AT5G38590

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Reverse (-)
15451910 .. 15453928
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38590.4

Sequence Viewer

Length: 870 bp
ATGGACAAAATCAATGGATTGCCTGATGATTTGCTGGTGAAGATTTTATCGTATGTTCCAACGGATATTGCTGTATCCACTAGCATTTTGTCTAAGCGATGGGAGTTTCTTTGGATGTGGTTGCCTAATCTCGACTACACTTCTCGGTGGTGTAGAAAGCCCGGTGACGTTGGACTTAGGGACTTTATCCACAAGAATCTGCCATTACATAGAGCTCCCGTCATAGAAAGCTTGCGTTTTCATTCTAATAGCCCTGATATTAAACCTGAAGATATCAGACGATGGATTGAAATTGCAGTTTCACGCCATGTACATGATCTTGATATTGATCATTTTTCGGAGAATGAAAACATATTCCTGAGTAGCTTTTTTGCCTGCAAATCGCTCGTGACCTTGAAACTAAGAAGCGTGACTCTCAGGGATATTCCCTCTATGGTTTGTCTCCCTTCTCTGAAAACTTTGCTACTTGACAATGTGTCATTTGTAGAAGGAAAATCTCTTCAGGAGCTTCTATCTATTTGTCCTGTTCTTGAAGATCTATCGGTGTATTGTGATGACTATGAAAATACAAAAGAGTTAACTATTGTTGTCCCGTCTTTGCTGAGTTTATCACTCTATATACCTGATGAATGGTTGTTAGATGGGTATTGGATAGATACTCCTTCTTTGGAATATTTGAAACTTGAGGATTGGAATTCTTGTGATCACTTATCTTTGATTAAGAATATGCCTAAGCTGAGGGAAGCATATGTTGATGCAAAATGCTTTCTTCCCAAGAGTGTCATTGAATCAATCACATCTGTCAAGCATCTTACAATATGTTCAAAGGTTCCATTTCTATCAACTGCAGGTTGTCAATCTAAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

289

Amino Acids

33.2

Weight (kDa)

