AT5G44850

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Forward (+)
18108304 .. 18109593
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44850.1

Sequence Viewer

Length: 996 bp
ATGATGCCTAGACTTGAGTACAAAGATGATAAGAAAAGCAAACAGAGTATTTGGTTGTTTCTTGACCAGTCACTGCAACTCCACAAGGCACCTGTGCTACACAGCTTGTGTATCAAACTTGGTTCACAATGTCCTGTTGATGTTGAAGTCGGCAAATGGGTTGCAAAGGCCGTTGATCGCTTTGTGCGTAAGCTAAAGTTTAAGCTTCTCTGGTCCGCAGATCCAATCAGCTTACCTAAGAGCCTTTACACATGTGAAACGCTAGTGAAACTGAAAATCTCCGACAAGGTTCTCACAGATTTTCCTTCTTCTCCCGCGTGCCTCCCATCCCTTAAAAAGCTCAACCTAATCAATGTGGTTTATAAAGACGATGCTTCTCTCATTAGGTTCTTGGTTATAGATACTCCGGCAGTGAAGTACATTCACCTCACTAATTGTTCAAAACAGTATTGCTTGATCAAGAACATGCCTTGTCTTGATCGTGCATATATAAGTGTTCATACGTACGCTGATGACAAGTTGCCAAGATCTCTTTCGTCCGTCTTGTTTCTTGAGTTGGATTTGGCTGATGAAATGCTTTTGCGTTGTAGCGCTATCAACTTCTCTCGACTTACAGAGTTAATAATTTGTCCGGATGAATCAGACTGGTTGGAACCACTCATGCTTTTACTTGGAAAATCTCCAAAGCTAAAAAAACTTTCGGTTGATTATGGACCAACCGAAAACCCCGAGGATCTCCCACTTTCATGGAACGAACCGAGTTCAGTTCCTGGTTGCTTGTCTTCTCATCTCGAGATCTTTGAATGGGTGGAAAAATATGGAGGAAGAGTAGAAGAGTTAGGATTCGTCACGTACATCCTAGCTAACTCGAAGTGTTTAAAAAGAGCAACAATCTCCCTAAGGTCTGCATTCAACCTTGAACAGAAACAAAAGGTGATGAAGGAATTGGATTCAATTCCTAGAGTTTCCAAGTCATCTCAGCTTCTTCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

331

Amino Acids

37.65

Weight (kDa)

