AT1G26890

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000140
Physical Location & Seq
Forward (+)
9317589 .. 9319246
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26890.2

Sequence Viewer

Length: 1260 bp
ATGGCCACATCTATGGGTTGCTTAAGTTGTTGGTCTTTTTTTTGGGATATTATACACGACGATGAGCATATATCAACTGTTCCAGAAACCGAAAGTTGTCAGATAAACGAAACTAGAATCTGTGCTTTTCCTAACGATTTGCTCTTGCAGATCTTGCATCACGTCCCAACAAAAGAGGCAGTCGCCACTTCAATCTTGTCTAAACGATGGCGTTATGTCTGGCCGATGGTGCCTAGACTCGAATTCAAAGAAGATGACAGCGAGAGCGTGGGGTGGTTTATTGAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATAGTTTGGTTGTGGAACTCGGTCCACATTGTCCTGTTGACGTAGATGTCGGAAAGTGGGTTGAGAACGTAGTTAATAGAGGTGTGAAAGAGTTAGATTTCAATCTCCTCTGGACCGCAGAACCCACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGATTTAAGTCTATCCAACAAGATTCTAGTGAACGTTTCTTCCCCTGTTCGCCTACCATCTCTCTTAACTCTGAGTCTTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCAAGCTCCCCTGTTCTCAACTGCCTGAAGGTGGATCGACATAAGGATGACAACTTGACAAAATTTACCGTGAAAGTATCTACCTTGAAACAGTTACATTATAATACTACTCGGCGGAAGGATGGGGTAGAGGATGAGGAAGACGTGGTAGAGGAAAATGAGGTAGAGGATGATGATGATGATGATGATGATGATCTCAATAGATCCTTGGTAATAGATTCCCCTGCATTAGAAATTTTACGCTTACGTAACGTTTTGGACTATTGCTTGATAGAGAATATTTCTTGCCTTCATATAGCAAAACTCGGCTATGTTCATAACCCCGATCACAAGTTTCTGAGATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGTTGCGTGGTGTAACACCATCAAGTTCTCTCGGCTCTTGGAGTTTTATTTTGTTCCAAGCAATTTGGTAGATTGGTTGGAACCACTTATGTATTTGCTTCAAAATTCTCCTAAACTACAAATTCTTACGATTGACACTGATTCTACGTGTCTCCCACCTTCATGGAACCAGCCGAGTTCTTCTACTATTCCCGAATGCTTGTTGTCTCATTTACAGATCTTTAGGTGGGGAGGCTATGGAGGAAGAGAAGATGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

419

Amino Acids

48.1

Weight (kDa)

4.94

Isoelectric Point (pI)