5.51

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 48 - 246 9.9e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 58 - 211 3.2e-15 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 115 - 140 5e-06 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 839
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 288, 485
AfaI GTAC 1 cut(s) 312
AgsI TTSAA 6 cut(s) 290, 397, 533, 679, 788, 825
AhdI GACNNNNNGTC 1 cut(s) 475
AluBI AGCT 5 cut(s) 215, 231, 366, 508, 736
AluI AGCT 5 cut(s) 215, 231, 366, 508, 736
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 694
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 49, 176
BanII GRGCYC 1 cut(s) 217
BauI CACGAG 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 217
BbvCI CCTCAGC 1 cut(s) 737
BccI CCATC 3 cut(s) 93, 276, 635
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciVI GTATCC 1 cut(s) 85
BclI TGATCA 2 cut(s) 328, 703
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 846
BfuAI ACCTGC 1 cut(s) 839
BfuI GTATCC 1 cut(s) 85
BglII AGATCT 1 cut(s) 535
Bme1390I CCNGG 1 cut(s) 162
BmeRI GACNNNNNGTC 1 cut(s) 475
BmiI GGNNCC 1 cut(s) 831
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 745, 817
Bpu10I CCTNAGC 2 cut(s) 732, 737
BpuEI CTTGAG 1 cut(s) 704
BpuMI CCSGG 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 327
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 327
BseMII CTCAG 4 cut(s) 350, 430, 593, 728
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 2 cut(s) 194, 575
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 2 cut(s) 194, 575
Bsp1286I GDGCHC 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 4 cut(s) 316, 328, 535, 703
BspCNI CTCAG 4 cut(s) 351, 429, 594, 729
BspLI GGNNCC 1 cut(s) 831
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 310
BssMI GATC 4 cut(s) 316, 328, 535, 703
BssSI CACGAG 1 cut(s) 386
Bst2BI CACGAG 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 504
BstAUI TGTACA 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 233, 376
BstDEI CTNAG 8 cut(s) 93, 176, 359, 401, 416, 602, 732, 737
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 4 cut(s) 319, 331, 538, 706
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 4 cut(s) 316, 328, 535, 703
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BsuI GTATCC 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 839
Cac8I GCNNGC 2 cut(s) 233, 376
Csp6I GTAC 1 cut(s) 311
CviAII CATG 2 cut(s) 308, 314
CviJI RGCY 7 cut(s) 160, 215, 231, 252, 366, 508, 736
CviKI_1 RGCY 7 cut(s) 160, 215, 231, 252, 366, 508, 736
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 8 cut(s) 93, 176, 359, 401, 416, 602, 732, 737
DpnI GATC 4 cut(s) 318, 330, 537, 705
DpnII GATC 4 cut(s) 316, 328, 535, 703
DriI GACNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 504
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 288, 485
EcoICRI GAGCTC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 694
EcoRV GATATC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 2 cut(s) 311, 317
FaqI GGGAC 2 cut(s) 194, 575
FatI CATG 2 cut(s) 307, 313
FauNDI CATATG 1 cut(s) 748
FbaI TGATCA 2 cut(s) 328, 703
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 217
FspBI CTAG 1 cut(s) 81
HapII CCGG 1 cut(s) 162
Hin1II CATG 2 cut(s) 311, 317
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 3 cut(s) 196, 412, 788
HpaI GTTAAC 1 cut(s) 579
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 49, 176
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 3 cut(s) 278, 340, 453
Hpy188III TCNNGA 6 cut(s) 131, 320, 358, 388, 503, 530
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 3 cut(s) 456, 482, 672
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 4 cut(s) 296, 378, 758, 848
HpyF3I CTNAG 8 cut(s) 93, 176, 359, 401, 416, 602, 732, 737
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 311, 317
Ksp22I TGATCA 2 cut(s) 328, 703
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 4 cut(s) 316, 328, 535, 703
LmnI GCTCC 2 cut(s) 220, 505
LweI GCATC 2 cut(s) 745, 817
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 3 cut(s) 164, 388, 409
MalI GATC 4 cut(s) 318, 330, 537, 705
MboI GATC 4 cut(s) 316, 328, 535, 703
MboII GAAGA 5 cut(s) 52, 281, 491, 545, 761
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 3 cut(s) 291, 694, 863
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 2 cut(s) 83, 151
MnlI CCTC 3 cut(s) 439, 679, 732
MseI TTAA 3 cut(s) 261, 578, 720
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 162
NciI CCSGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 748
NdeII GATC 4 cut(s) 316, 328, 535, 703
NlaIII CATG 2 cut(s) 311, 317
NlaIV GGNNCC 1 cut(s) 831
NmuCI GTSAC 3 cut(s) 164, 388, 409
PfeI GAWTC 2 cut(s) 196, 788
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 831
PstI CTGCAG 1 cut(s) 850
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 3 cut(s) 261, 578, 720
Sau3AI GATC 4 cut(s) 316, 328, 535, 703
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 2 cut(s) 745, 817
SfcI CTRYAG 1 cut(s) 846
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 3 cut(s) 291, 694, 863
SspI AATATT 1 cut(s) 674
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 160
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 132
TasI AATT 3 cut(s) 291, 694, 863
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 2 cut(s) 196, 788
Tru1I TTAA 3 cut(s) 261, 578, 720
Tru9I TTAA 3 cut(s) 261, 578, 720
TseFI GTSAC 3 cut(s) 164, 388, 409
Tsp45I GTSAC 3 cut(s) 164, 388, 409
TspDTI ATGAA 4 cut(s) 230, 360, 576, 642
TspGWI ACGGA 1 cut(s) 77
XapI RAATTY 1 cut(s) 694
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.