AT5G56380

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Reverse (-)
22838633 .. 22841117
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56380.2

Sequence Viewer

Length: 1320 bp
ATGGATAGAATCAGTCACTTAGCTGACGAAATCTTATCGAAGATTTTGTCTTTTCTTGGGACAAAAGATGTTATGCAAACTATGCTCTTGTCTAAACGCTTTAAGTCTCAGTGGTTGTTGGTGCCAAAACTTGAGTTCGATGATAGCACTCACTTGCCTGAAACTTGGGGATATCAAGAGCCTGATTATGGGAATTTTCGACGGTTTGTGGACAGATCGTTGCTGTCACGTGAAGGTCGTGTTCTACAAACTCTGTTTCTCAAGTTAGGTCGACAATGTTCATATGATGATATTGCGATTTGGGTTGGAATCGCAGTGAAACGTGGTCTAATGGAGCTGAAACTCAAATACACTGACAGCTATTATCCAAAGCGTAGTTCTCTTCCAAGAAGTCTTTACACTTGTGAAACACTTGTGGTCTTGAAATTGAAGAAAGGTTATTTGGATGTTCCTGATCTCGTTTGTCTTAGGTCTCTGAAAACTTTATCGCTCAGAGATATGAATTACTCCAACGCCAGTTGTCTCCTTAGACTTTTAGCCAGTTGTCCTGTTCTTGAAGAGTTGTTCATACAACAAGGTTACTATGATTCCTGCGCGTTGAGTTTCAAGATTATACTGCCTTGCTTGAAGAAGTTATCTTATCTCCCAAAAAGAAAAAAAAAGTATTCTGGGATTGACCGATCTGAAGTTTCTGGTGGAATTTCAGGACTTGTGTTAGATGCTCCTTCTTTGAAATACTTGCACATTGTAGATCGCTCGGGTCTTTTTTCGGTTAGCGAGATTATCAACATCAATGCTGTAGTGAAAGCCACTCTTGAGGTTAATGCCAGCCGACCCGAGAAGCTTCTGTATTCTCTTGTTTCCGTTGAGCATATTCGTTTATGTTTATCTGCTACAGAGGTTGTGTATCCTGTTGGACTTGGTAGCTCCTTCCATAAACTCAAACGGTTGGAGGTTTGTACATGCAAATCTGAGTGGCTCGATCTATTCATCCATCTGCTCGAAGATTCGCCTAGCTTACAGGATATCAAAATCAATCAGTGTCATCCTGTTACAAATCCCCGACCTCAATGGAATCAACCGGGCTCTGTTCCAAGATGTTTATCCTCAAGTCTTGAAACTTTGGAGTGGGTAGAGTATGGAGGAACGCATGAAGAGAAAGAACTTTCGACATATCTCTTTAAAACCGCAGTTTGTTTTAAAAAGGCGAGTTTTACCGCTAAATGGAGTGGTGGTGATGCCAACAAGAAACTGCAGATGCTTCAGGAGTTAGCCTTGTCGCCAAGGGTTTCACCCACTTGTGAGCTTGTATTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD LRR_2

Protein Analysis

439

Amino Acids

49.9

Weight (kDa)

