Rorug05G0399400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000140
Physical Location & Seq
Reverse (-)
54892643 .. 54895429
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0399400.1

Sequence Viewer

Length: 312 bp
ATGTCAGTGTGTAGAGAAAACGCGAACATCCGAGACAACCACCGCCGTGTGCTGGCGGAGAAATTCGAGCTGCGGCGGAACCTGTACAAGGCGCTGTGCAAAGACACGAGCCTCCCCGACGAGTTGCGGGAGGAGAATCGGTACAAGCTCTCGAAGCTTCCTCGGAACAGCTCCTTCACCCGAATCAGGAACCGCTGCATCTTCTCCGGCCGAGGCCGCGCCGTCTACGAGACCTTCCGCATGTCCCGTATCGTCTTCCGCGCTCTCGCCTCCAAGGGCATGCTCAACGGCGTCAAGAAGGCTTCCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

103

Amino Acids

12.2

Weight (kDa)

10.9

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 49 - 102 5.9e-24 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AccII CGCG 3 cut(s) 23, 219, 261
AciI CCGC 9 cut(s) 43, 56, 73, 76, 127, 193, 217, 238, 259
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 2 cut(s) 86, 143
AfiI CCNNNNNNNGG 3 cut(s) 52, 88, 186
AjnI CCWGG 1 cut(s) 305
AleI CACNNNNGTG 1 cut(s) 45
AluBI AGCT 4 cut(s) 70, 148, 157, 171
AluI AGCT 4 cut(s) 70, 148, 157, 171
Alw26I GTCTC 2 cut(s) 27, 224
AoxI GGCC 2 cut(s) 208, 214
ApeKI GCWGC 2 cut(s) 70, 195
ApoI RAATTY 1 cut(s) 62
AspLEI GCGC 3 cut(s) 94, 221, 263
AsuHPI GGTGA 1 cut(s) 169
BauI CACGAG 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 57, 182
BceAI ACGGC 3 cut(s) 30, 206, 304
BciT130I CCWGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 27, 224
BfoI RGCGCY 1 cut(s) 95
BisI GCNGC 4 cut(s) 71, 74, 196, 217
BlsI GCNGC 4 cut(s) 72, 75, 197, 218
Bme1390I CCNGG 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 80, 191
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 161, 211, 273
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 88, 186
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 3 cut(s) 161, 211, 273
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 52, 88, 186
BseRI GAGGAG 1 cut(s) 146
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 57, 182
Bsh1236I CGCG 3 cut(s) 23, 219, 261
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 210, 216
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 52, 88, 186
BsmAI GTCTC 2 cut(s) 27, 224
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 2 cut(s) 210, 216
Bso31I GGTCTC 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 84
BspACI CCGC 9 cut(s) 43, 56, 73, 76, 127, 193, 217, 238, 259
BspANI GGCC 2 cut(s) 210, 216
BspFNI CGCG 3 cut(s) 23, 219, 261
BspLI GGNNCC 2 cut(s) 80, 191
BspTNI GGTCTC 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 84
BssECI CCNNGG 3 cut(s) 161, 211, 273
BssNI GRCGYC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 307
BstACI GRCGYC 1 cut(s) 291
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 54, 281
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 27
BstFNI CGCG 3 cut(s) 23, 219, 261
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 3 cut(s) 94, 221, 263
BstMAI GTCTC 2 cut(s) 27, 224
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 154, 216
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 244, 283
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 3 cut(s) 23, 219, 261
BstV1I GCAGC 2 cut(s) 57, 182
BstV2I GAAGAC 1 cut(s) 247
BstZI CGGCCG 1 cut(s) 208
BsuRI GGCC 2 cut(s) 210, 216
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 54, 281
CfoI GCGC 3 cut(s) 94, 221, 263
CseI GACGC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 85, 142
CviAII CATG 2 cut(s) 241, 280
CviJI RGCY 8 cut(s) 70, 111, 148, 157, 171, 210, 216, 302
CviKI_1 RGCY 8 cut(s) 70, 111, 148, 157, 171, 210, 216, 302
CviQI GTAC 2 cut(s) 85, 142
EaeI YGGCCR 1 cut(s) 208
EagI CGGCCG 1 cut(s) 208
EciI GGCGGA 2 cut(s) 71, 91
EclXI CGGCCG 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 224
Eco52I CGGCCG 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 244, 283
FaiI YATR 2 cut(s) 242, 281
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 240, 279
FauI CCCGC 1 cut(s) 120
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 71, 74, 196, 217
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 4 cut(s) 71, 74, 196, 217
GlaI GCGC 3 cut(s) 93, 220, 262
GluI GCNGC 4 cut(s) 71, 74, 196, 217
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 2 cut(s) 210, 216
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 280
HhaI GCGC 3 cut(s) 94, 221, 263
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 2 cut(s) 244, 283
Hin6I GCGC 3 cut(s) 92, 219, 261
HinP1I GCGC 3 cut(s) 92, 219, 261
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 136, 183
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 32, 165
Hpy188III TCNNGA 3 cut(s) 151, 187, 295
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 184, 244, 292
HpyCH4V TGCA 2 cut(s) 99, 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 216
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 2 cut(s) 244, 283
HspAI GCGC 3 cut(s) 92, 219, 261
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 5 cut(s) 38, 95, 172, 220, 292
Lsp1109I GCAGC 2 cut(s) 57, 182
LweI GCATC 1 cut(s) 207
MboII GAAGA 2 cut(s) 193, 247
MluCI AATT 1 cut(s) 62
MnlI CCTC 5 cut(s) 122, 124, 171, 206, 280
MslI CAYNNNNRTG 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 3 cut(s) 23, 219, 261
MwoI GCNNNNNNNGC 2 cut(s) 154, 216
NlaIII CATG 2 cut(s) 244, 283
NlaIV GGNNCC 2 cut(s) 80, 191
NmeAIII GCCGAG 1 cut(s) 236
NspI RCATGY 2 cut(s) 244, 283
OliI CACNNNNGTG 1 cut(s) 45
PaeI GCATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 136, 183
PkrI GCNGC 4 cut(s) 72, 75, 197, 218
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 80, 191
RsaI GTAC 2 cut(s) 86, 143
RsaNI GTAC 2 cut(s) 85, 142
RseI CAYNNNNRTG 1 cut(s) 45
SatI GCNGC 4 cut(s) 71, 74, 196, 217
ScrFI CCNGG 1 cut(s) 307
SetI ASST 6 cut(s) 72, 84, 150, 159, 173, 236
SfaNI GCATC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 45
SphI GCATGC 1 cut(s) 283
Sse9I AATT 1 cut(s) 62
SsiI CCGC 9 cut(s) 43, 56, 73, 76, 127, 193, 217, 238, 259
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 2 cut(s) 66, 152
TasI AATT 1 cut(s) 62
TatI WGTACW 1 cut(s) 84
TauI GCSGC 2 cut(s) 76, 219
TfiI GAWTC 2 cut(s) 136, 183
TscAI CASTG 1 cut(s) 12
TseI GCWGC 2 cut(s) 70, 195
TspRI CASTG 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 62
XceI RCATGY 2 cut(s) 244, 283
XmiI GTMKAC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.