AT2G26860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000140
Physical Location & Seq
Reverse (-)
11451950 .. 11453947
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26860.1

Sequence Viewer

Length: 1218 bp
ATGGACAGAATCAGTGGGTTACCTGATGAACTACTAGTGGAGATATTACACTGTCTTCCGACAAAAGAAGTTGTATCAACTAGCATTTTGTCTAAACGATGGGAGTTCCTTTGGTTGTGGGTACCTAAACTCACGTTCGTGATGAATCACTACGAATCAGATCTTCCTATTCAGGATTTTATCACCAAGAATCTGCGATTACTTAAACCTCAGGTTATAGAAAGCTTTCATCTCCAATGTTTTAGTTCATCATTTAAACCTGAGGATATTAAGCATTGGGTTGTTACTACTATCTCTCGCCGCGTGCGTGAGCTGATTATCAACTATTGTGATTTGTCTTGGCTTGACAAACCTGTTGTGTTATTAGATTTACCAAACAGCTTGTATACTTGCACATCGCTCGTCACTTTGAAACTTATAGGCCATTCCATTATTGTTGATGTTCCTCGAACGGTTTCTCTTCCTTGTTTGAAAACTTTGGAGCTTGATTCTGTGGCATACTCTAACGAAGAATCTCTTCGACTACTTCTATCGTATTGTCCTGTTCTTGAAGATTTGACTATTCATCGAGATATGCATGACAATGTCAAAACTCTTGTGATTATTGTTCCGTCTTTGCTTAGACTAAACTTACCGATAGACGGGGCTTATTCGTGTGATGGTTATGTGATAGTTACTCCTGCTTTGAAGTATTTAAAAGTTCCTGGCCTTTATAGAGAAGATTTCTCGTACTTGCTTACGCATATGCCTAACGTGGAAGAAGCAGATCTTAGTGTTGAGCAAGATGTTGAGAGGCTTTTTGAATCAATCACATCTGTTAAACGCCTTTCGTTATTCGTATTACTCGACATTGAAGACGAGTCTATGTATCATAATGGTATTTACTTCAATCAGCTTGAACATCTGAACCTACATATATACCGCGATAACTGGTCCAAATTACTTGTTCGGTTGCTCGAAGATTCTCCTAAACTACGAGTCCTCAAGATTGTTGTCGATGGTGAACCATCCTTTGATGAGGAGTTTGAACATGTTAGCTGGATATATAATGATGAGAGCTCTGTTCCTAAATGTTTGTTGGATAGTCTTGAAGTTTTCGAGTTTGCTGGATACACTAGAAGACCAGAAGAGAGAGATTTCGTGAGTTTTATCTTGAAGCATGCTTGTCATTTGAAGTCATCATCAATATCGCGCTTATCATGTTATGTTCTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

405

Amino Acids

47.05

Weight (kDa)

