AT1G19410

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000140
Physical Location & Seq
Reverse (-)
6714492 .. 6716439
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19410.1

Sequence Viewer

Length: 1308 bp
ATGGAAAAGATCAATACTGATGACTTGCTGGTGAAGATTTTATCATTTCTTCCAACAAAAGTTGCTGTGACCACTAGCATTTTGTCTAAACGTGGAAGTTTCTTTGGTTGCGGGACATTGCCGCTACATAGAGTTCCGGTTTTGGAAAGCTTGCCTCTCAAGTTTAGTACTTTACCATTTCAACCAGAAGATATCAAACTATGCGTTGAAGCTGCAGTTTCTCACTGTGTGCGGGAGCTTTTCATTGATTATTATCCTCATCCATACAAATTTGCTACATTGCCATTTTGCGTGTACACCTGCAAATCGCTCGAGACCCTTGCACTCTCTTATGCAATTCTCATGGTTGTTCCTCGTATGGCTTGTCTTCCATCTCTGAAAAACTTGCTACTACAAGGAGTGAGATACGTAGATGAATCTTTTCAACTACTCGATGAATCTCATACGGTTTGTTTTCCCTCCCTGAAATCTTTGCACCTTAAAGAAGTAATCTCCTCCGATGAAAGATATCTTCGATCGCTTCTTGCCAATTGCCCTGTTCTTGAAGAATTGGTCATGGAACTAGATGAATATGATACTTTGGGAGCTGTCCACATCATTGTACCGTCTTTGAAGAGTTTATCATTAGATATAGATTGTGATCGTTCTTCCAATGTAGTTGAAATTGTCGCTCCTTCTTTGGAGTACATCAAACTAAATGATCACAGCGACAATAAATTCTTGATAGAGAATATGCCTAAGCTTGAAGAGGCATACATTGATGCTAATATCTTTGAATATGAGAAATTTCTTGGAGCTTTCACATCTGTTAAGCGTCTAAGGGCATCTCCATCAATAGTATCTGGGAGAATATCTGGAGATGGTCTAAACTTGTGCTTAATGCTCCAAAGATCCGAGGCTAGGAATGTTTCTGCAATTTGCTTCAATCAACTTGAAAGTCTAAAGATATGTACTTGTAAACCATATTGGTCGATAATACTTCTCCGGTTGCTCAAAGGATCTCCTAATCTAAAAGTCCTTGAGCTCACAGACAATAAAATGCCATTGTGTTTTAAGGATCCACTGGTTTGCTGGGATCAAGTGACACCTGTGCCTGAATGTTTGCTGACTAGTCTAGAGACTTTCAAGTGGACAGACTTACCACCAAGACAAGAAGCGAGAGATATGCGAACAGTTTTGGTTCTGAAAAACGAAATGGTAAAACTTTTAGACGATAAGATCGTTAGGTCAGAAAGAAAAGAACACATCATCTTCTTCTTTGCAATCACTGTTTCTGATATTTATGTTTCTTCCTCTTCGTCACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

435

Amino Acids

49.3

Weight (kDa)