8.72

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 51 - 149 4.2e-07 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 252 - 298 6.8e-21 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 88
AccII CGCG 1 cut(s) 317
AccIII TCCGGA 1 cut(s) 631
AciI CCGC 2 cut(s) 216, 315
AclWI GGATC 2 cut(s) 215, 741
AfaI GTAC 4 cut(s) 20, 419, 506, 854
AfeI AGCGCT 1 cut(s) 592
AflIII ACRYGT 1 cut(s) 251
AgsI TTSAA 6 cut(s) 146, 441, 803, 913, 920, 954
AjnI CCWGG 1 cut(s) 769
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AluBI AGCT 8 cut(s) 105, 193, 205, 231, 340, 688, 863, 982
AluI AGCT 8 cut(s) 105, 193, 205, 231, 340, 688, 863, 982
AlwI GGATC 2 cut(s) 215, 741
AlwNI CAGNNNCTG 2 cut(s) 73, 770
Ama87I CYCGRG 2 cut(s) 728, 791
Aor13HI TCCGGA 1 cut(s) 631
Aor51HI AGCGCT 1 cut(s) 592
AoxI GGCC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 2 cut(s) 213, 713
AsuHPI GGTGA 2 cut(s) 416, 946
AvaI CYCGRG 2 cut(s) 728, 791
AvaII GGWCC 2 cut(s) 213, 713
AxyI CCTNAGG 1 cut(s) 899
BanI GGYRCC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 774
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 771
BclI TGATCA 1 cut(s) 456
BfaI CTAG 4 cut(s) 9, 263, 860, 960
BfoI RGCGCY 1 cut(s) 594
BglII AGATCT 2 cut(s) 527, 795
Bme1390I CCNGG 1 cut(s) 771
Bme18I GGWCC 2 cut(s) 213, 713
BmeT110I CYCGRG 2 cut(s) 728, 791
BmgT120I GGNCC 2 cut(s) 213, 713
BmiI GGNNCC 2 cut(s) 90, 654
BmrFI CCNGG 1 cut(s) 771
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 774
BpuEI CTTGAG 2 cut(s) 35, 572
BsaAI YACGTR 2 cut(s) 504, 852
BsaJI CCNNGG 1 cut(s) 729
BsaWI WCCGGW 1 cut(s) 631
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 813, 843
Bse1I ACTGG 2 cut(s) 67, 650
Bse21I CCTNAGG 1 cut(s) 899
BseAI TCCGGA 1 cut(s) 631
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 3 cut(s) 326, 640, 855
BseMII CTCAG 1 cut(s) 992
BseNI ACTGG 2 cut(s) 67, 650
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 88
BsiHKCI CYCGRG 2 cut(s) 728, 791
BsiSI CCGG 2 cut(s) 407, 632
BsiWI CGTACG 1 cut(s) 504
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 2 cut(s) 728, 791
Bsp13I TCCGGA 1 cut(s) 631
Bsp143I GATC 7 cut(s) 175, 220, 456, 478, 527, 733, 795
BspACI CCGC 2 cut(s) 216, 315
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 991
BspEI TCCGGA 1 cut(s) 631
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 90, 654
BspPI GGATC 2 cut(s) 215, 741
BspT107I GGYRCC 1 cut(s) 88
BsrI ACTGG 2 cut(s) 67, 650
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 7 cut(s) 175, 220, 456, 478, 527, 733, 795
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 2 cut(s) 820, 828
BstBAI YACGTR 2 cut(s) 504, 852
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 237, 899, 978
BstF5I GGATG 3 cut(s) 326, 640, 855
BstFNI CGCG 1 cut(s) 317
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 7 cut(s) 178, 223, 459, 481, 530, 736, 798
BstMBI GATC 7 cut(s) 175, 220, 456, 478, 527, 733, 795
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 2 cut(s) 255, 469
BstSCI CCNGG 1 cut(s) 769
BstSNI TACGTA 1 cut(s) 504
BstUI CGCG 1 cut(s) 317
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 4 cut(s) 220, 527, 733, 795
BstXI CCANNNNNNTGG 1 cut(s) 747
BstYI RGATCY 4 cut(s) 220, 527, 733, 795
Bsu36I CCTNAGG 1 cut(s) 899
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 3 cut(s) 326, 640, 855
BtsI GCAGTG 2 cut(s) 71, 417
BtsIMutI CAGTG 2 cut(s) 71, 417
Cac8I GCNNGC 1 cut(s) 319
CaiI CAGNNNCTG 2 cut(s) 73, 770
CfoI GCGC 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 213, 713
Csp6I GTAC 4 cut(s) 19, 418, 505, 853
CviAII CATG 4 cut(s) 252, 466, 661, 747
CviQI GTAC 4 cut(s) 19, 418, 505, 853
DdeI CTNAG 3 cut(s) 237, 899, 978
DpnI GATC 7 cut(s) 177, 222, 458, 480, 529, 735, 797
DpnII GATC 7 cut(s) 175, 220, 456, 478, 527, 733, 795
DraI TTTAAA 1 cut(s) 879
Eam1104I CTCTTC 2 cut(s) 820, 828
EarI CTCTTC 2 cut(s) 820, 828
Eco105I TACGTA 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 213, 713
