AT3G10750

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Forward (+)
3366927 .. 3368791
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10750.1

Sequence Viewer

Length: 900 bp
ATGATTTTGTCGAAACGATGGCGTTTTCTCTGGACGATGTTGCCTAAACTCGAGTACACAGAAAGCAACGAAGGCGGAAAGAGTATTTGGGACTTGCTAGAAAAGTCATTGCAACTACACAAGGCACCTTCAGTAGAAAGCTTGCGTATCATGCTTGGTCCACAATGTCCTGTTGATGTAGATGTCGGAAAGTGGGTCTCGAATGCAGTTGACCGGTACGTTAGAGAGCTAACCCTAAGTCTTAGTTTTCTCTCAGATCCTGCCAGTAAGAGGCTTTACACCAGCAAAACGCTTGTGAAATTGAATCTTATGGGCAAGATTCTTGTTGATGTTCCTTCCGCGGCTTGCCTCCCGTCCCTTCAATCGCTGCTCCTTGTCAATGTGGTGTATAAAGACCAAGATTCTCATGTTAGGCTTTTATTGAGTTGCCCTGTTCTCAGATATTTGTTGGTGATCCGAAATAAGAGTGACAATGTGACAAGGTTCATTGATTCGCAATCACTTGAAAAAAATGGTTCTGGTAGGTCATTGGTTATAGATTCCCCGGGATTAAATTACCTTAGCATCATTGACTCTTTAGGAGGCAATTTCTCCATCCAGAATATGCCATGCCTTGAAAAGGCCATCGTTTCCCTCTGTGGTTTTTACCCGAATGACAAGTTTCTGACATCTTTCTCCTCTGTCAAAATTCTTCCTTCTCAGCCTTTTATTGATCATGTTCCACTTTCTTGGAACCAACCAAGTTCTGTACCGCGATGCGTGTTGTCTCACCTTGAGATCTTGGAGTGGAAACTCTTTGAAGGAAGGAGAGAAGAGAAACAACTTCTGGCTTACATCCTCGAAAACTCTGAAGTCTTTGAAGACGGTGGAAATCTCACTGATACCTTTCACGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

299

Amino Acids

33.81

Weight (kDa)

