AT4G10420

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000140
Physical Location & Seq
Reverse (-)
6452811 .. 6454209
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10420.1

Sequence Viewer

Length: 969 bp
ATGTGGGTTGTAGTAGTTCTTTCTCGCTATGTACGTGAGCTGGAGATTTATAGTTCTTGCTATCAGGATAAGCAAAACATATTGCCAAGTAGCTTGTATACCTGCAAGTCACTCGTGATTTTGAAGCTCAATGGCGGGATTCTCATGGATGTTCCTCGAATGGTTTGTCTTCCTTCTCTGAAAACTTTGGTACTTAAAGGTGTGAACTACTTCAAACAAGAATCTCTTCAGCGACTTCTATCTAATTGCCCTGTTCTTGAAGATCTAGTAGTGAATTTATGTCATCATGACAATATGGGAAAGTTCATTGTTATTGTCCCATCTTTGCAACGTTTATCACTCTATATAGGTTATAAGCGTGTTTTAGATGAGTTTGTCATAGATACTCCTTCTTTAGAGTATTTCAAACTTGTGGATCGTAATTATGATAGTCACCCATGTTTGATTGAGAATATGCCTAAGCTGACGGAAGCATATGTCGATGTTAGATCCACTGATCTCCAGAGTCTCATTGGATCAATCACTTCTGTCAAGCGGCTTATAATATCCTCTAAGGCTATGTTTGGTGACGGTTATATCTTCAACCGCCTTGAGCGTCTGACACTACATGTATTGGAAGAGAACCCGTCGAATCTCCTTTCCCAGTTCCTCAAAGACTCTCCTAACTTACAAGAACTAGAGTACTTCTCTGAACTAGATGACAGTTATGAGAATATGCGTATGTTTCCCTGGAATCAACCGAGTATTGTTCCCGAATGCTTGTTGTCGAGTCTACAAAAGTTCACCTGGTCGCAGTACTTAGGAAGAACACAAGACAGAGATATTGCGGTTTACATCTTGAAAAACGCTTGTTGCTTAAGGAATGCAACAATCGATTCTTATACATGTTTGGTTCCAGAACTCAAGATGATAAAGGAATTGACTCGTTCTTCCCGAGCTTCAACAACATGTGAACTCAACTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

322

Amino Acids

37.15

Weight (kDa)

