AT5G56452

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Reverse (-)
22860450 .. 22861818
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56452.1

Sequence Viewer

Length: 684 bp
ATGCTAGAAACGACGACGACTATATGTCATCGTGGTTCTATAATGAAATTTGATATTTTTAACCCAATAAAATACGGCAATATGATTGTGATTAATGTCCCATCTCTGAAGTACTTGAGCTTAGTAGATTTCAATGGTGACTCTTATTTGTGTGAGAATATGCCTGAGGTGATTGAGGCAATTGTTAAAGTTGTTCATAAAAGTCCCATGAAGCTACTGGGATCTCTTCCATCAGTCAAGAATCTCTATTTATGTCTAACTAATTCAGTGCTTCAACACCAAATAGGGATTTATCATCTTGTCCATTTGGAGCTATGTCAAGACTCTCCAGGGTGGTGGGGTCTGCTTACTTGGATGCTTGATAATTCTCCTAAACTACAAGTTCTCAAGCTCGGAAAGTGCAAAGAACGTTGTTTCATATCGTCCATTGAAAGTCACTGGAGAGGACCAATTTCAGTTCCAGAATGTTTGCGGTTACATCTGTCTACTTTTGAGTGGAAATATTACAATGGAAGAGATGAGGAGAAGAAAATAGTGGCGTACATCCTAAAGAATGCAAGACAGCTAAAGACTGCGGCTTTCTCTGTTCAAAGAGTGTTTCCCATGAAAGAGAGATTTCAGAAACATAAGGAGGTTGTTTCTCTGCATAGAGCTTCAAGCTCATGTAAACTTATGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FBD LRR_2

Protein Analysis

227

Amino Acids

26.21

Weight (kDa)

9.14

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 150 - 194 9.7e-19 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 485
AciI CCGC 2 cut(s) 472, 575
AclI AACGTT 1 cut(s) 409
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 2 cut(s) 113, 542
AgsI TTSAA 5 cut(s) 133, 275, 431, 590, 657
AhdI GACNNNNNGTC 1 cut(s) 24
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 7 cut(s) 120, 214, 313, 391, 565, 653, 660
AluI AGCT 7 cut(s) 120, 214, 313, 391, 565, 653, 660
AlwI GGATC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 47
AseI ATTAAT 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 2 cut(s) 149, 181
AvaII GGWCC 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 165
BccI CCATC 2 cut(s) 109, 238
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 330
BfaI CTAG 1 cut(s) 5
BisI GCNGC 1 cut(s) 576
BlsI GCNGC 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 446
BmeRI GACNNNNNGTC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 446
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 227
BpmI CTGGAG 2 cut(s) 312, 460
BpuEI CTTGAG 2 cut(s) 136, 371
BsaJI CCNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 222, 443
Bse21I CCTNAGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 2 cut(s) 360, 543
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 222, 443
BseRI GAGGAG 1 cut(s) 536
BslFI GGGAC 2 cut(s) 83, 189
BsmFI GGGAC 2 cut(s) 83, 189
BsmI GAATGC 1 cut(s) 559
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 2 cut(s) 472, 575
BspCNI CTCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 229
BsrI ACTGG 2 cut(s) 222, 443
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 330
Bst6I CTCTTC 2 cut(s) 231, 508
BstDEI CTNAG 2 cut(s) 121, 165
BstF5I GGATG 2 cut(s) 360, 543
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 1 cut(s) 221
Bsu36I CCTNAGG 1 cut(s) 165
BtsCI GGATG 2 cut(s) 360, 543
BtsIMutI CAGTG 2 cut(s) 273, 436
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 112, 541
CviAII CATG 3 cut(s) 208, 604, 663
CviJI RGCY 8 cut(s) 120, 214, 313, 391, 565, 578, 653, 660
CviKI_1 RGCY 8 cut(s) 120, 214, 313, 391, 565, 578, 653, 660
CviQI GTAC 2 cut(s) 112, 541
DdeI CTNAG 2 cut(s) 121, 165
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
DriI GACNNNNNGTC 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 231, 508
Eam1105I GACNNNNNGTC 1 cut(s) 24
EarI CTCTTC 2 cut(s) 231, 508
Eco47I GGWCC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 3 cut(s) 211, 607, 666
FaqI GGGAC 2 cut(s) 83, 189
FatI CATG 3 cut(s) 207, 603, 662
FblI GTMKAC 1 cut(s) 485
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 2 cut(s) 367, 530
Fsp4HI GCNGC 1 cut(s) 576
FspBI CTAG 1 cut(s) 5
GluI GCNGC 1 cut(s) 576
GsuI CTGGAG 2 cut(s) 312, 460
Hin1II CATG 3 cut(s) 211, 607, 666
HinfI GANTC 3 cut(s) 140, 241, 323
HphI GGTGA 2 cut(s) 149, 181
Hpy166II GTNNAC 2 cut(s) 486, 668
Hpy188I TCNGA 3 cut(s) 108, 395, 621
Hpy188III TCNNGA 3 cut(s) 238, 320, 461
Hpy8I GTNNAC 2 cut(s) 486, 668
Hpy99I CGWCG 2 cut(s) 16, 19
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 3 cut(s) 402, 557, 646
HpyF3I CTNAG 2 cut(s) 121, 165
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 3 cut(s) 211, 607, 666
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 6 cut(s) 177, 203, 315, 342, 424, 474
LweI GCATC 1 cut(s) 345
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 3 cut(s) 137, 434, 474
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 3 cut(s) 218, 525, 538
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 1 cut(s) 221
MluCI AATT 5 cut(s) 47, 180, 262, 364, 450
MlyI GAGTC 2 cut(s) 134, 317
MmeI TCCRAC 1 cut(s) 657
MnlI CCTC 5 cut(s) 160, 169, 437, 514, 625
MseI TTAA 3 cut(s) 60, 93, 186
MspR9I CCNGG 1 cut(s) 330
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 330
NdeII GATC 1 cut(s) 221
NlaIII CATG 3 cut(s) 211, 607, 666
NmuCI GTSAC 2 cut(s) 137, 434
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 577
PleI GAGTC 2 cut(s) 134, 317
PpsI GAGTC 2 cut(s) 134, 317
PshBI ATTAAT 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspPI GGNCC 1 cut(s) 446
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 2 cut(s) 113, 542
RsaNI GTAC 2 cut(s) 112, 541
SaqAI TTAA 3 cut(s) 60, 93, 186
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 446
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 2 cut(s) 134, 317
ScrFI CCNGG 1 cut(s) 330
SfaNI GCATC 1 cut(s) 345
SinI GGWCC 1 cut(s) 446
SmlI CTYRAG 2 cut(s) 115, 386
SmoI CTYRAG 2 cut(s) 115, 386
Sse9I AATT 5 cut(s) 47, 180, 262, 364, 450
SsiI CCGC 2 cut(s) 472, 575
SspI AATATT 1 cut(s) 503
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 328
TaiI ACGT 1 cut(s) 412
TasI AATT 5 cut(s) 47, 180, 262, 364, 450
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 3 cut(s) 60, 93, 186
Tru9I TTAA 3 cut(s) 60, 93, 186
TscAI CASTG 2 cut(s) 273, 443
TseFI GTSAC 2 cut(s) 137, 434
Tsp45I GTSAC 2 cut(s) 137, 434
TspDTI ATGAA 5 cut(s) 59, 185, 224, 406, 620
TspRI CASTG 2 cut(s) 273, 443
VpaK11BI GGWCC 1 cut(s) 446
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 485
XspI CTAG 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.