5.74

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 148 - 249 8.6e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 308
AciI CCGC 3 cut(s) 111, 122, 232
AclWI GGATC 5 cut(s) 885, 1006, 1052, 1065, 1083
AcsI RAATTY 3 cut(s) 269, 716, 785
AdeI CACNNNGTG 1 cut(s) 229
AfaI GTAC 5 cut(s) 169, 296, 603, 686, 952
AfiI CCNNNNNNNGG 1 cut(s) 900
AhlI ACTAGT 1 cut(s) 1109
AluBI AGCT 7 cut(s) 150, 212, 238, 587, 742, 797, 1024
AluI AGCT 7 cut(s) 150, 212, 238, 587, 742, 797, 1024
Alw21I GWGCWC 1 cut(s) 1026
Alw26I GTCTC 2 cut(s) 308, 1112
AlwI GGATC 5 cut(s) 885, 1006, 1052, 1065, 1083
Ama87I CYCGRG 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 3 cut(s) 269, 716, 785
Asp700I GAANNNNTTC 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 43, 1293
AvaI CYCGRG 1 cut(s) 311
BamHI GGATCC 1 cut(s) 1057
BanII GRGCYC 1 cut(s) 1026
BbsI GAAGAC 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 1026
BbvI GCAGC 1 cut(s) 199
BccI CCATC 3 cut(s) 379, 838, 854
BcgI CGANNNNNNTGC 6 cut(s) 292, 302, 326, 336, 1147, 1181
BclI TGATCA 1 cut(s) 700
BcoDI GTCTC 2 cut(s) 308, 1112
BcuI ACTAGT 1 cut(s) 1109
BfaI CTAG 5 cut(s) 75, 563, 900, 1110, 1115
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 2 cut(s) 122, 213
BlsI GCNGC 2 cut(s) 123, 214
BmcAI AGTACT 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 1059
BmsI GCATC 2 cut(s) 751, 833
BpiI GAAGAC 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 876
Bpu10I CCTNAGC 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 143, 1040
BsaAI YACGTR 1 cut(s) 409
BsaBI GATNNNNATC 2 cut(s) 252, 639
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 894
BsaWI WCCGGW 2 cut(s) 136, 984
Bsc4I CCNNNNNNNGG 1 cut(s) 900
Bse1I ACTGG 1 cut(s) 1068
Bse3DI GCAATG 2 cut(s) 116, 278
Bse8I GATNNNNATC 2 cut(s) 252, 639
BseDI CCNNGG 1 cut(s) 894
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 2 cut(s) 252, 639
BseLI CCNNNNNNNGG 1 cut(s) 900
BseMI GCAATG 2 cut(s) 116, 278
BseNI ACTGG 1 cut(s) 1068
BseRI GAGGAG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 1071
Bsh1285I CGRYCG 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 1026
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 137, 985
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 900
BsmAI GTCTC 2 cut(s) 308, 1112
BsmFI GGGAC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 1026
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 9 cut(s) 9, 515, 640, 700, 890, 998, 1057, 1075, 1218
BspACI CCGC 3 cut(s) 111, 122, 232
BspLI GGNNCC 1 cut(s) 1059
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 5 cut(s) 885, 1006, 1052, 1065, 1083
BspTNI GGTCTC 1 cut(s) 308
BsrDI GCAATG 2 cut(s) 116, 278
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 1068
BssECI CCNNGG 1 cut(s) 894
BssMI GATC 9 cut(s) 9, 515, 640, 700, 890, 998, 1057, 1075, 1218
Bst4CI ACNGT 6 cut(s) 227, 448, 606, 1174, 1270, 1305
Bst6I CTCTTC 3 cut(s) 608, 741, 1300
BstAUI TGTACA 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 738, 818
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 9 cut(s) 12, 518, 643, 703, 893, 1001, 1060, 1078, 1221
BstMAI GTCTC 2 cut(s) 308, 1112
BstMBI GATC 9 cut(s) 9, 515, 640, 700, 890, 998, 1057, 1075, 1218
BstMCI CGRYCG 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 213
BstSNI TACGTA 1 cut(s) 409
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 3 cut(s) 890, 998, 1057
BstYI RGATCY 3 cut(s) 890, 998, 1057
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 3 cut(s) 223, 1061, 1266
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 152
CseI GACGC 1 cut(s) 803
Csp6I GTAC 5 cut(s) 168, 295, 602, 685, 951
CviAII CATG 2 cut(s) 343, 556
CviJI RGCY 9 cut(s) 150, 212, 238, 362, 587, 742, 797, 899, 1024
CviKI_1 RGCY 9 cut(s) 150, 212, 238, 362, 587, 742, 797, 899, 1024
CviQI GTAC 5 cut(s) 168, 295, 602, 685, 951
DdeI CTNAG 2 cut(s) 738, 818
DpnI GATC 9 cut(s) 11, 517, 642, 702, 892, 1000, 1059, 1077, 1220
DpnII GATC 9 cut(s) 9, 515, 640, 700, 890, 998, 1057, 1075, 1218
DraIII CACNNNGTG 1 cut(s) 229
Eam1104I CTCTTC 3 cut(s) 608, 741, 1300
EarI CTCTTC 3 cut(s) 608, 741, 1300
Ecl136II GAGCTC 1 cut(s) 1024
Eco105I TACGTA 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 1026
Eco31I GGTCTC 1 cut(s) 308