6.14

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 2 - 226 4.2e-17 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 2 - 295 1.3e-08 At1g61320/AtMIF1, LRR domain
LRR_2 PF07723 59 - 84 1.6e-07 Leucine Rich Repeat
FBD PF08387 246 - 291 5.6e-18 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 354, 542
Acc36I ACCTGC 1 cut(s) 110
AccI GTMKAC 2 cut(s) 98, 772
AciI CCGC 4 cut(s) 135, 535, 586, 827
AclI AACGTT 1 cut(s) 331
AclWI GGATC 3 cut(s) 423, 483, 523
AcsI RAATTY 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 4 cut(s) 33, 192, 683, 797
AflII CTTAAG 1 cut(s) 856
AflIII ACRYGT 3 cut(s) 607, 884, 947
AgsI TTSAA 7 cut(s) 124, 214, 260, 406, 583, 841, 942
AjnI CCWGG 2 cut(s) 728, 785
AluBI AGCT 5 cut(s) 40, 93, 127, 463, 938
AluI AGCT 5 cut(s) 40, 93, 127, 463, 938
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 3 cut(s) 423, 483, 523
Ama87I CYCGRG 1 cut(s) 933
ApoI RAATTY 1 cut(s) 274
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
Asp700I GAANNNNTTC 2 cut(s) 209, 225
AsuHPI GGTGA 3 cut(s) 425, 578, 775
AvaI CYCGRG 1 cut(s) 933
BauI CACGAG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 161
BccI CCATC 1 cut(s) 328
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 2 cut(s) 730, 787
BcoDI GTCTC 1 cut(s) 512
BfaI CTAG 3 cut(s) 266, 677, 695
BfrI CTTAAG 1 cut(s) 856
BfuAI ACCTGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 262
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
BmcAI AGTACT 2 cut(s) 683, 797
Bme1390I CCNGG 2 cut(s) 730, 787
BmeT110I CYCGRG 1 cut(s) 933
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 2 cut(s) 730, 787
BmrI ACTGGG 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 671, 703
BpmI CTGGAG 2 cut(s) 62, 485
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 2 cut(s) 611, 887
Bsa29I ATCGAT 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 728
Bse1I ACTGG 1 cut(s) 643
BseBI CCWGG 2 cut(s) 730, 787
BseCI ATCGAT 1 cut(s) 873
BseDI CCNNGG 1 cut(s) 728
BseGI GGATG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 643
BshVI ATCGAT 1 cut(s) 873
BsiHKCI CYCGRG 1 cut(s) 933
BslFI GGGAC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 2 cut(s) 761, 868
BsoBI CYCGRG 1 cut(s) 933
Bsp143I GATC 5 cut(s) 262, 415, 488, 496, 515
BspACI CCGC 4 cut(s) 135, 535, 586, 827
BspDI ATCGAT 1 cut(s) 873
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 894
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 3 cut(s) 423, 483, 523
BspTI CTTAAG 1 cut(s) 856
BsrI ACTGG 1 cut(s) 643
BssECI CCNNGG 1 cut(s) 728
BssMI GATC 5 cut(s) 262, 415, 488, 496, 515
BssNAI GTATAC 1 cut(s) 99
BssSI CACGAG 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 730, 787
Bst4CI ACNGT 2 cut(s) 572, 704
Bst6I CTCTTC 2 cut(s) 231, 612
BstAFI CTTAAG 1 cut(s) 856
BstBAI YACGTR 1 cut(s) 35
BstDEI CTNAG 3 cut(s) 459, 552, 799
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 5 cut(s) 265, 418, 491, 499, 518
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 5 cut(s) 262, 415, 488, 496, 515
BstNI CCWGG 2 cut(s) 730, 787
BstNSI RCATGY 3 cut(s) 611, 888, 951
BstSCI CCNGG 2 cut(s) 728, 785
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 262, 488
BstYI RGATCY 2 cut(s) 262, 488
BstZ17I GTATAC 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 873
BsuTUI ATCGAT 1 cut(s) 873
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 492
BveI ACCTGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 873
CseI GACGC 1 cut(s) 584
CsiI ACCWGGT 1 cut(s) 785
Csp6I GTAC 4 cut(s) 32, 191, 682, 796
CviAII CATG 6 cut(s) 145, 287, 438, 608, 885, 948
CviJI RGCY 7 cut(s) 40, 93, 127, 463, 538, 557, 938
CviKI_1 RGCY 7 cut(s) 40, 93, 127, 463, 538, 557, 938
CviQI GTAC 4 cut(s) 32, 191, 682, 796
DdeI CTNAG 3 cut(s) 459, 552, 799
DpnI GATC 5 cut(s) 264, 417, 490, 498, 517
DpnII GATC 5 cut(s) 262, 415, 488, 496, 515
Eam1104I CTCTTC 2 cut(s) 231, 612
