Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000140

Physical Location & Seq

Genomic Coordinates Forward (+)

22941750 .. 22943587

Gene Structure 1838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTGGTTGTCCAAACTCGAGTTCTACTTTAGTGATGGTTCAGAGTCTGCATGCCTGAGGGATTTTATTGCCAAGAATCTGCCATTACACAAAGCTCCAATCATAGAAAGCCTGCGTTTTTGCTCTTTTTTTGGATCACTTCAACCTAAGGATTTGAAATCGTGGGTTAGAATTGCAGTTTCTCGCTGTGTGCGTGAGCTAAGCATCAGTTTACATGATACGACAGCTGCTGTATCATTGCCCAGTAGTTTGTATACCTGCAAATCGCTCGTGACTTTGAAACTTTACGGTAAGAAGGTTCTTTTGGATGTTCCTCGAACGGTATTCCTCCCTTCCTTGAAAACTTTGCAACTTGAACGTTTGAGATACTCAGATGAAGATTCTCTTCGCCTGCTTCTATCCTACTGCCCTGTTCTGGAAGATCTGAGTATTGTACGAGAAGACTATGACAATTTGAGAGCGTTAGTTGTTATTGTCCCATCCTTGCAGCGTTTATCCTTAGAGATACCTGGTAATTGTTCTTCTGATGGGTATGTGATAGTTACTCCTTCTTTGAAGTATTTCAAAGTTGTGGATTATAGAGAAAGTATGTCCTATTTGATTGAGCAAATGCCAGAGCTGGAAGAGGCAGATATTGTTGTTCTGCAGTATCCCGAGAAGCTTCTCGAATCAGTTACATTTTTCAAACGCCTTTCTATACGCGTAATATTCAACACTTATACAGAGGTCATCTGCTTTCATGTCATGTTTCCTACCTCATATTTTTTACTTAAAGACACAAAATCGGATTTCTTGAGCTTGAATCCTTTTTTATTGTGTTGTCATGTGTGCAGACTGTGTATCGTGATGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005938 GO:0006810 GO:0006888 GO:0006890 GO:0006996 GO:0007029 GO:0007154 GO:0007267 GO:0007268 GO:0007274 GO:0007528 GO:0008150 GO:0009987 GO:0010256 GO:0010638 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0019904 GO:0023052 GO:0031201 GO:0031594 GO:0031984 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0033043 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045202 GO:0046907 GO:0048193 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050808 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0060628 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0071944 GO:0090158 GO:0098796 GO:0098827 GO:0098916 GO:0099536 GO:0099537 GO:0099568 GO:1902115 GO:1902117 GO:1902953 GO:1903358

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

284

Amino Acids

32.72

Weight (kDa)