8.89

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 1.6e-06 F-box domain
LRR_At5g56370 PF24758 100 - 214 2.3e-11 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 158 - 183 1e-05 Leucine Rich Repeat
FBD PF08387 360 - 405 2e-16 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 271
AccII CGCG 1 cut(s) 596
AciI CCGC 2 cut(s) 1188, 1218
AcsI RAATTY 2 cut(s) 193, 699
AcuI CTGAAG 2 cut(s) 705, 1247
AcvI CACGTG 1 cut(s) 230
AfaI GTAC 1 cut(s) 961
AfiI CCNNNNNNNGG 2 cut(s) 188, 1224
AgsI TTSAA 7 cut(s) 424, 430, 557, 607, 628, 733, 1118
AjuI GAANNNNNNNTTGG 4 cut(s) 361, 393, 425, 457
AluBI AGCT 7 cut(s) 23, 337, 360, 844, 927, 1017, 1306
AluI AGCT 7 cut(s) 23, 337, 360, 844, 927, 1017, 1306
Alw26I GTCTC 3 cut(s) 111, 477, 527
Ama87I CYCGRG 2 cut(s) 757, 836
ApoI RAATTY 2 cut(s) 193, 699
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 1 cut(s) 596
AsuC2I CCSGG 1 cut(s) 1083
AsuHPI GGTGA 2 cut(s) 1247, 1284
AvaI CYCGRG 2 cut(s) 757, 836
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 1088
BbrPI CACGTG 1 cut(s) 230
BccI CCATC 1 cut(s) 1002
BciVI GTATCC 1 cut(s) 918
BcnI CCSGG 1 cut(s) 1083
BcoDI GTCTC 3 cut(s) 111, 477, 527
BfaI CTAG 1 cut(s) 1014
BfmI CTRYAG 3 cut(s) 798, 894, 1253
BfuI GTATCC 1 cut(s) 918
Bme1390I CCNGG 1 cut(s) 1083
BmeT110I CYCGRG 2 cut(s) 757, 836
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 1083
BmsI GCATC 3 cut(s) 709, 1228, 1248
BpuEI CTTGAG 4 cut(s) 152, 245, 836, 1093
BpuMI CCSGG 1 cut(s) 1083
BsaAI YACGTR 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 1102
BsaI GGTCTC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 1283
BsaXI ACNNNNNCTCC 2 cut(s) 1219, 1249
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 1224
Bse1I ACTGG 2 cut(s) 516, 540
Bse8I GATNNNNATC 1 cut(s) 1102
BseDI CCNNGG 1 cut(s) 1283
BseGI GGATG 3 cut(s) 451, 990, 1045
BseJI GATNNNNATC 1 cut(s) 1102
BseLI CCNNNNNNNGG 2 cut(s) 188, 1224
BseMII CTCAG 3 cut(s) 122, 505, 963
BseNI ACTGG 2 cut(s) 516, 540
Bsh1236I CGCG 1 cut(s) 596
BshNI GGYRCC 1 cut(s) 121
BsiHKCI CYCGRG 2 cut(s) 757, 836
BsiSI CCGG 1 cut(s) 1082
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 188, 1224
BsmAI GTCTC 3 cut(s) 111, 477, 527
BsmFI GGGAC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 477
BsoBI CYCGRG 2 cut(s) 757, 836
Bsp1286I GDGCHC 1 cut(s) 1088
Bsp1407I TGTACA 1 cut(s) 959
Bsp143I GATC 5 cut(s) 215, 454, 680, 751, 982
BspACI CCGC 2 cut(s) 1188, 1218
BspCNI CTCAG 3 cut(s) 121, 504, 964
BspFNI CGCG 1 cut(s) 596
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 1257
BspT107I GGYRCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 477
BsrGI TGTACA 1 cut(s) 959
BsrI ACTGG 2 cut(s) 516, 540
BssECI CCNNGG 1 cut(s) 1283
BssMI GATC 5 cut(s) 215, 454, 680, 751, 982
BssT1I CCWWGG 1 cut(s) 1283
Bst4CI ACNGT 2 cut(s) 204, 948
Bst6I CTCTTC 3 cut(s) 387, 552, 1149
BstAPI GCANNNNNTGC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 959
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 829
BstDEI CTNAG 6 cut(s) 19, 108, 467, 491, 527, 972
BstF5I GGATG 3 cut(s) 451, 990, 1045
BstFNI CGCG 1 cut(s) 596
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 5 cut(s) 218, 457, 683, 754, 985
BstMAI GTCTC 3 cut(s) 111, 477, 527
BstMBI GATC 5 cut(s) 215, 454, 680, 751, 982
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 966
BstSCI CCNGG 1 cut(s) 1081
BstSFI CTRYAG 3 cut(s) 798, 894, 1253
BstUI CGCG 1 cut(s) 596
BsuI GTATCC 1 cut(s) 918
BtsCI GGATG 3 cut(s) 451, 990, 1045
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 4 cut(s) 116, 321, 351, 1046
Cac8I GCNNGC 1 cut(s) 829
CfoI GCGC 1 cut(s) 596
Csp6I GTAC 1 cut(s) 960
CviAII CATG 2 cut(s) 963, 1151
CviQI GTAC 1 cut(s) 960
DdeI CTNAG 6 cut(s) 19, 108, 467, 491, 527, 972
DpnI GATC 5 cut(s) 217, 456, 682, 753, 984
DpnII GATC 5 cut(s) 215, 454, 680, 751, 982