EarI CTCTTC 2 cut(s) 231, 612
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 933
EcoRII CCWGG 2 cut(s) 728, 785
FaeI CATG 6 cut(s) 148, 290, 441, 611, 888, 951
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 1 cut(s) 302
FatI CATG 6 cut(s) 144, 286, 437, 607, 884, 947
FauI CCCGC 1 cut(s) 128
FauNDI CATATG 1 cut(s) 475
FblI GTMKAC 2 cut(s) 98, 772
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 3 cut(s) 266, 677, 695
GluI GCNGC 1 cut(s) 536
GsuI CTGGAG 2 cut(s) 62, 485
HgaI GACGC 1 cut(s) 584
Hin1II CATG 6 cut(s) 148, 290, 441, 611, 888, 951
HinfI GANTC 9 cut(s) 139, 221, 505, 631, 656, 733, 769, 875, 922
HphI GGTGA 3 cut(s) 425, 578, 775
Hpy166II GTNNAC 6 cut(s) 99, 205, 773, 783, 832, 953
Hpy188I TCNGA 3 cut(s) 180, 600, 691
Hpy8I GTNNAC 6 cut(s) 99, 205, 773, 783, 832, 953
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 2 cut(s) 183, 399
HpyCH4III ACNGT 2 cut(s) 572, 704
HpyCH4IV ACGT 2 cut(s) 34, 331
HpyCH4V TGCA 3 cut(s) 105, 328, 866
HpyF3I CTNAG 3 cut(s) 459, 552, 799
HpySE526I ACGT 2 cut(s) 34, 331
Hsp92II CATG 6 cut(s) 148, 290, 441, 611, 888, 951
Kzo9I GATC 5 cut(s) 262, 415, 488, 496, 515
MabI ACCWGGT 1 cut(s) 785
MaeI CTAG 3 cut(s) 266, 677, 695
MaeII ACGT 2 cut(s) 34, 331
MaeIII GTNAC 3 cut(s) 108, 431, 566
MalI GATC 5 cut(s) 264, 417, 490, 498, 517
MboI GATC 5 cut(s) 262, 415, 488, 496, 515
MboII GAAGA 7 cut(s) 161, 218, 272, 571, 629, 816, 921
MflI RGATCY 2 cut(s) 262, 488
MluCI AATT 4 cut(s) 244, 274, 421, 917
MlyI GAGTC 4 cut(s) 514, 650, 778, 916
MnlI CCTC 3 cut(s) 165, 559, 659
MroXI GAANNNNTTC 2 cut(s) 209, 225
MseI TTAA 2 cut(s) 195, 857
MspCI CTTAAG 1 cut(s) 856
MspR9I CCNGG 2 cut(s) 730, 787
Mva1269I GAATGC 2 cut(s) 761, 868
MvaI CCWGG 2 cut(s) 730, 787
NdeI CATATG 1 cut(s) 475
NdeII GATC 5 cut(s) 262, 415, 488, 496, 515
NlaIII CATG 6 cut(s) 148, 290, 441, 611, 888, 951
NlaIV GGNNCC 1 cut(s) 894
NmuCI GTSAC 3 cut(s) 108, 431, 566
NspI RCATGY 3 cut(s) 611, 888, 951
PagI TCATGA 1 cut(s) 286
PciI ACATGT 3 cut(s) 607, 884, 947
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 931
PctI GAATGC 2 cut(s) 761, 868
PdmI GAANNNNTTC 2 cut(s) 209, 225
PfeI GAWTC 5 cut(s) 139, 221, 631, 733, 875
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 4 cut(s) 513, 650, 777, 916
PpsI GAGTC 4 cut(s) 513, 650, 777, 916
Ppu21I YACGTR 1 cut(s) 35
PscI ACATGT 3 cut(s) 607, 884, 947
PsiI TTATAA 2 cut(s) 354, 542
Psp1406I AACGTT 1 cut(s) 331
Psp6I CCWGG 2 cut(s) 728, 785
PspGI CCWGG 2 cut(s) 728, 785
PspN4I GGNNCC 1 cut(s) 894
PsuI RGATCY 2 cut(s) 262, 488
RsaI GTAC 4 cut(s) 33, 192, 683, 797
RsaNI GTAC 4 cut(s) 32, 191, 682, 796
SaqAI TTAA 2 cut(s) 195, 857
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 5 cut(s) 262, 415, 488, 496, 515
ScaI AGTACT 2 cut(s) 683, 797
SchI GAGTC 4 cut(s) 514, 650, 778, 916
ScrFI CCNGG 2 cut(s) 730, 787
SexAI ACCWGGT 1 cut(s) 785
SmlI CTYRAG 3 cut(s) 590, 856, 902
SmoI CTYRAG 3 cut(s) 590, 856, 902
Sse9I AATT 4 cut(s) 244, 274, 421, 917
SsiI CCGC 4 cut(s) 135, 535, 586, 827
SspMI CTAG 3 cut(s) 266, 677, 695
StyD4I CCNGG 2 cut(s) 728, 785
TaaI ACNGT 2 cut(s) 572, 704
TaiI ACGT 2 cut(s) 37, 334
TaqI TCGA 5 cut(s) 157, 480, 629, 767, 873
TasI AATT 4 cut(s) 244, 274, 421, 917
TatI WGTACW 2 cut(s) 681, 795
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 5 cut(s) 139, 221, 631, 733, 875
Tru1I TTAA 2 cut(s) 195, 857
Tru9I TTAA 2 cut(s) 195, 857
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 3 cut(s) 108, 431, 566
Tsp45I GTSAC 3 cut(s) 108, 431, 566
TspDTI ATGAA 1 cut(s) 295
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 856
XapI RAATTY 1 cut(s) 274
XceI RCATGY 3 cut(s) 611, 888, 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XmiI GTMKAC 2 cut(s) 98, 772
XmnI GAANNNNTTC 2 cut(s) 209, 225
XspI CTAG 3 cut(s) 266, 677, 695
ZrmI AGTACT 2 cut(s) 683, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.