RLG00000036095

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000140
Physical Location & Seq
Forward (+)
75714762 .. 75717710
2949 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036095

Sequence Viewer

Length: 1203 bp
ATGCACGATGATTGGATTGGTGTCGACATCGGGTTCTGGATTGGCATGAGTACAGTCGCCGCAACAAAGTGGATCGATAATGGTGCTCAGATCCATGCAGCGGATTTCGGAGTGAAGTCTTGTCGGGGCTTGGAGAAGGGTGATGCATCTCGTGTTAGTTCGTGGACTTCTGGCTTAGTCTGGCGCAATGTTGAAAAGCTTTCTCTTGCTCTGGATGGGGCTAGATCAAAATTTTCGTTCGCTCCGTGTTTATTTACTTGTGCGACACTGAGGGACTTAGAACTATATGTCCCTAGTAAATTGAAAGTTCCTGCTACTGTTTCTTTTCCAAGTCTCAGGAGATTGTCTCTGAACTCTGTGGTGTTTACTGATGACTATTCAACTCAGAAGCTGTTTTCTGGTTGCCCAGTTCTCAATGAATTGTCTCTAATCAATTGCAATTGGGCGAATCTCAAGTCCGTGACTATTTCTGCTTCCAATCTTTTGAGCTTGATCATATATGAAACCGGTGGTCAGTTACAGCTTTTCGGACGTTGTTGTCAGATTATGGTATATGGAGTCAGTCTCAAATATTTTCGGTACAAGGGCGGTTTCCTAAATGATTATTACTTTGATAACTCATATGTAGATAAGGCTGAGATTCTTACTCCTACTTCGAGATTGAGACATGTGAGTTACCGGTTGTATAAGCTGTTTCGGGAGTTCTCTAGTATGAAGATGTTAACTACCTCTTCTTCATCCTTTAAGGTGGTTCAGACTAATGCATCAGAACTTCTCGCCCAGATGCCCTTGTTTAGTAATCTTGCCACTTTGATATTTGAAGAAAAGCCAGTAGATATTGACTGCGAAGGACTACTGAGGATGTTCCAAAACTGTCCTTGTCTCCAAACTCTAGTATTCAGTGAGGGCATTAGACTGTGGTGCAAAGATGCAGAAGATGATGGGGTGTTAAGGCCACAGCCTCCTTGTTTCTTGAAAACTCTTGAAAAGATTGAAGTTCATGCATTTCATGGAAACAGGGATGAGCTTGCTGCATTAAAGGTTCTCTTAAAGAATGCAATGGTCTTGGAGAAGCTGATTATAACTTGCTCCGATTCTTTTCAAGGCGGACCGGAGAAGTTGAAGGATGTTAACAATCAATTAGCAGATTTACCTAGAGGGTCATCCAAATGCTATGAATTTATTTGTTCGTTGAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

401

Amino Acids

44.84

Weight (kDa)