Eco47III AGCGCT 1 cut(s) 592
Eco81I CCTNAGG 1 cut(s) 899
Eco88I CYCGRG 2 cut(s) 728, 791
EcoRII CCWGG 1 cut(s) 769
FaeI CATG 4 cut(s) 255, 469, 664, 750
FatI CATG 4 cut(s) 251, 465, 660, 746
FauI CCCGC 1 cut(s) 322
FbaI TGATCA 1 cut(s) 456
FokI GGATG 3 cut(s) 313, 647, 842
FspBI CTAG 4 cut(s) 9, 263, 860, 960
GlaI GCGC 1 cut(s) 592
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 1 cut(s) 170
HapII CCGG 2 cut(s) 407, 632
HhaI GCGC 1 cut(s) 593
Hin1II CATG 4 cut(s) 255, 469, 664, 750
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 3 cut(s) 638, 843, 950
HpaII CCGG 2 cut(s) 407, 632
HphI GGTGA 2 cut(s) 416, 946
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 283, 643
Hpy188III TCNNGA 8 cut(s) 62, 460, 476, 551, 606, 632, 791, 793
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 315, 934
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4IV ACGT 2 cut(s) 503, 851
HpyCH4V TGCA 4 cut(s) 76, 164, 485, 908
HpyF3I CTNAG 3 cut(s) 237, 899, 978
HpySE526I ACGT 2 cut(s) 503, 851
Hsp92II CATG 4 cut(s) 255, 469, 664, 750
HspAI GCGC 1 cut(s) 591
Kpn2I TCCGGA 1 cut(s) 631
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 7 cut(s) 175, 220, 456, 478, 527, 733, 795
LpnPI CCDG 9 cut(s) 80, 105, 147, 196, 420, 631, 645, 756, 783
LweI GCATC 1 cut(s) 361
MaeI CTAG 4 cut(s) 9, 263, 860, 960
MaeII ACGT 2 cut(s) 503, 851
MaeIII GTNAC 2 cut(s) 69, 847
MalI GATC 7 cut(s) 177, 222, 458, 480, 529, 735, 797
MboI GATC 7 cut(s) 175, 220, 456, 478, 527, 733, 795
MboII GAAGA 5 cut(s) 300, 774, 837, 845, 977
MflI RGATCY 4 cut(s) 220, 527, 733, 795
MluCI AATT 4 cut(s) 433, 624, 944, 954
MmeI TCCRAC 3 cut(s) 306, 537, 630
MnlI CCTC 4 cut(s) 332, 437, 724, 815
MroI TCCGGA 1 cut(s) 631
MseI TTAA 4 cut(s) 201, 333, 620, 878
MslI CAYNNNNRTG 1 cut(s) 745
MspI CCGG 2 cut(s) 407, 632
MspR9I CCNGG 1 cut(s) 771
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 1 cut(s) 771
MvnI CGCG 1 cut(s) 317
NdeII GATC 7 cut(s) 175, 220, 456, 478, 527, 733, 795
NlaIII CATG 4 cut(s) 255, 469, 664, 750
NlaIV GGNNCC 2 cut(s) 90, 654
NmuCI GTSAC 2 cut(s) 69, 847
NspI RCATGY 2 cut(s) 255, 469
PaeR7I CTCGAG 1 cut(s) 791
PciI ACATGT 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PctI GAATGC 1 cut(s) 908
PfeI GAWTC 3 cut(s) 638, 843, 950
Pfl23II CGTACG 1 cut(s) 504
Ppu21I YACGTR 2 cut(s) 504, 852
PscI ACATGT 1 cut(s) 251
PsiI TTATAA 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 769
PspGI CCWGG 1 cut(s) 769
PspLI CGTACG 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 90, 654
PspPI GGNCC 2 cut(s) 213, 713
PstNI CAGNNNCTG 2 cut(s) 73, 770
PsuI RGATCY 4 cut(s) 220, 527, 733, 795
RsaI GTAC 4 cut(s) 20, 419, 506, 854
RsaNI GTAC 4 cut(s) 19, 418, 505, 853
RseI CAYNNNNRTG 1 cut(s) 745
SaqAI TTAA 4 cut(s) 201, 333, 620, 878
Sau3AI GATC 7 cut(s) 175, 220, 456, 478, 527, 733, 795
Sau96I GGNCC 2 cut(s) 213, 713
ScrFI CCNGG 1 cut(s) 771
SfaNI GCATC 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 791
SinI GGWCC 2 cut(s) 213, 713
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 1 cut(s) 745
SmlI CTYRAG 3 cut(s) 14, 551, 791
SmoI CTYRAG 3 cut(s) 14, 551, 791
SnaBI TACGTA 1 cut(s) 504
Sse9I AATT 4 cut(s) 433, 624, 944, 954
SsiI CCGC 2 cut(s) 216, 315
SspMI CTAG 4 cut(s) 9, 263, 860, 960
StyD4I CCNGG 1 cut(s) 769
TaaI ACNGT 1 cut(s) 447
TaiI ACGT 2 cut(s) 506, 854
TaqI TCGA 3 cut(s) 607, 792, 869
TasI AATT 4 cut(s) 433, 624, 944, 954
TatI WGTACW 2 cut(s) 18, 417
TfiI GAWTC 3 cut(s) 638, 843, 950
Tru1I TTAA 4 cut(s) 201, 333, 620, 878
Tru9I TTAA 4 cut(s) 201, 333, 620, 878
TscAI CASTG 2 cut(s) 78, 417
TseFI GTSAC 2 cut(s) 69, 847
Tsp45I GTSAC 2 cut(s) 69, 847
TspDTI ATGAA 5 cut(s) 488, 585, 651, 735, 953
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 2 cut(s) 78, 417
VpaK11BI GGWCC 2 cut(s) 213, 713
XceI RCATGY 2 cut(s) 255, 469
XhoI CTCGAG 1 cut(s) 791
XspI CTAG 4 cut(s) 9, 263, 860, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.