AT3G55670

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Reverse (-)
20658013 .. 20659503
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55670.1

Sequence Viewer

Length: 657 bp
ATGAAATTGGAAAACCAGTCAGAAACAACTGCGAACATTCAGCTGAATGCGCCGGAGTTGGTTGAGGCAAATATCGCTGAAGTTACATCTATAACCATTGAGAAGTTTCTTGGATCTTTCACTTCAGTCACACGTCTGTTATTGAATTTATCACCCTTGAAGAATTTTCATAAAGATGGTTTGGTTAGCGGCAAATGGAATGAGCCAAAGGATGTCCCTGAATGTTTGTTGTCACAATTAGAGACATTTGTGTGGAGAAGATTGGATTGGGGAAGAGAAGAAGAGAAAGAAATAGCTACATATATTCTCAAGAACGGAAGACGGTTGAAGAAGGAAACTTTCACGACAAATCCCATTGAATCGGAAGGGCTCAATAAGTTGAAAGAGAGACTTAAGGTGCTCAACGGATTGGATGGTGTGCAAGCGCCTTTATTTAGGAAAGATGGTGTGGTTGTCGGGAAATGGAATCAACCAAAGAATGTTCCTCAATGTTTGTTGTCTCACCTCGAGACATTTGTGTGGACAAGATACCGTTGGGAAAGGGAAGAAGAGAAAGAAGAGGCTACATACATTCTGAAGAACGCAAGACTGTTGAGCAAGGCAACTTTCTCTACAAATATCATTGATTTAAAAGAGTTTCATTGGTTTAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

218

Amino Acids

25.39

Weight (kDa)

8.74

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 68 - 114 1.9e-18 FBD
FBD PF08387 157 - 203 1.5e-20 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 2 cut(s) 145, 163
AcuI CTGAAG 3 cut(s) 99, 108, 596
AflII CTTAAG 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 145, 160, 328, 359, 382
AjiI CACGTC 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 250, 282
AluBI AGCT 2 cut(s) 43, 296
AluI AGCT 2 cut(s) 43, 296
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 4 cut(s) 236, 382, 503, 504
AlwI GGATC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 506
ApoI RAATTY 2 cut(s) 145, 163
AspLEI GCGC 2 cut(s) 52, 427
AsuHPI GGTGA 2 cut(s) 144, 494
AvaI CYCGRG 1 cut(s) 506
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 402
BccI CCATC 3 cut(s) 170, 407, 437
BcoDI GTCTC 4 cut(s) 236, 382, 503, 504
BfoI RGCGCY 1 cut(s) 428
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 506
BmgBI CACGTC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 325
BpuEI CTTGAG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 16
BseGI GGATG 2 cut(s) 217, 418
BseNI ACTGG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 4 cut(s) 236, 382, 503, 504
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 372, 402
Bsp143I GATC 1 cut(s) 113
BspACI CCGC 1 cut(s) 189
BspPI GGATC 1 cut(s) 121
BspTI CTTAAG 1 cut(s) 392
BsrI ACTGG 1 cut(s) 16
BssMI GATC 1 cut(s) 113
Bst4CI ACNGT 3 cut(s) 324, 533, 591
Bst6I CTCTTC 4 cut(s) 268, 276, 543, 552
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 423
BstF5I GGATG 2 cut(s) 217, 418
BstH2I RGCGCY 1 cut(s) 428
BstHHI GCGC 2 cut(s) 52, 427
BstKTI GATC 1 cut(s) 116
BstMAI GTCTC 4 cut(s) 236, 382, 503, 504
BstMBI GATC 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 49, 74
BstV2I GAAGAC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 217, 418
Cac8I GCNNGC 1 cut(s) 423
CfoI GCGC 2 cut(s) 52, 427
CviJI RGCY 5 cut(s) 43, 205, 296, 370, 563
CviKI_1 RGCY 5 cut(s) 43, 205, 296, 370, 563
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
DraI TTTAAA 2 cut(s) 630, 649
Eam1104I CTCTTC 4 cut(s) 268, 276, 543, 552
EarI CTCTTC 4 cut(s) 268, 276, 543, 552
Eco24I GRGCYC 1 cut(s) 372
Eco57I CTGAAG 3 cut(s) 99, 108, 596
Eco88I CYCGRG 1 cut(s) 506
EcoT38I GRGCYC 1 cut(s) 372
FaiI YATR 5 cut(s) 92, 171, 301, 303, 568
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 2 cut(s) 224, 425
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 190
GlaI GCGC 2 cut(s) 51, 426
GluI GCNGC 1 cut(s) 190
HaeII RGCGCY 1 cut(s) 428
HapII CCGG 1 cut(s) 53
HhaI GCGC 2 cut(s) 52, 427
Hin6I GCGC 2 cut(s) 50, 425
HinP1I GCGC 2 cut(s) 50, 425
HinfI GANTC 2 cut(s) 359, 466
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 144, 494
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 3 cut(s) 22, 364, 576
Hpy188III TCNNGA 4 cut(s) 310, 343, 457, 508
Hpy8I GTNNAC 1 cut(s) 522
HpyAV CCTTC 2 cut(s) 325, 359
HpyCH4III ACNGT 3 cut(s) 324, 533, 591
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 74
HpySE526I ACGT 1 cut(s) 133
HspAI GCGC 2 cut(s) 50, 425
Kzo9I GATC 1 cut(s) 113
LpnPI CCDG 3 cut(s) 29, 66, 231
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 3 cut(s) 82, 127, 231
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 372, 402
MluCI AATT 4 cut(s) 5, 145, 163, 236
MnlI CCTC 4 cut(s) 58, 495, 515, 553
MseI TTAA 3 cut(s) 393, 629, 648
MslI CAYNNNNRTG 3 cut(s) 174, 250, 517
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 49, 74
NdeII GATC 1 cut(s) 113
NmuCI GTSAC 2 cut(s) 127, 231
PaeR7I CTCGAG 1 cut(s) 506
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 359, 466
PkrI GCNGC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 43
RseI CAYNNNNRTG 3 cut(s) 174, 250, 517
SaqAI TTAA 3 cut(s) 393, 629, 648
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 1 cut(s) 113
SduI GDGCHC 2 cut(s) 372, 402
SetI ASST 5 cut(s) 45, 136, 298, 399, 507
Sfr274I CTCGAG 1 cut(s) 506
SlaI CTCGAG 1 cut(s) 506
SmiMI CAYNNNNRTG 3 cut(s) 174, 250, 517
SmlI CTYRAG 3 cut(s) 308, 392, 506
SmoI CTYRAG 3 cut(s) 308, 392, 506
Sse9I AATT 4 cut(s) 5, 145, 163, 236
SsiI CCGC 1 cut(s) 189
TaaI ACNGT 3 cut(s) 324, 533, 591
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 507
TasI AATT 4 cut(s) 5, 145, 163, 236
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 2 cut(s) 359, 466
Tru1I TTAA 3 cut(s) 393, 629, 648
Tru9I TTAA 3 cut(s) 393, 629, 648
TseFI GTSAC 2 cut(s) 127, 231
Tsp45I GTSAC 2 cut(s) 127, 231
TspDTI ATGAA 3 cut(s) 17, 158, 629
TspGWI ACGGA 2 cut(s) 330, 420
Vha464I CTTAAG 1 cut(s) 392
XapI RAATTY 2 cut(s) 145, 163
XhoI CTCGAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.