Eco32I GATATC 2 cut(s) 193, 509
Eco53kI GAGCTC 1 cut(s) 1024
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 1024
EcoRV GATATC 2 cut(s) 193, 509
EcoT38I GRGCYC 1 cut(s) 1026
FaeI CATG 2 cut(s) 346, 559
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 342, 555
FauI CCCGC 2 cut(s) 104, 225
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 2 cut(s) 122, 213
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 2 cut(s) 122, 213
FspBI CTAG 5 cut(s) 75, 563, 900, 1110, 1115
GluI GCNGC 2 cut(s) 122, 213
GsaI CCCAGC 1 cut(s) 1075
GsuI CTGGAG 1 cut(s) 876
HapII CCGG 2 cut(s) 137, 985
HgaI GACGC 1 cut(s) 803
Hin1II CATG 2 cut(s) 346, 559
HindIII AAGCTT 2 cut(s) 148, 740
HinfI GANTC 2 cut(s) 416, 437
HpaII CCGG 2 cut(s) 137, 985
HphI GGTGA 2 cut(s) 43, 1293
Hpy166II GTNNAC 5 cut(s) 295, 297, 592, 959, 1131
Hpy188I TCNGA 6 cut(s) 378, 499, 895, 1185, 1231, 1276
Hpy188III TCNNGA 5 cut(s) 313, 542, 721, 855, 1115
Hpy8I GTNNAC 5 cut(s) 295, 297, 592, 959, 1131
HpyAV CCTTC 1 cut(s) 684
HpyCH4III ACNGT 6 cut(s) 227, 448, 606, 1174, 1270, 1305
HpyCH4IV ACGT 2 cut(s) 91, 408
HpyCH4V TGCA 7 cut(s) 215, 303, 323, 335, 475, 914, 1262
HpyF3I CTNAG 2 cut(s) 738, 818
HpySE526I ACGT 2 cut(s) 91, 408
Hsp92II CATG 2 cut(s) 346, 559
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 9 cut(s) 9, 515, 640, 700, 890, 998, 1057, 1075, 1218
LmnI GCTCC 5 cut(s) 235, 584, 676, 794, 888
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 2 cut(s) 751, 833
MaeI CTAG 5 cut(s) 75, 563, 900, 1110, 1115
MaeII ACGT 2 cut(s) 91, 408
MaeIII GTNAC 3 cut(s) 67, 1081, 1299
MalI GATC 9 cut(s) 11, 517, 642, 702, 892, 1000, 1059, 1077, 1220
MboI GATC 9 cut(s) 9, 515, 640, 700, 890, 998, 1057, 1075, 1218
MfeI CAATTG 1 cut(s) 529
MflI RGATCY 3 cut(s) 890, 998, 1057
MhlI GDGCHC 1 cut(s) 1026
MluCI AATT 8 cut(s) 269, 336, 529, 548, 663, 716, 785, 915
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 8 cut(s) 165, 267, 363, 469, 505, 742, 889, 1303
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 4 cut(s) 480, 810, 878, 1053
MspI CCGG 2 cut(s) 137, 985
MunI CAATTG 1 cut(s) 529
NdeII GATC 9 cut(s) 9, 515, 640, 700, 890, 998, 1057, 1075, 1218
NlaIII CATG 2 cut(s) 346, 559
NlaIV GGNNCC 1 cut(s) 1059
NmuCI GTSAC 3 cut(s) 67, 1081, 1299
PaeR7I CTCGAG 1 cut(s) 311
PaqCI CACCTGC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 1218
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 416, 437
PkrI GCNGC 2 cut(s) 123, 214
Ple19I CGATCG 1 cut(s) 518
Ppu21I YACGTR 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 1026
PspFI CCCAGC 1 cut(s) 1071
PspN4I GGNNCC 1 cut(s) 1059
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 3 cut(s) 890, 998, 1057
PvuI CGATCG 1 cut(s) 518
RsaI GTAC 5 cut(s) 169, 296, 603, 686, 952
RsaNI GTAC 5 cut(s) 168, 295, 602, 685, 951
SacI GAGCTC 1 cut(s) 1026
SaqAI TTAA 4 cut(s) 480, 810, 878, 1053
SatI GCNGC 2 cut(s) 122, 213
Sau3AI GATC 9 cut(s) 9, 515, 640, 700, 890, 998, 1057, 1075, 1218
ScaI AGTACT 1 cut(s) 169
SduI GDGCHC 1 cut(s) 1026
SfaNI GCATC 2 cut(s) 751, 833
SfcI CTRYAG 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 3 cut(s) 158, 311, 1019
SmoI CTYRAG 3 cut(s) 158, 311, 1019
SnaBI TACGTA 1 cut(s) 409
SpeI ACTAGT 1 cut(s) 1109
Sse9I AATT 8 cut(s) 269, 336, 529, 548, 663, 716, 785, 915
SsiI CCGC 3 cut(s) 111, 122, 232
SspMI CTAG 5 cut(s) 75, 563, 900, 1110, 1115
SstI GAGCTC 1 cut(s) 1026
TaaI ACNGT 6 cut(s) 227, 448, 606, 1174, 1270, 1305
TaiI ACGT 2 cut(s) 94, 411
TaqI TCGA 4 cut(s) 312, 432, 514, 971
TasI AATT 8 cut(s) 269, 336, 529, 548, 663, 716, 785, 915
TatI WGTACW 4 cut(s) 167, 294, 684, 950
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 2 cut(s) 416, 437
Tru1I TTAA 4 cut(s) 480, 810, 878, 1053
Tru9I TTAA 4 cut(s) 480, 810, 878, 1053
TscAI CASTG 3 cut(s) 230, 1068, 1273
TseFI GTSAC 3 cut(s) 67, 1081, 1299
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 3 cut(s) 67, 1081, 1299
TspDTI ATGAA 5 cut(s) 232, 429, 450, 516, 582
TspRI CASTG 3 cut(s) 230, 1068, 1273
XapI RAATTY 3 cut(s) 269, 716, 785
XbaI TCTAGA 1 cut(s) 1114
XcmI CCANNNNNNNNNTGG 1 cut(s) 1068
XhoI CTCGAG 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 5 cut(s) 75, 563, 900, 1110, 1115
ZrmI AGTACT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.