5.19

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 43 1e-08 F-box domain
LRR_At5g56370 PF24758 91 - 209 6.3e-14 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 156 - 181 6.5e-08 Leucine Rich Repeat
FBD PF08387 352 - 396 1.3e-16 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 386
AccII CGCG 3 cut(s) 303, 924, 1192
AciI CCGC 2 cut(s) 301, 922
AfaI GTAC 2 cut(s) 123, 731
AfiI CCNNNNNNNGG 1 cut(s) 641
AflIII ACRYGT 1 cut(s) 1030
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 703
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 7 cut(s) 225, 313, 381, 484, 895, 1038, 1059
AluI AGCT 7 cut(s) 225, 313, 381, 484, 895, 1038, 1059
Alw21I GWGCWC 1 cut(s) 1061
AoxI GGCC 2 cut(s) 421, 706
Asp700I GAANNNNTTC 3 cut(s) 225, 454, 516
Asp718I GGTACC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 1194
AspS9I GGNCC 1 cut(s) 933
AsuHPI GGTGA 2 cut(s) 175, 1013
AvaII GGWCC 1 cut(s) 933
AxyI CCTNAGG 2 cut(s) 210, 261
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 1061
BbsI GAAGAC 3 cut(s) 47, 861, 1126
Bbv12I GWGCWC 1 cut(s) 1061
BccI CCATC 4 cut(s) 93, 653, 992, 1015
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 705
BciVI GTATCC 1 cut(s) 1103
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 4 cut(s) 35, 81, 1116, 1211
BfuI GTATCC 1 cut(s) 1103
BglII AGATCT 2 cut(s) 160, 766
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 1 cut(s) 933
BmgT120I GGNCC 1 cut(s) 933
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 705
BpiI GAAGAC 3 cut(s) 47, 861, 1126
BpuEI CTTGAG 1 cut(s) 968
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse1I ACTGG 1 cut(s) 935
Bse21I CCTNAGG 2 cut(s) 210, 261
BseBI CCWGG 1 cut(s) 705
BseGI GGATG 1 cut(s) 1007
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 224, 252
BseNI ACTGG 1 cut(s) 935
BseRI GAGGAG 1 cut(s) 1034
Bsh1236I CGCG 3 cut(s) 303, 924, 1192
BshFI GGCC 2 cut(s) 423, 708
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 1061
BslI CCNNNNNNNGG 1 cut(s) 641
BsnI GGCC 2 cut(s) 423, 708
Bsp1286I GDGCHC 1 cut(s) 1061
Bsp143I GATC 2 cut(s) 160, 766
BspACI CCGC 2 cut(s) 301, 922
BspANI GGCC 2 cut(s) 423, 708
BspCNI CTCAG 2 cut(s) 223, 253
BspFNI CGCG 3 cut(s) 303, 924, 1192
BspLI GGNNCC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 935
BssMI GATC 2 cut(s) 160, 766
BssNAI GTATAC 1 cut(s) 387
Bst1107I GTATAC 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 2 cut(s) 53, 454
Bst6I CTCTTC 3 cut(s) 465, 522, 1122
BstC8I GCNNGC 2 cut(s) 305, 1161
BstDEI CTNAG 4 cut(s) 210, 261, 620, 770
BstEII GGTNACC 1 cut(s) 18
BstF5I GGATG 1 cut(s) 1007
BstFNI CGCG 3 cut(s) 303, 924, 1192
BstHHI GCGC 1 cut(s) 1194
BstKTI GATC 2 cut(s) 163, 769
BstMBI GATC 2 cut(s) 160, 766
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 2 cut(s) 1034, 1163
BstPI GGTNACC 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 703
BstUI CGCG 3 cut(s) 303, 924, 1192
BstV2I GAAGAC 3 cut(s) 47, 861, 1126
BstX2I RGATCY 2 cut(s) 160, 766
BstYI RGATCY 2 cut(s) 160, 766
BstZ17I GTATAC 1 cut(s) 387
Bsu36I CCTNAGG 2 cut(s) 210, 261
BsuI GTATCC 1 cut(s) 1103
BsuRI GGCC 2 cut(s) 423, 708
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 1007
BtsIMutI CAGTG 2 cut(s) 19, 49
Cac8I GCNNGC 2 cut(s) 305, 1161
CfoI GCGC 1 cut(s) 1194
Cfr13I GGNCC 1 cut(s) 933
Csp6I GTAC 2 cut(s) 122, 730
CviAII CATG 4 cut(s) 578, 1031, 1160, 1200
CviQI GTAC 2 cut(s) 122, 730
DdeI CTNAG 4 cut(s) 210, 261, 620, 770
DpnI GATC 2 cut(s) 162, 768
DpnII GATC 2 cut(s) 160, 766
DraI TTTAAA 2 cut(s) 256, 696
Eam1104I CTCTTC 3 cut(s) 465, 522, 1122
EarI CTCTTC 3 cut(s) 465, 522, 1122
Ecl136II GAGCTC 1 cut(s) 1059
Eco24I GRGCYC 1 cut(s) 1061
Eco47I GGWCC 1 cut(s) 933
Eco53kI GAGCTC 1 cut(s) 1059
Eco81I CCTNAGG 2 cut(s) 210, 261
Eco91I GGTNACC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 1059
EcoO65I GGTNACC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 579
EcoT38I GRGCYC 1 cut(s) 1061