64.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 41 - 78 1.4e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 122 - 237 4.1e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 124 - 240 1e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AasI GACNNNNNNGTC 1 cut(s) 365
AccB1I GGYRCC 2 cut(s) 229, 307
AciI CCGC 2 cut(s) 435, 724
AclI AACGTT 2 cut(s) 519, 861
AclWI GGATC 2 cut(s) 651, 807
AcoI YGGCCR 2 cut(s) 3, 221
AcsI RAATTY 5 cut(s) 242, 671, 843, 1102, 1119
AcuI CTGAAG 1 cut(s) 656
AfaI GTAC 2 cut(s) 578, 977
AfiI CCNNNNNNNGG 1 cut(s) 640
AflII CTTAAG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 1145
AgsI TTSAA 6 cut(s) 192, 247, 284, 421, 697, 1100
AjiI CACGTC 2 cut(s) 163, 754
AloI GAACNNNNNNTCC 2 cut(s) 509, 541
AluBI AGCT 1 cut(s) 615
AluI AGCT 1 cut(s) 615
Alw26I GTCTC 2 cut(s) 1154, 1209
AlwI GGATC 2 cut(s) 651, 807
AoxI GGCC 2 cut(s) 3, 221
ApoI RAATTY 5 cut(s) 242, 671, 843, 1102, 1119
AspS9I GGNCC 2 cut(s) 341, 432
AvaII GGWCC 2 cut(s) 341, 432
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 229, 307
BbsI GAAGAC 2 cut(s) 554, 756
BccI CCATC 5 cut(s) 201, 220, 550, 725, 1025
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BcoDI GTCTC 2 cut(s) 1154, 1209
BfaI CTAG 4 cut(s) 114, 234, 317, 512
BfrI CTTAAG 1 cut(s) 22
BglII AGATCT 3 cut(s) 150, 950, 1215
Bme18I GGWCC 2 cut(s) 341, 432
BmgBI CACGTC 2 cut(s) 163, 754
BmgT120I GGNCC 2 cut(s) 341, 432
BmiI GGNNCC 4 cut(s) 231, 309, 1080, 1166
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 554, 756
BsaAI YACGTR 2 cut(s) 857, 1146
BsaBI GATNNNNATC 2 cut(s) 420, 801
BsaJI CCNNGG 1 cut(s) 816
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse3DI GCAATG 1 cut(s) 290
Bse8I GATNNNNATC 2 cut(s) 420, 801
BseDI CCNNGG 1 cut(s) 816
BseGI GGATG 4 cut(s) 661, 736, 748, 784
BseJI GATNNNNATC 2 cut(s) 420, 801
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 548, 938
BseRI GAGGAG 1 cut(s) 416
BshFI GGCC 2 cut(s) 5, 223
BshNI GGYRCC 2 cut(s) 229, 307
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 2 cut(s) 1154, 1209
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 1199
BsnI GGCC 2 cut(s) 5, 223
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 7 cut(s) 150, 643, 802, 812, 934, 950, 1215
BspACI CCGC 2 cut(s) 435, 724
BspANI GGCC 2 cut(s) 5, 223
BspCNI CTCAG 2 cut(s) 549, 939
BspLI GGNNCC 4 cut(s) 231, 309, 1080, 1166
BspPI GGATC 2 cut(s) 651, 807
BspT107I GGYRCC 2 cut(s) 229, 307
BspTI CTTAAG 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 576
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 7 cut(s) 150, 643, 802, 812, 934, 950, 1215
BssT1I CCWWGG 1 cut(s) 816
Bst4CI ACNGT 3 cut(s) 79, 679, 702
Bst6I CTCTTC 1 cut(s) 1237
BstAFI CTTAAG 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 154
BstAUI TGTACA 1 cut(s) 576
BstBAI YACGTR 2 cut(s) 857, 1146
BstDEI CTNAG 3 cut(s) 456, 557, 947
BstF5I GGATG 4 cut(s) 661, 736, 748, 784
BstKTI GATC 7 cut(s) 153, 646, 805, 815, 937, 953, 1218
BstMAI GTCTC 2 cut(s) 1154, 1209
BstMBI GATC 7 cut(s) 150, 643, 802, 812, 934, 950, 1215
BstMWI GCNNNNNNNGC 2 cut(s) 154, 229
BstNSI RCATGY 1 cut(s) 474
BstSNI TACGTA 1 cut(s) 857
BstV2I GAAGAC 2 cut(s) 554, 756
BstX2I RGATCY 4 cut(s) 150, 812, 950, 1215
BstXI CCANNNNNNTGG 3 cut(s) 13, 997, 1161
BstYI RGATCY 4 cut(s) 150, 812, 950, 1215
BsuRI GGCC 2 cut(s) 5, 223
BtrI CACGTC 2 cut(s) 163, 754
BtsCI GGATG 4 cut(s) 661, 736, 748, 784
BtsIMutI CAGTG 1 cut(s) 1134
Cfr13I GGNCC 2 cut(s) 341, 432
Csp6I GTAC 2 cut(s) 577, 976
CviAII CATG 2 cut(s) 471, 1161
CviJI RGCY 9 cut(s) 5, 223, 603, 615, 918, 994, 1033, 1171, 1233
CviKI_1 RGCY 9 cut(s) 5, 223, 603, 615, 918, 994, 1033, 1171, 1233
CviQI GTAC 2 cut(s) 577, 976
DdeI CTNAG 3 cut(s) 456, 557, 947
DpnI GATC 7 cut(s) 152, 645, 804, 814, 936, 952, 1217
DpnII GATC 7 cut(s) 150, 643, 802, 812, 934, 950, 1215
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 2 cut(s) 3, 221
Eam1104I CTCTTC 1 cut(s) 1237
EarI CTCTTC 1 cut(s) 1237