7.83

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 30 - 365 1.7e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 53 - 168 8.4e-13 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 321 - 361 8.9e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1082
AasI GACNNNNNNGTC 1 cut(s) 537
AccI GTMKAC 1 cut(s) 24
AciI CCGC 4 cut(s) 60, 101, 588, 1107
AclWI GGATC 2 cut(s) 80, 85
AcsI RAATTY 2 cut(s) 230, 1178
AfaI GTAC 2 cut(s) 52, 581
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 667
AgeI ACCGGT 2 cut(s) 506, 678
AgsI TTSAA 9 cut(s) 194, 304, 381, 821, 976, 986, 995, 1103, 1123
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 7 cut(s) 199, 391, 489, 523, 691, 1027, 1075
AluI AGCT 7 cut(s) 199, 391, 489, 523, 691, 1027, 1075
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 6 cut(s) 338, 351, 429, 569, 658, 887
AlwI GGATC 2 cut(s) 80, 85
AlwNI CAGNNNCTG 1 cut(s) 391
AoxI GGCC 1 cut(s) 953
ApeKI GCWGC 2 cut(s) 98, 1031
ApoI RAATTY 2 cut(s) 230, 1178
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AsiGI ACCGGT 2 cut(s) 506, 678
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 1109
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 1199
BauI CACGAG 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 110, 1018
BccI CCATC 2 cut(s) 209, 935
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 6 cut(s) 338, 351, 429, 569, 658, 887
BfaI CTAG 5 cut(s) 222, 294, 708, 893, 1155
BisI GCNGC 3 cut(s) 60, 99, 1032
BlsI GCNGC 3 cut(s) 61, 100, 1033
Bme18I GGWCC 1 cut(s) 1109
BmgT120I GGNCC 1 cut(s) 1109
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 5 cut(s) 133, 155, 773, 774, 919
BmuI ACTGGG 1 cut(s) 401
BplI GAGNNNNNCTC 4 cut(s) 331, 363, 549, 581
BpuEI CTTGAG 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 75
BsaWI WCCGGW 3 cut(s) 506, 678, 1111
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 2 cut(s) 506, 678
Bse1I ACTGG 2 cut(s) 407, 830
Bse3DI GCAATG 2 cut(s) 193, 1065
BseCI ATCGAT 1 cut(s) 75
BseGI GGATG 6 cut(s) 220, 737, 867, 1027, 1132, 1163
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 2 cut(s) 193, 1065
BseMII CTCAG 6 cut(s) 101, 260, 349, 398, 627, 848
BseNI ACTGG 2 cut(s) 407, 830
BseXI GCAGC 2 cut(s) 110, 1018
BshFI GGCC 1 cut(s) 955
BshTI ACCGGT 2 cut(s) 506, 678
BshVI ATCGAT 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 3 cut(s) 507, 679, 1112
BslFI GGGAC 2 cut(s) 275, 287
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 6 cut(s) 338, 351, 429, 569, 658, 887
BsmFI GGGAC 2 cut(s) 275, 287
BsmI GAATGC 1 cut(s) 1060
BsnI GGCC 1 cut(s) 955
Bsp1286I GDGCHC 2 cut(s) 88, 1199
Bsp143I GATC 4 cut(s) 72, 90, 224, 492
BspACI CCGC 4 cut(s) 60, 101, 588, 1107
BspANI GGCC 1 cut(s) 955
BspCNI CTCAG 6 cut(s) 100, 261, 348, 397, 628, 849
BspDI ATCGAT 1 cut(s) 75
BspPI GGATC 2 cut(s) 80, 85
BsrDI GCAATG 2 cut(s) 193, 1065
BsrFI RCCGGY 2 cut(s) 506, 678
BsrI ACTGG 2 cut(s) 407, 830
BssAI RCCGGY 2 cut(s) 506, 678
