AT5G40750

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Forward (+)
16308356 .. 16309819
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40750.1

Sequence Viewer

Length: 894 bp
ATGGCAGTTTATTTGGACGATGGTGCCGTAGCTGAATCATTGCGACTCCACAAGGCACCTATATTAGAAAGATTGACTATAAAACTCGGTCCACATTGTCCTGTTAATGCTAACGTGGGAAAGTGGATTGGAAATGCGGTTGATCGCAGGGTTTTTGTAGATGTTTCTTCTCCGGTATGCCTCCCACCTCTCAAACGTCTTCTCCTTGTCTTTGTGGTATACAAAGATGATGATTATGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCGAATATTTGTATGTGTTGCAACATGAGCAAGACAATGTGACAAAGTTTAGTGTAAAAGTTCCATCTTTAGAGACTTTAATATATTTTTATCGGAAAGCAAAAGTACTTGACGAGGAAGATATTGGAAGATCTTTGGCCATAGATTCTAAGATTTTAAAGAAATTCTTCATCGCAGATTATTCTACAAACTCGTGCTCGATTGAGAACAAACCTAGCTTTGATAAAGCAGTTATCTACGTTTATAGTTACCCTGATGACAAATTTATGAGATCTCTTTCCTCAGTCAGATATCTCGAGATACGTCTAAGCGTTGCAACGAAACCGAATGATATTCCTCCATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAAAGAATATGGAGCGACAAGCGAAGAGAAACAAGTGTTAAGTTACATTCTTGCCAACTCCAAATGTTTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAGAAGATAATGAAGGAGTTGAAATCCATGTATAGGATATCAACAACATCTCAGCTTCTCTTCTCCACTCAACTGGAGTTTAAGCCTTTGTGGACTCCATTTAGAAACAACGTAACTAACCTCAAAATTGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

297

Amino Acids

34.13

Weight (kDa)