6.45

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	46 - 290	4.2e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	52 - 188	1.7e-15	FBD-associated F-box protein At5g56370, LRR repeats
LRR_2	PF07723	112 - 137	9.5e-07	Leucine Rich Repeat
FBD	PF08387	307 - 350	2.2e-18	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica	MD10G1316000.v1.1
prunus_persica	Prupe.4G024600_v2.0.a1
pyrus_communis	pycom10g26820
rosa_chinensis	RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata	RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora	Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa	Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha	Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana	Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	1 cut(s)	702
AclI	AACGTT	1 cut(s)	358
AclWI	GGATC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	700
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 287, 319
AluBI	AGCT	6 cut(s)	95, 199, 227, 619, 661, 798
AluI	AGCT	6 cut(s)	95, 199, 227, 619, 661, 798
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	2 cut(s)	47, 230
Ama87I	CYCGRG	2 cut(s)	17, 653
ApeKI	GCWGC	2 cut(s)	227, 487
Asp700I	GAANNNNTTC	1 cut(s)	560
AvaI	CYCGRG	2 cut(s)	17, 653
AxyI	CCTNAGG	2 cut(s)	56, 147
BarI	GAAGNNNNNNTAC	2 cut(s)	505, 537
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	214, 499
BccI	CCATC	4 cut(s)	29, 487, 521, 841
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	660
BfmI	CTRYAG	1 cut(s)	644
BfuAI	ACCTGC	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	660
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	2 cut(s)	228, 488
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	2 cut(s)	229, 489
Bme1390I	CCNGG	1 cut(s)	510
BmeT110I	CYCGRG	2 cut(s)	17, 653
BmrFI	CCNGG	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	814
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	243
Bse21I	CCTNAGG	2 cut(s)	56, 147
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	313, 479
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	47, 384, 416
BseNI	ACTGG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	214, 499
BsgI	GTGCAG	1 cut(s)	850
Bsh1236I	CGCG	1 cut(s)	702
BsiHKCI	CYCGRG	2 cut(s)	17, 653
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	461
BsoBI	CYCGRG	2 cut(s)	17, 653
Bsp143I	GATC	2 cut(s)	134, 421
Bsp1720I	GCTNAGC	1 cut(s)	200
BspCNI	CTCAG	3 cut(s)	48, 383, 417
BspFNI	CGCG	1 cut(s)	702
BspMAI	CTGCAG	1 cut(s)	648
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	134, 421
BssNAI	GTATAC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	290, 322, 837
Bst6I	CTCTTC	2 cut(s)	390, 618
BstC8I	GCNNGC	3 cut(s)	52, 113, 392
BstDEI	CTNAG	6 cut(s)	56, 147, 200, 370, 425, 499
BstF5I	GGATG	2 cut(s)	313, 479
BstFNI	CGCG	1 cut(s)	702
BstKTI	GATC	2 cut(s)	137, 424
BstMBI	GATC	2 cut(s)	134, 421
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	644
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	214, 499
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BstZ17I	GTATAC	1 cut(s)	255
Bsu36I	CCTNAGG	2 cut(s)	56, 147
BsuI	GTATCC	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	313, 479
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	52, 113, 392
CaiI	CAGNNNCTG	2 cut(s)	47, 230
CsiI	ACCWGGT	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	5 cut(s)	51, 215, 740, 745, 824
CviJI	RGCY	7 cut(s)	95, 111, 199, 227, 619, 661, 798
CviKI_1	RGCY	7 cut(s)	95, 111, 199, 227, 619, 661, 798
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	6 cut(s)	56, 147, 200, 370, 425, 499
DpnI	GATC	2 cut(s)	136, 423
DpnII	GATC	2 cut(s)	134, 421
Eam1104I	CTCTTC	2 cut(s)	390, 618
EarI	CTCTTC	2 cut(s)	390, 618
Eco81I	CCTNAGG	2 cut(s)	56, 147
Eco88I	CYCGRG	2 cut(s)	17, 653
EcoRII	CCWGG	1 cut(s)	508
FaeI	CATG	5 cut(s)	54, 218, 743, 748, 827
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	5 cut(s)	50, 214, 739, 744, 823
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	2 cut(s)	228, 488
FokI	GGATG	2 cut(s)	320, 466
Fsp4HI	GCNGC	2 cut(s)	228, 488
GluI	GCNGC	2 cut(s)	228, 488
Hin1II	CATG	5 cut(s)	54, 218, 743, 748, 827
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	5 cut(s)	44, 76, 380, 668, 802
Hpy166II	GTNNAC	2 cut(s)	212, 255
Hpy188I	TCNGA	5 cut(s)	43, 373, 426, 526, 787
Hpy188III	TCNNGA	6 cut(s)	271, 416, 653, 665, 793, 844
Hpy8I	GTNNAC	2 cut(s)	212, 255
HpyAV	CCTTC	3 cut(s)	289, 342, 558
HpyCH4III	ACNGT	3 cut(s)	290, 322, 837
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	7 cut(s)	50, 176, 261, 349, 487, 646, 831
HpyF3I	CTNAG	6 cut(s)	56, 147, 200, 370, 425, 499
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	5 cut(s)	54, 218, 743, 748, 827
Kzo9I	GATC	2 cut(s)	134, 421
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	214, 499
LweI	GCATC	1 cut(s)	213
MabI	ACCWGGT	1 cut(s)	508
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	3 cut(s)	271, 541, 673
MalI	GATC	2 cut(s)	136, 423
MboI	GATC	2 cut(s)	134, 421
MboII	GAAGA	6 cut(s)	377, 389, 431, 452, 513, 635
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	3 cut(s)	171, 451, 514
MluI	ACGCGT	1 cut(s)	700
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	51, 324, 338, 619, 718, 766
MroXI	GAANNNNTTC	1 cut(s)	560
MseI	TTAA	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	702
NdeII	GATC	2 cut(s)	134, 421
NlaIII	CATG	5 cut(s)	54, 218, 743, 748, 827
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	4 cut(s)	76, 380, 668, 802
PkrI	GCNGC	2 cut(s)	229, 489
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp1406I	AACGTT	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspXI	VCTCGAGB	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	648
PstNI	CAGNNNCTG	2 cut(s)	47, 230
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	2 cut(s)	228, 488
Sau3AI	GATC	2 cut(s)	134, 421
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	510
SexAI	ACCWGGT	1 cut(s)	508
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	644
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	17, 793
SmoI	CTYRAG	2 cut(s)	17, 793
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	171, 451, 514
SspI	AATATT	1 cut(s)	708
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	290, 322, 837
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	18, 316, 666
TasI	AATT	3 cut(s)	171, 451, 514
TfiI	GAWTC	4 cut(s)	76, 380, 668, 802
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	227, 487
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	390, 728
XceI	RCATGY	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.