BssMI GATC 4 cut(s) 72, 90, 224, 492
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst4CI ACNGT 4 cut(s) 55, 319, 875, 918
Bst6I CTCTTC 1 cut(s) 736
BstC8I GCNNGC 1 cut(s) 1029
BstDEI CTNAG 8 cut(s) 87, 175, 269, 277, 335, 384, 636, 857
BstF5I GGATG 6 cut(s) 220, 737, 867, 1027, 1132, 1163
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 4 cut(s) 75, 93, 227, 495
BstMAI GTCTC 6 cut(s) 338, 351, 429, 569, 658, 887
BstMBI GATC 4 cut(s) 72, 90, 224, 492
BstNSI RCATGY 1 cut(s) 671
BstV1I GCAGC 2 cut(s) 110, 1018
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 955
BsuTUI ATCGAT 1 cut(s) 75
BtsCI GGATG 6 cut(s) 220, 737, 867, 1027, 1132, 1163
BtsIMutI CAGTG 2 cut(s) 266, 907
Cac8I GCNNGC 1 cut(s) 1029
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 2 cut(s) 506, 678
Cfr13I GGNCC 1 cut(s) 1109
ClaI ATCGAT 1 cut(s) 75
CpoI CGGWCCG 1 cut(s) 1109
Csp6I GTAC 2 cut(s) 51, 580
CspAI ACCGGT 2 cut(s) 506, 678
CspI CGGWCCG 1 cut(s) 1109
CviAII CATG 5 cut(s) 46, 95, 668, 1001, 1010
CviQI GTAC 2 cut(s) 51, 580
DdeI CTNAG 8 cut(s) 87, 175, 269, 277, 335, 384, 636, 857
DpnI GATC 4 cut(s) 74, 92, 226, 494
DpnII GATC 4 cut(s) 72, 90, 224, 492
DrdI GACNNNNNNGTC 1 cut(s) 537
DseDI GACNNNNNNGTC 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 736
EarI CTCTTC 1 cut(s) 736
EciI GGCGGA 1 cut(s) 1122
Eco24I GRGCYC 1 cut(s) 1199
Eco47I GGWCC 1 cut(s) 1109
EcoT22I ATGCAT 3 cut(s) 148, 766, 1006
EcoT38I GRGCYC 1 cut(s) 1199
FaeI CATG 5 cut(s) 49, 98, 671, 1004, 1013
FalI AAGNNNNNCTT 2 cut(s) 1031, 1063
FaqI GGGAC 2 cut(s) 275, 287
FatI CATG 5 cut(s) 45, 94, 667, 1000, 1009
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 60, 99, 1032
FokI GGATG 6 cut(s) 227, 724, 874, 1034, 1139, 1150
FriOI GRGCYC 1 cut(s) 1199
Fsp4HI GCNGC 3 cut(s) 60, 99, 1032
FspBI CTAG 5 cut(s) 222, 294, 708, 893, 1155
GlaI GCGC 1 cut(s) 185
GluI GCNGC 3 cut(s) 60, 99, 1032
HaeIII GGCC 1 cut(s) 955
HapII CCGG 3 cut(s) 507, 679, 1112
HhaI GCGC 1 cut(s) 186
Hin1II CATG 5 cut(s) 49, 98, 671, 1004, 1013
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 3 cut(s) 25, 723, 1132
HindII GTYRAC 3 cut(s) 25, 723, 1132
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 448, 558, 640, 1094
HpaI GTTAAC 2 cut(s) 723, 1132
HpaII CCGG 3 cut(s) 507, 679, 1112
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 5 cut(s) 25, 165, 366, 723, 1132
Hpy188I TCNGA 9 cut(s) 90, 110, 351, 387, 530, 543, 756, 769, 1093
Hpy188III TCNNGA 7 cut(s) 37, 212, 337, 657, 698, 973, 983
Hpy8I GTNNAC 5 cut(s) 25, 165, 366, 723, 1132
HpyAV CCTTC 3 cut(s) 130, 842, 1117
HpyCH4III ACNGT 4 cut(s) 55, 319, 875, 918
HpyCH4IV ACGT 1 cut(s) 532
HpyF3I CTNAG 8 cut(s) 87, 175, 269, 277, 335, 384, 636, 857
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 5 cut(s) 49, 98, 671, 1004, 1013
HspAI GCGC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 492
KspAI GTTAAC 2 cut(s) 723, 1132
Kzo9I GATC 4 cut(s) 72, 90, 224, 492
LmnI GCTCC 2 cut(s) 247, 1094