FaeI CATG 4 cut(s) 581, 1034, 1163, 1203
FalI AAGNNNNNCTT 4 cut(s) 501, 533, 753, 785
FatI CATG 4 cut(s) 577, 1030, 1159, 1199
FauNDI CATATG 1 cut(s) 744
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 1 cut(s) 994
FriOI GRGCYC 1 cut(s) 1061
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 4 cut(s) 35, 81, 1116, 1211
GlaI GCGC 1 cut(s) 1193
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 2 cut(s) 423, 708
HhaI GCGC 1 cut(s) 1194
Hin1II CATG 4 cut(s) 581, 1034, 1163, 1203
Hin6I GCGC 1 cut(s) 1192
HinP1I GCGC 1 cut(s) 1192
HindIII AAGCTT 1 cut(s) 223
HphI GGTGA 2 cut(s) 175, 1013
Hpy166II GTNNAC 2 cut(s) 387, 1004
Hpy188I TCNGA 3 cut(s) 60, 160, 906
Hpy188III TCNNGA 9 cut(s) 139, 173, 548, 569, 985, 1088, 1141, 1153, 1211
Hpy8I GTNNAC 2 cut(s) 387, 1004
HpyCH4III ACNGT 2 cut(s) 53, 454
HpyCH4IV ACGT 2 cut(s) 134, 753
HpyCH4V TGCA 2 cut(s) 393, 577
HpyF3I CTNAG 4 cut(s) 210, 261, 620, 770
HpySE526I ACGT 2 cut(s) 134, 753
Hsp92II CATG 4 cut(s) 581, 1034, 1163, 1203
HspAI GCGC 1 cut(s) 1192
KpnI GGTACC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 160, 766
LmnI GCTCC 1 cut(s) 481
MaeI CTAG 4 cut(s) 35, 81, 1116, 1211
MaeII ACGT 2 cut(s) 134, 753
MaeIII GTNAC 4 cut(s) 18, 283, 403, 673
MalI GATC 2 cut(s) 162, 768
MboI GATC 2 cut(s) 160, 766
MflI RGATCY 2 cut(s) 160, 766
MhlI GDGCHC 1 cut(s) 1061
MluCI AATT 1 cut(s) 938
MlyI GAGTC 2 cut(s) 869, 987
MmeI TCCRAC 2 cut(s) 83, 1059
MnlI CCTC 6 cut(s) 219, 256, 456, 786, 992, 1012
Mph1103I ATGCAT 1 cut(s) 579
MroXI GAANNNNTTC 3 cut(s) 225, 454, 516
MseI TTAA 5 cut(s) 204, 255, 270, 695, 819
MslI CAYNNNNRTG 2 cut(s) 137, 582
MspR9I CCNGG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 3 cut(s) 303, 924, 1192
NdeI CATATG 1 cut(s) 744
NdeII GATC 2 cut(s) 160, 766
NlaIII CATG 4 cut(s) 581, 1034, 1163, 1203
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 2 cut(s) 1034, 1163
OliI CACNNNNGTG 1 cut(s) 137
PaeI GCATGC 1 cut(s) 1163
PciI ACATGT 1 cut(s) 1030
PcsI WCGNNNNNNNCGW 2 cut(s) 304, 843
PdmI GAANNNNTTC 3 cut(s) 225, 454, 516
PfeI GAWTC 8 cut(s) 9, 145, 155, 190, 488, 512, 803, 962
PflFI GACNNNGTC 1 cut(s) 584
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 2 cut(s) 868, 986
PpsI GAGTC 2 cut(s) 868, 986
PscI ACATGT 1 cut(s) 1030
Psp124BI GAGCTC 1 cut(s) 1061
Psp6I CCWGG 1 cut(s) 703
PspEI GGTNACC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 933
PsuI RGATCY 2 cut(s) 160, 766
PsyI GACNNNGTC 1 cut(s) 584
RsaI GTAC 2 cut(s) 123, 731
RsaNI GTAC 2 cut(s) 122, 730
RseI CAYNNNNRTG 2 cut(s) 137, 582
SacI GAGCTC 1 cut(s) 1061
SaqAI TTAA 5 cut(s) 204, 255, 270, 695, 819
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 2 cut(s) 160, 766
Sau96I GGNCC 1 cut(s) 933
SchI GAGTC 2 cut(s) 869, 987
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 1 cut(s) 1061
SinI GGWCC 1 cut(s) 933
SmiMI CAYNNNNRTG 2 cut(s) 137, 582
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
SpeI ACTAGT 1 cut(s) 34
SphI GCATGC 1 cut(s) 1163
Sse9I AATT 1 cut(s) 938
SsiI CCGC 2 cut(s) 301, 922
SspMI CTAG 4 cut(s) 35, 81, 1116, 1211
SstI GAGCTC 1 cut(s) 1061
StyD4I CCNGG 1 cut(s) 703
TaaI ACNGT 2 cut(s) 53, 454
TaiI ACGT 2 cut(s) 137, 756
TaqI TCGA 7 cut(s) 448, 520, 568, 846, 957, 996, 1098
TasI AATT 1 cut(s) 938
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 8 cut(s) 9, 145, 155, 190, 488, 512, 803, 962
Tru1I TTAA 5 cut(s) 204, 255, 270, 695, 819
Tru9I TTAA 5 cut(s) 204, 255, 270, 695, 819
TscAI CASTG 2 cut(s) 19, 56
TseFI GTSAC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 5 cut(s) 42, 158, 218, 237, 554
TspGWI ACGGA 1 cut(s) 600
TspRI CASTG 2 cut(s) 19, 56
Tth111I GACNNNGTC 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 933
XbaI TCTAGA 1 cut(s) 1210
XceI RCATGY 2 cut(s) 1034, 1163
XmiI GTMKAC 1 cut(s) 386
XmnI GAANNNNTTC 3 cut(s) 225, 454, 516
XspI CTAG 4 cut(s) 35, 81, 1116, 1211
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.