6.53

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 63 - 212 7e-10 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 246 - 285 2.6e-17 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccII CGCG 2 cut(s) 341, 754
AciI CCGC 4 cut(s) 75, 339, 341, 752
AclWI GGATC 2 cut(s) 251, 448
AcsI RAATTY 1 cut(s) 687
AcuI CTGAAG 2 cut(s) 114, 870
AfaI GTAC 3 cut(s) 56, 218, 750
AfiI CCNNNNNNNGG 2 cut(s) 270, 619
AgeI ACCGGT 1 cut(s) 213
AgsI TTSAA 6 cut(s) 304, 362, 506, 617, 800, 860
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 2 cut(s) 141, 229
AluI AGCT 2 cut(s) 141, 229
Alw26I GTCTC 2 cut(s) 202, 771
AlwI GGATC 2 cut(s) 251, 448
AlwNI CAGNNNCTG 1 cut(s) 260
Ama87I CYCGRG 2 cut(s) 50, 544
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 687
AsiGI ACCGGT 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 2 cut(s) 545, 546
AsuHPI GGTGA 2 cut(s) 463, 761
AvaI CYCGRG 2 cut(s) 50, 544
AvaII GGWCC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 867
BbvI GCAGC 1 cut(s) 354
BccI CCATC 3 cut(s) 12, 602, 632
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 2 cut(s) 545, 546
BcoDI GTCTC 2 cut(s) 202, 771
BfaI CTAG 1 cut(s) 98
BglII AGATCT 1 cut(s) 777
BisI GCNGC 2 cut(s) 342, 368
BlsI GCNGC 2 cut(s) 343, 369
Bme1390I CCNGG 2 cut(s) 545, 546
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 2 cut(s) 50, 544
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 126, 734
BmrFI CCNGG 2 cut(s) 545, 546
BmsI GCATC 2 cut(s) 573, 746
BpiI GAAGAC 1 cut(s) 867
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 2 cut(s) 545, 546
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 339, 543, 544
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 619
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 107
BseDI CCNNGG 3 cut(s) 339, 543, 544
BseGI GGATG 2 cut(s) 594, 834
BseLI CCNNNNNNNGG 2 cut(s) 270, 619
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 3 cut(s) 267, 451, 713
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 667
BseXI GCAGC 1 cut(s) 354
Bsh1236I CGCG 2 cut(s) 341, 754
BshFI GGCC 1 cut(s) 623
BshNI GGYRCC 1 cut(s) 124
BshTI ACCGGT 1 cut(s) 213
BsiHKCI CYCGRG 2 cut(s) 50, 544
BsiSI CCGG 2 cut(s) 214, 545
BslFI GGGAC 2 cut(s) 104, 340
BslI CCNNNNNNNGG 2 cut(s) 270, 619
BsmAI GTCTC 2 cut(s) 202, 771
BsmFI GGGAC 2 cut(s) 104, 340
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 623
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 2 cut(s) 50, 544
Bsp143I GATC 4 cut(s) 256, 453, 712, 777
BspACI CCGC 4 cut(s) 75, 339, 341, 752
BspANI GGCC 1 cut(s) 623
BspCNI CTCAG 3 cut(s) 266, 450, 712
BspFNI CGCG 2 cut(s) 341, 754
BspLI GGNNCC 2 cut(s) 126, 734
BspPI GGATC 2 cut(s) 251, 448
BspT107I GGYRCC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 3 cut(s) 339, 543, 544
BssMI GATC 4 cut(s) 256, 453, 712, 777
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 1 cut(s) 807
BstC8I GCNNGC 2 cut(s) 143, 346
BstDEI CTNAG 6 cut(s) 236, 242, 253, 437, 560, 699
BstDSI CCRYGG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 2 cut(s) 594, 834
BstFNI CGCG 2 cut(s) 341, 754
BstKTI GATC 4 cut(s) 259, 456, 715, 780
BstMAI GTCTC 2 cut(s) 202, 771
BstMBI GATC 4 cut(s) 256, 453, 712, 777
BstMWI GCNNNNNNNGC 2 cut(s) 72, 151
BstSCI CCNGG 2 cut(s) 543, 544
BstUI CGCG 2 cut(s) 341, 754
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 867
BstX2I RGATCY 2 cut(s) 256, 777
BstXI CCANNNNNNTGG 1 cut(s) 729
BstYI RGATCY 2 cut(s) 256, 777
BsuRI GGCC 1 cut(s) 623
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 769
BtsCI GGATG 2 cut(s) 594, 834
BtsIMutI CAGTG 1 cut(s) 876
Cac8I GCNNGC 2 cut(s) 143, 346
CaiI CAGNNNCTG 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 158
Cfr42I CCGCGG 1 cut(s) 342
Cfr9I CCCGGG 1 cut(s) 544
Csp6I GTAC 3 cut(s) 55, 217, 749
CspAI ACCGGT 1 cut(s) 213
CviAII CATG 4 cut(s) 151, 407, 609, 716
CviJI RGCY 8 cut(s) 141, 229, 274, 344, 415, 623, 703, 830
CviKI_1 RGCY 8 cut(s) 141, 229, 274, 344, 415, 623, 703, 830
CviQI GTAC 3 cut(s) 55, 217, 749
DdeI CTNAG 6 cut(s) 236, 242, 253, 437, 560, 699