EciI GGCGGA 1 cut(s) 739
Eco105I TACGTA 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 341, 432
Eco57I CTGAAG 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 816
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 2 cut(s) 474, 1164
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 470, 1160
FauNDI CATATG 1 cut(s) 972
FokI GGATG 4 cut(s) 668, 743, 755, 791
FspBI CTAG 4 cut(s) 114, 234, 317, 512
HaeIII GGCC 2 cut(s) 5, 223
Hin1II CATG 2 cut(s) 474, 1164
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 7 cut(s) 117, 237, 508, 559, 590, 827, 1139
Hpy166II GTNNAC 4 cut(s) 344, 358, 517, 577
Hpy188I TCNGA 4 cut(s) 102, 371, 558, 948
Hpy188III TCNNGA 3 cut(s) 83, 430, 1190
Hpy8I GTNNAC 4 cut(s) 344, 358, 517, 577
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 631, 721, 908, 1167
HpyCH4III ACNGT 3 cut(s) 79, 679, 702
HpyCH4IV ACGT 8 cut(s) 162, 360, 387, 519, 753, 856, 861, 1145
HpyCH4V TGCA 5 cut(s) 148, 157, 295, 474, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 229
HpyF3I CTNAG 3 cut(s) 456, 557, 947
HpySE526I ACGT 8 cut(s) 162, 360, 387, 519, 753, 856, 861, 1145
Hsp92II CATG 2 cut(s) 474, 1164
Kzo9I GATC 7 cut(s) 150, 643, 802, 812, 934, 950, 1215
LmnI GCTCC 1 cut(s) 620
LweI GCATC 1 cut(s) 166
MaeI CTAG 4 cut(s) 114, 234, 317, 512
MaeII ACGT 8 cut(s) 162, 360, 387, 519, 753, 856, 861, 1145
MaeIII GTNAC 3 cut(s) 702, 857, 1010
MalI GATC 7 cut(s) 152, 645, 804, 814, 936, 952, 1217
MboI GATC 7 cut(s) 150, 643, 802, 812, 934, 950, 1215
MboII GAAGA 9 cut(s) 263, 516, 554, 599, 761, 951, 1170, 1254, 1259
MflI RGATCY 4 cut(s) 150, 812, 950, 1215
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 242, 671, 843, 1060, 1102, 1119
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 231, 568
MmeI TCCRAC 3 cut(s) 349, 525, 1056
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 23, 393, 491, 551
MslI CAYNNNNRTG 5 cut(s) 11, 60, 654, 971, 1159
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 1199
MwoI GCNNNNNNNGC 2 cut(s) 154, 229
NdeI CATATG 1 cut(s) 972
NdeII GATC 7 cut(s) 150, 643, 802, 812, 934, 950, 1215
NlaIII CATG 2 cut(s) 474, 1164
NlaIV GGNNCC 4 cut(s) 231, 309, 1080, 1166
NmeAIII GCCGAG 4 cut(s) 700, 894, 1009, 1197
NspI RCATGY 1 cut(s) 474
PctI GAATGC 1 cut(s) 1199
PfeI GAWTC 5 cut(s) 117, 508, 590, 827, 1139
PleI GAGTC 2 cut(s) 231, 567
PpsI GAGTC 2 cut(s) 231, 567
Ppu21I YACGTR 2 cut(s) 857, 1146
PsiI TTATAA 1 cut(s) 711
Psp1406I AACGTT 2 cut(s) 519, 861
PspN4I GGNNCC 4 cut(s) 231, 309, 1080, 1166
PspPI GGNCC 2 cut(s) 341, 432
PsuI RGATCY 4 cut(s) 150, 812, 950, 1215
RsaI GTAC 2 cut(s) 578, 977
RsaNI GTAC 2 cut(s) 577, 976
RseI CAYNNNNRTG 5 cut(s) 11, 60, 654, 971, 1159
SaqAI TTAA 4 cut(s) 23, 393, 491, 551
Sau3AI GATC 7 cut(s) 150, 643, 802, 812, 934, 950, 1215
Sau96I GGNCC 2 cut(s) 341, 432
SchI GAGTC 2 cut(s) 231, 568
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 2 cut(s) 341, 432
SmiMI CAYNNNNRTG 5 cut(s) 11, 60, 654, 971, 1159
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SnaBI TACGTA 1 cut(s) 857
Sse9I AATT 6 cut(s) 242, 671, 843, 1060, 1102, 1119
SsiI CCGC 2 cut(s) 435, 724
SspI AATATT 1 cut(s) 889
SspMI CTAG 4 cut(s) 114, 234, 317, 512
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 3 cut(s) 79, 679, 702
TaiI ACGT 8 cut(s) 165, 363, 390, 522, 756, 859, 864, 1148
TaqI TCGA 2 cut(s) 240, 646
TaqII GACCGA 1 cut(s) 329
TasI AATT 6 cut(s) 242, 671, 843, 1060, 1102, 1119
TatI WGTACW 2 cut(s) 576, 975
TfiI GAWTC 5 cut(s) 117, 508, 590, 827, 1139
Tru1I TTAA 4 cut(s) 23, 393, 491, 551
Tru9I TTAA 4 cut(s) 23, 393, 491, 551
TscAI CASTG 1 cut(s) 1141
TspDTI ATGAA 3 cut(s) 890, 914, 1149
TspRI CASTG 1 cut(s) 1141
Vha464I CTTAAG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 341, 432
XapI RAATTY 5 cut(s) 242, 671, 843, 1102, 1119
XceI RCATGY 1 cut(s) 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 1002
XspI CTAG 4 cut(s) 114, 234, 317, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.