGCTGCCCGGTCCTTGAAGAGTTGACTTTGAATCAATGTCGGTGGTGGGATATCAAGGCTCTCAATGTTCTTGCGCCGAAGCTCCTGAGGTTAACTATAATCGAACCTGCCTACAATGCAAATGAACCAGAAGAATTTCGGAATTGCCGGATCGCAGTTCTTGGAACTAATCTCATGCATTTCAAGTATGAAGGTATCTTCAGGCACGAGTATTACTTATGCAATTCACCATCACTGGATAAGGCATGCATTGAGGGTTTTCCAAAGGTTTTGGAACACGGCTACTATCGATTGTATAGGATTCTTCGGTGTATCTCTAATCTAAAAGATTTAGAGCGAGATTCGGCTGGTATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

146

Amino Acids

17.01

Weight (kDa)

6.29

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 265
AgsI TTSAA 4 cut(s) 12, 98, 112, 265
AluBI AGCT 2 cut(s) 84, 163
AluI AGCT 2 cut(s) 84, 163
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 216
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 300
AvaII GGWCC 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 167
BauI CACGAG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 376
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 321
Bse21I CCTNAGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 370
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 370
BsiSI CCGG 2 cut(s) 89, 229
BsmAI GTCTC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 159
BspDI ATCGAT 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 321
BssMI GATC 1 cut(s) 231
BssSI CACGAG 1 cut(s) 287
Bst2BI CACGAG 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 370
Bsu36I CCTNAGG 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 314
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 2 cut(s) 256, 327
CviJI RGCY 5 cut(s) 84, 140, 163, 363, 428
CviKI_1 RGCY 5 cut(s) 84, 140, 163, 363, 428
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 167
EcoRV GATATC 1 cut(s) 133
EcoT22I ATGCAT 2 cut(s) 261, 332
FaeI CATG 2 cut(s) 259, 330
FaiI YATR 9 cut(s) 35, 179, 257, 270, 301, 328, 378, 434, 439
FatI CATG 2 cut(s) 255, 326
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 85
HapII CCGG 2 cut(s) 89, 229
HhaI GCGC 1 cut(s) 157
Hin1II CATG 2 cut(s) 259, 330
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 2 cut(s) 105, 174
HindII GTYRAC 2 cut(s) 105, 174
HinfI GANTC 4 cut(s) 59, 112, 382, 422
HpaI GTTAAC 1 cut(s) 174
HpaII CCGG 2 cut(s) 89, 229
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 2 cut(s) 105, 174
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 105, 174
HpyAV CCTTC 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 200, 259, 303, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 259, 330
HspAI GCGC 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 8 cut(s) 102, 179, 201, 222, 242, 268, 302, 414
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 5 cut(s) 68, 110, 224, 271, 377
MluCI AATT 3 cut(s) 215, 223, 304
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 2 cut(s) 162, 328
Mph1103I ATGCAT 2 cut(s) 261, 332
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 173
MspI CCGG 2 cut(s) 89, 229
MspR9I CCNGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 231
NlaIII CATG 2 cut(s) 259, 330
NsiI ATGCAT 2 cut(s) 261, 332
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 3 cut(s) 112, 382, 422
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 89
SetI ASST 8 cut(s) 26, 42, 86, 165, 173, 190, 277, 351
SfcI CTRYAG 1 cut(s) 437
SinI GGWCC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SphI GCATGC 1 cut(s) 330
Sse9I AATT 3 cut(s) 215, 223, 304
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 183, 370
TasI AATT 3 cut(s) 215, 223, 304
TfiI GAWTC 3 cut(s) 112, 382, 422
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 321
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 4 cut(s) 22, 69, 219, 285
TspRI CASTG 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 1 cut(s) 81
Zsp2I ATGCAT 2 cut(s) 261, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.