DpnI GATC 4 cut(s) 258, 455, 714, 779
DpnII GATC 4 cut(s) 256, 453, 712, 777
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
EciI GGCGGA 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 2 cut(s) 114, 870
Eco88I CYCGRG 2 cut(s) 50, 544
EcoNI CCTNNNNNAGG 1 cut(s) 617
FaeI CATG 4 cut(s) 154, 410, 612, 719
FaiI YATR 8 cut(s) 152, 311, 390, 408, 536, 605, 610, 717
FaqI GGGAC 2 cut(s) 104, 340
FatI CATG 4 cut(s) 150, 406, 608, 715
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 2 cut(s) 342, 368
FokI GGATG 2 cut(s) 581, 821
Fsp4HI GCNGC 2 cut(s) 342, 368
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 342, 368
HaeIII GGCC 1 cut(s) 623
HapII CCGG 2 cut(s) 214, 545
Hin1II CATG 4 cut(s) 154, 410, 612, 719
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 6 cut(s) 304, 319, 401, 491, 539, 572
HpaII CCGG 2 cut(s) 214, 545
HphI GGTGA 2 cut(s) 463, 761
Hpy166II GTNNAC 3 cut(s) 57, 161, 211
Hpy188I TCNGA 6 cut(s) 188, 256, 440, 458, 666, 850
Hpy188III TCNNGA 4 cut(s) 31, 199, 598, 890
Hpy8I GTNNAC 3 cut(s) 57, 161, 211
HpyAV CCTTC 7 cut(s) 65, 138, 345, 368, 705, 794, 798
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 112, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 151
HpyF3I CTNAG 6 cut(s) 236, 242, 253, 437, 560, 699
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 4 cut(s) 154, 410, 612, 719
Ksp22I TGATCA 1 cut(s) 712
KspI CCGCGG 1 cut(s) 342
Kzo9I GATC 4 cut(s) 256, 453, 712, 777
LmnI GCTCC 1 cut(s) 375
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 2 cut(s) 573, 746
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 467, 475
MalI GATC 4 cut(s) 258, 455, 714, 779
MboI GATC 4 cut(s) 256, 453, 712, 777
MboII GAAGA 3 cut(s) 683, 824, 872
MflI RGATCY 2 cut(s) 256, 777
MluCI AATT 4 cut(s) 299, 553, 586, 687
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 6 cut(s) 264, 359, 575, 644, 688, 848
MseI TTAA 1 cut(s) 551
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 214, 545
MspR9I CCNGG 2 cut(s) 545, 546
Mva1269I GAATGC 1 cut(s) 208
MvnI CGCG 2 cut(s) 341, 754
MwoI GCNNNNNNNGC 2 cut(s) 72, 151
NciI CCSGG 2 cut(s) 545, 546
NdeII GATC 4 cut(s) 256, 453, 712, 777
NlaIII CATG 4 cut(s) 154, 410, 612, 719
NlaIV GGNNCC 2 cut(s) 126, 734
NmuCI GTSAC 2 cut(s) 467, 475
PaeR7I CTCGAG 1 cut(s) 50
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 5 cut(s) 304, 319, 401, 491, 539
PinAI ACCGGT 1 cut(s) 213
PkrI GCNGC 2 cut(s) 343, 369
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PspN4I GGNNCC 2 cut(s) 126, 734
PspPI GGNCC 1 cut(s) 158
PspXI VCTCGAGB 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 2 cut(s) 256, 777
RsaI GTAC 3 cut(s) 56, 218, 750
RsaNI GTAC 3 cut(s) 55, 217, 749
SacII CCGCGG 1 cut(s) 342
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 2 cut(s) 342, 368
Sau3AI GATC 4 cut(s) 256, 453, 712, 777
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 545, 546
SetI ASST 9 cut(s) 130, 143, 222, 231, 485, 527, 561, 774, 887
SfaNI GCATC 2 cut(s) 573, 746
Sfr274I CTCGAG 1 cut(s) 50
Sfr303I CCGCGG 1 cut(s) 342
SgrBI CCGCGG 1 cut(s) 342
SinI GGWCC 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 50
SmaI CCCGGG 1 cut(s) 546
SmlI CTYRAG 2 cut(s) 50, 773
SmoI CTYRAG 2 cut(s) 50, 773
Sse9I AATT 4 cut(s) 299, 553, 586, 687
SsiI CCGC 4 cut(s) 75, 339, 341, 752
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 543, 544
TaaI ACNGT 1 cut(s) 866
TaiI ACGT 1 cut(s) 222
TaqI TCGA 4 cut(s) 11, 51, 200, 840
TasI AATT 4 cut(s) 299, 553, 586, 687
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 5 cut(s) 304, 319, 401, 491, 539
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 1 cut(s) 883
TseFI GTSAC 2 cut(s) 467, 475
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 2 cut(s) 467, 475
TspDTI ATGAA 1 cut(s) 475
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 1 cut(s) 883
VpaK11BI GGWCC 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 1 cut(s) 687
XhoI CTCGAG 1 cut(s) 50
XmaI CCCGGG 1 cut(s) 544
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.