DraI TTTAAA 2 cut(s) 1183, 1201
Eam1104I CTCTTC 3 cut(s) 387, 552, 1149
EarI CTCTTC 3 cut(s) 387, 552, 1149
Eco130I CCWWGG 1 cut(s) 1283
Eco24I GRGCYC 1 cut(s) 1088
Eco31I GGTCTC 1 cut(s) 477
Eco32I GATATC 2 cut(s) 173, 1027
Eco57I CTGAAG 2 cut(s) 705, 1247
Eco72I CACGTG 1 cut(s) 230
Eco88I CYCGRG 2 cut(s) 757, 836
EcoRV GATATC 2 cut(s) 173, 1027
EcoT14I CCWWGG 1 cut(s) 1283
EcoT38I GRGCYC 1 cut(s) 1088
ErhI CCWWGG 1 cut(s) 1283
FaeI CATG 2 cut(s) 966, 1154
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 73
FatI CATG 2 cut(s) 962, 1150
FauNDI CATATG 1 cut(s) 283
FblI GTMKAC 1 cut(s) 271
FokI GGATG 3 cut(s) 458, 977, 1032
FriOI GRGCYC 1 cut(s) 1088
FspBI CTAG 1 cut(s) 1014
GlaI GCGC 1 cut(s) 595
HapII CCGG 1 cut(s) 1082
HhaI GCGC 1 cut(s) 596
Hin1II CATG 2 cut(s) 966, 1154
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 5 cut(s) 9, 309, 587, 1007, 1075
HpaII CCGG 1 cut(s) 1082
HphI GGTGA 2 cut(s) 1247, 1284
Hpy166II GTNNAC 2 cut(s) 211, 272
Hpy188I TCNGA 4 cut(s) 477, 494, 685, 973
Hpy188III TCNNGA 9 cut(s) 176, 421, 452, 554, 607, 705, 815, 1115, 1265
Hpy8I GTNNAC 2 cut(s) 211, 272
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 3 cut(s) 227, 735, 940
HpyCH4III ACNGT 2 cut(s) 204, 948
HpyCH4IV ACGT 2 cut(s) 229, 322
HpyCH4V TGCA 4 cut(s) 76, 742, 966, 1255
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 6 cut(s) 19, 108, 467, 491, 527, 972
HpySE526I ACGT 2 cut(s) 229, 322
Hsp92II CATG 2 cut(s) 966, 1154
HspAI GCGC 1 cut(s) 594
Kzo9I GATC 5 cut(s) 215, 454, 680, 751, 982
LmnI GCTCC 3 cut(s) 334, 727, 932
LweI GCATC 3 cut(s) 709, 1228, 1248
MaeI CTAG 1 cut(s) 1014
MaeII ACGT 2 cut(s) 229, 322
MaeIII GTNAC 4 cut(s) 14, 225, 578, 1051
MalI GATC 5 cut(s) 217, 456, 682, 753, 984
MboI GATC 5 cut(s) 215, 454, 680, 751, 982
MboII GAAGA 7 cut(s) 52, 374, 442, 569, 640, 1016, 1166
MhlI GDGCHC 1 cut(s) 1088
MluCI AATT 5 cut(s) 193, 425, 502, 699, 1315
MmeI TCCRAC 4 cut(s) 286, 534, 895, 930
MnlI CCTC 6 cut(s) 811, 892, 946, 1077, 1117, 1136
MseI TTAA 5 cut(s) 102, 822, 1182, 1200, 1314
MspI CCGG 1 cut(s) 1082
MspR9I CCNGG 1 cut(s) 1083
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 1083
NdeI CATATG 1 cut(s) 283
NdeII GATC 5 cut(s) 215, 454, 680, 751, 982
NlaIII CATG 2 cut(s) 966, 1154
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 2 cut(s) 14, 225
NspI RCATGY 1 cut(s) 966
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PfeI GAWTC 5 cut(s) 9, 309, 587, 1007, 1075
PmaCI CACGTG 1 cut(s) 230
PmlI CACGTG 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 230
PspCI CACGTG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 1257
RsaI GTAC 1 cut(s) 961
RsaNI GTAC 1 cut(s) 960
SalI GTCGAC 1 cut(s) 270
SaqAI TTAA 5 cut(s) 102, 822, 1182, 1200, 1314
Sau3AI GATC 5 cut(s) 215, 454, 680, 751, 982
ScrFI CCNGG 1 cut(s) 1083
SduI GDGCHC 1 cut(s) 1088
SfaNI GCATC 3 cut(s) 709, 1228, 1248
SfcI CTRYAG 3 cut(s) 798, 894, 1253
SmlI CTYRAG 4 cut(s) 131, 260, 815, 1108
SmoI CTYRAG 4 cut(s) 131, 260, 815, 1108
Sse9I AATT 5 cut(s) 193, 425, 502, 699, 1315
SsiI CCGC 2 cut(s) 1188, 1218
SspMI CTAG 1 cut(s) 1014
StyD4I CCNGG 1 cut(s) 1081
StyI CCWWGG 1 cut(s) 1283
TaaI ACNGT 2 cut(s) 204, 948
TaiI ACGT 2 cut(s) 232, 325
TaqI TCGA 7 cut(s) 38, 138, 199, 271, 981, 1002, 1169
TaqII GACCGA 1 cut(s) 693
TasI AATT 5 cut(s) 193, 425, 502, 699, 1315
TatI WGTACW 1 cut(s) 959
TfiI GAWTC 5 cut(s) 9, 309, 587, 1007, 1075
Tru1I TTAA 5 cut(s) 102, 822, 1182, 1200, 1314
Tru9I TTAA 5 cut(s) 102, 822, 1182, 1200, 1314
TscAI CASTG 4 cut(s) 116, 321, 358, 1046
TseFI GTSAC 2 cut(s) 14, 225
Tsp45I GTSAC 2 cut(s) 14, 225
TspDTI ATGAA 5 cut(s) 270, 515, 556, 979, 1167
TspGWI ACGGA 1 cut(s) 853
TspRI CASTG 4 cut(s) 116, 321, 358, 1046
XapI RAATTY 2 cut(s) 193, 699
XceI RCATGY 1 cut(s) 966
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.