Lsp1109I GCAGC 2 cut(s) 110, 1018
LweI GCATC 5 cut(s) 133, 155, 773, 774, 919
MaeI CTAG 5 cut(s) 222, 294, 708, 893, 1155
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 3 cut(s) 460, 516, 674
MalI GATC 4 cut(s) 74, 92, 226, 494
MboI GATC 4 cut(s) 72, 90, 224, 492
MboII GAAGA 5 cut(s) 723, 726, 727, 833, 947
MfeI CAATTG 2 cut(s) 433, 439
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 88, 1199
MluCI AATT 7 cut(s) 230, 299, 419, 433, 439, 1139, 1178
MlyI GAGTC 1 cut(s) 567
MnlI CCTC 6 cut(s) 264, 739, 852, 898, 972, 1151
Mph1103I ATGCAT 3 cut(s) 148, 766, 1006
MseI TTAA 6 cut(s) 722, 744, 950, 1037, 1049, 1131
MslI CAYNNNNRTG 1 cut(s) 1168
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 3 cut(s) 507, 679, 1112
MunI CAATTG 2 cut(s) 433, 439
Mva1269I GAATGC 1 cut(s) 1060
NdeI CATATG 1 cut(s) 622
NdeII GATC 4 cut(s) 72, 90, 224, 492
NlaIII CATG 5 cut(s) 49, 98, 671, 1004, 1013
NmuCI GTSAC 1 cut(s) 460
NsiI ATGCAT 3 cut(s) 148, 766, 1006
NspI RCATGY 1 cut(s) 671
PciI ACATGT 1 cut(s) 667
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PctI GAATGC 1 cut(s) 1060
PfeI GAWTC 3 cut(s) 448, 640, 1094
PinAI ACCGGT 2 cut(s) 506, 678
PkrI GCNGC 3 cut(s) 61, 100, 1033
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PscI ACATGT 1 cut(s) 667
PsiI TTATAA 1 cut(s) 1082
PspPI GGNCC 1 cut(s) 1109
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 2 cut(s) 52, 581
RsaNI GTAC 2 cut(s) 51, 580
RseI CAYNNNNRTG 1 cut(s) 1168
Rsr2I CGGWCCG 1 cut(s) 1109
RsrII CGGWCCG 1 cut(s) 1109
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 6 cut(s) 722, 744, 950, 1037, 1049, 1131
SatI GCNGC 3 cut(s) 60, 99, 1032
Sau3AI GATC 4 cut(s) 72, 90, 224, 492
Sau96I GGNCC 1 cut(s) 1109
SchI GAGTC 1 cut(s) 567
SduI GDGCHC 2 cut(s) 88, 1199
SfaNI GCATC 5 cut(s) 133, 155, 773, 774, 919
SinI GGWCC 1 cut(s) 1109
SmiMI CAYNNNNRTG 1 cut(s) 1168
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 7 cut(s) 230, 299, 419, 433, 439, 1139, 1178
SsiI CCGC 4 cut(s) 60, 101, 588, 1107
SspI AATATT 1 cut(s) 572
SspMI CTAG 5 cut(s) 222, 294, 708, 893, 1155
TaaI ACNGT 4 cut(s) 55, 319, 875, 918
TaiI ACGT 1 cut(s) 535
TaqI TCGA 3 cut(s) 24, 75, 656
TasI AATT 7 cut(s) 230, 299, 419, 433, 439, 1139, 1178
TatI WGTACW 1 cut(s) 50
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 3 cut(s) 448, 640, 1094
Tru1I TTAA 6 cut(s) 722, 744, 950, 1037, 1049, 1131
Tru9I TTAA 6 cut(s) 722, 744, 950, 1037, 1049, 1131
TscAI CASTG 2 cut(s) 273, 907
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 2 cut(s) 98, 1031
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 7 cut(s) 432, 516, 726, 728, 989, 998, 1191
TspGWI ACGGA 2 cut(s) 234, 448
TspRI CASTG 2 cut(s) 273, 907
VpaK11BI GGWCC 1 cut(s) 1109
XapI RAATTY 2 cut(s) 230, 1178
XceI RCATGY 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 5 cut(s) 222, 294, 708, 893, 1155
Zsp2I ATGCAT 3 cut(s) 148, 766, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.