9.37

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_2 PF07723 64 - 88 9.5e-07 Leucine Rich Repeat
FBD PF08387 198 - 242 1.8e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 23, 55
AccI GTMKAC 1 cut(s) 219
AciI CCGC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 2 cut(s) 431, 530
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 2 cut(s) 747, 789
AgsI TTSAA 2 cut(s) 733, 778
AjnI CCWGG 1 cut(s) 740
AluBI AGCT 4 cut(s) 32, 486, 719, 811
AluI AGCT 4 cut(s) 32, 486, 719, 811
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 1 cut(s) 405
ApoI RAATTY 2 cut(s) 431, 530
Asp700I GAANNNNTTC 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 407
BanI GGYRCC 2 cut(s) 23, 55
BauI CACGAG 1 cut(s) 460
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 467
BccI CCATC 2 cut(s) 14, 340
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 742
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 483
BglII AGATCT 3 cut(s) 398, 539, 630
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 742
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 25, 57
BmrFI CCNGG 1 cut(s) 742
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 851
BpuEI CTTGAG 1 cut(s) 611
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 747, 789
Bse1I ACTGG 1 cut(s) 834
Bse3DI GCAATG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 742
BseLI CCNNNNNNNGG 2 cut(s) 747, 789
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 2 cut(s) 564, 821
BseNI ACTGG 1 cut(s) 834
BshFI GGCC 1 cut(s) 407
BshNI GGYRCC 2 cut(s) 23, 55
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 747, 789
BsmAI GTCTC 1 cut(s) 335
BsnI GGCC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 4 cut(s) 142, 398, 539, 630
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 2 cut(s) 563, 820
BspLI GGNNCC 2 cut(s) 25, 57
BspT107I GGYRCC 2 cut(s) 23, 55
BsrDI GCAATG 1 cut(s) 38
BsrI ACTGG 1 cut(s) 834
BssMI GATC 4 cut(s) 142, 398, 539, 630
BssNAI GTATAC 1 cut(s) 220
BssSI CACGAG 1 cut(s) 460
Bst1107I GTATAC 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 742
Bst6I CTCTTC 2 cut(s) 660, 821
BstDEI CTNAG 4 cut(s) 417, 550, 575, 807
BstKTI GATC 4 cut(s) 145, 401, 542, 633
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 142, 398, 539, 630
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 742
BstSCI CCNGG 1 cut(s) 740
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 3 cut(s) 398, 539, 630
BstXI CCANNNNNNTGG 1 cut(s) 829
BstYI RGATCY 3 cut(s) 398, 539, 630
BstZ17I GTATAC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 374
CviAII CATG 3 cut(s) 293, 609, 784
CviJI RGCY 7 cut(s) 32, 247, 407, 486, 719, 811, 841
CviKI_1 RGCY 7 cut(s) 32, 247, 407, 486, 719, 811, 841
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 4 cut(s) 417, 550, 575, 807
DpnI GATC 4 cut(s) 144, 400, 541, 632
DpnII GATC 4 cut(s) 142, 398, 539, 630
DraI TTTAAA 2 cut(s) 426, 711
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 2 cut(s) 660, 821
EarI CTCTTC 2 cut(s) 660, 821
Eco32I GATATC 2 cut(s) 560, 795
Eco47I GGWCC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 740
EcoRV GATATC 2 cut(s) 560, 795
FaeI CATG 3 cut(s) 296, 612, 787
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 3 cut(s) 292, 608, 783
FblI GTMKAC 1 cut(s) 219
FspBI CTAG 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 1 cut(s) 407
HapII CCGG 1 cut(s) 173
Hin1II CATG 3 cut(s) 296, 612, 787
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 5 cut(s) 35, 45, 413, 723, 850
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 4 cut(s) 92, 220, 618, 849
Hpy188I TCNGA 2 cut(s) 363, 557
Hpy188III TCNNGA 4 cut(s) 269, 563, 565, 628
Hpy8I GTNNAC 4 cut(s) 92, 220, 618, 849
HpyAV CCTTC 1 cut(s) 763
HpyCH4IV ACGT 5 cut(s) 114, 196, 507, 571, 867
HpyCH4V TGCA 2 cut(s) 289, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 4 cut(s) 417, 550, 575, 807
HpySE526I ACGT 5 cut(s) 114, 196, 507, 571, 867
Hsp92II CATG 3 cut(s) 296, 612, 787
Kzo9I GATC 4 cut(s) 142, 398, 539, 630
LmnI GCTCC 1 cut(s) 653
LpnPI CCDG 8 cut(s) 114, 133, 186, 534, 705, 727, 754, 815
MaeI CTAG 1 cut(s) 483
MaeII ACGT 5 cut(s) 114, 196, 507, 571, 867
MaeIII GTNAC 4 cut(s) 307, 515, 683, 868
MalI GATC 4 cut(s) 144, 400, 541, 632
MboI GATC 4 cut(s) 142, 398, 539, 630
MboII GAAGA 8 cut(s) 159, 191, 398, 408, 427, 677, 772, 808
MflI RGATCY 3 cut(s) 398, 539, 630
MhlI GDGCHC 1 cut(s) 467
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 3 cut(s) 431, 530, 882
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 2 cut(s) 39, 844
MnlI CCTC 6 cut(s) 191, 198, 376, 559, 615, 887
Mox20I TGGCCA 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 434
MscI TGGCCA 1 cut(s) 407
MseI TTAA 6 cut(s) 105, 347, 425, 680, 710, 837
Msp20I TGGCCA 1 cut(s) 407
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 742
MvaI CCWGG 1 cut(s) 742
MwoI GCNNNNNNNGC 1 cut(s) 295
NdeII GATC 4 cut(s) 142, 398, 539, 630
NlaIII CATG 3 cut(s) 296, 612, 787
NlaIV GGNNCC 2 cut(s) 25, 57
NmuCI GTSAC 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 563
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 3 cut(s) 35, 413, 723
PleI GAGTC 2 cut(s) 39, 844
PpsI GAGTC 2 cut(s) 39, 844
Psp6I CCWGG 1 cut(s) 740
PspGI CCWGG 1 cut(s) 740
PspN4I GGNNCC 2 cut(s) 25, 57
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 3 cut(s) 398, 539, 630
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
SaqAI TTAA 6 cut(s) 105, 347, 425, 680, 710, 837
Sau3AI GATC 4 cut(s) 142, 398, 539, 630
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 2 cut(s) 39, 844
ScrFI CCNGG 1 cut(s) 742
SduI GDGCHC 1 cut(s) 467
Sfr274I CTCGAG 1 cut(s) 563
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 563, 626
SmoI CTYRAG 2 cut(s) 563, 626
Sse9I AATT 3 cut(s) 431, 530, 882
SsiI CCGC 1 cut(s) 137
SspI AATATT 1 cut(s) 275
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 740
TaiI ACGT 5 cut(s) 117, 199, 510, 574, 870
TaqI TCGA 4 cut(s) 254, 270, 467, 564
TaqII GACCGA 1 cut(s) 77
TasI AATT 3 cut(s) 431, 530, 882
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 3 cut(s) 35, 413, 723
Tru1I TTAA 6 cut(s) 105, 347, 425, 680, 710, 837
Tru9I TTAA 6 cut(s) 105, 347, 425, 680, 710, 837
TseFI GTSAC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 2 cut(s) 427, 782
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 2 cut(s) 431, 530
XhoI CTCGAG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 1 cut(s) 483
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.