RLG00000031193

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000140
Physical Location & Seq
Forward (+)
2836265 .. 2838166
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031193

Sequence Viewer

Length: 543 bp
ATGGTCCATTACACAAAACGAATCACCGCGTACAATAGAGACAAATATCGGAACTATGGACGCAAGTTCTCTAAAACTAAACTCCAAAAGGAAGAAGTGGTTCTAGCTGATGCCCCAGAACTTCTTGCCCAGCTGCCTTTGTTCGATGATCTAATCACTTTGGAATTTGAATCCAGCGTAGACATTGGTAGCAAACCATTCTTGTCGATGCTCCAGAACTGTCCTTGTCTTCAAACTCTGATATTCCTTGGGGGGATTGCGATGTCCTCAAATGATGCTAAAGATGGGGTTCTGGAGCCTTTGCCTCCATGCTTCTTCTCACATCTGAAAGAGATTGAAGTCTATGAATTTTATGGAGACGAAGATCACATACTAGCATTGAAAGTTTTGCTAAAGAATGCAATGGCTTTGGAGAAGATGGCCATAATTTGGGGCACCGATTTTGAAGTGGGGCTAGAGAGGAAAAGTGATTTTCACAAAGAGTTATTTGATCTCCCAAGAGTATCAGAAAGCTGTGAAGTTGTTCTTGAACTTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

181

Amino Acids

20.58

Weight (kDa)

4.96

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 101 - 142 4.1e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 429
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 2 cut(s) 164, 347
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 429
AgsI TTSAA 6 cut(s) 170, 233, 338, 382, 446, 530
AluBI AGCT 3 cut(s) 107, 133, 513
AluI AGCT 3 cut(s) 107, 133, 513
Alw26I GTCTC 2 cut(s) 33, 351
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 164, 347
Asp700I GAANNNNTTC 2 cut(s) 99, 522
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 422
BanI GGYRCC 1 cut(s) 434
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 278, 412
BcoDI GTCTC 2 cut(s) 33, 351
BfaI CTAG 3 cut(s) 104, 374, 455
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 297, 436
BmsI GCATC 3 cut(s) 100, 198, 265
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 2 cut(s) 197, 314
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 429
BseMI GCAATG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 422
BshNI GGYRCC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 429
BsmAI GTCTC 2 cut(s) 33, 351
BsmBI CGTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 437
Bsp143I GATC 3 cut(s) 148, 364, 490
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 422
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 297, 436
BspT107I GGYRCC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 3 cut(s) 148, 364, 490
BssT1I CCWWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 221
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 3 cut(s) 151, 367, 493
BstMAI GTCTC 2 cut(s) 33, 351
BstMBI GATC 3 cut(s) 148, 364, 490
BstSLI GKGCMC 1 cut(s) 437
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 422
BtgZI GCGATG 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 309
CviJI RGCY 7 cut(s) 107, 133, 298, 407, 422, 454, 513
CviKI_1 RGCY 7 cut(s) 107, 133, 298, 407, 422, 454, 513
CviQI GTAC 1 cut(s) 31
DpnI GATC 3 cut(s) 150, 366, 492
DpnII GATC 3 cut(s) 148, 364, 490
EaeI YGGCCR 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 1 cut(s) 312
FaiI YATR 6 cut(s) 57, 310, 345, 354, 371, 425
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 1 cut(s) 308
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 3 cut(s) 104, 374, 455
GluI GCNGC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 2 cut(s) 197, 314
HaeIII GGCC 1 cut(s) 422
HgaI GACGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 312
HinfI GANTC 2 cut(s) 21, 170
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 51, 240, 327, 508
Hpy188III TCNNGA 3 cut(s) 214, 293, 527
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 401
Hsp92II CATG 1 cut(s) 312
Kzo9I GATC 3 cut(s) 148, 364, 490
LmnI GCTCC 2 cut(s) 216, 295
LpnPI CCDG 5 cut(s) 129, 143, 187, 227, 278
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 3 cut(s) 100, 198, 265
MaeI CTAG 3 cut(s) 104, 374, 455
MalI GATC 3 cut(s) 150, 366, 492
MboI GATC 3 cut(s) 148, 364, 490
MboII GAAGA 5 cut(s) 104, 221, 307, 374, 427
MhlI GDGCHC 1 cut(s) 437
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 3 cut(s) 164, 347, 426
MluNI TGGCCA 1 cut(s) 422
MnlI CCTC 3 cut(s) 277, 315, 453
Mox20I TGGCCA 1 cut(s) 422
MroXI GAANNNNTTC 2 cut(s) 99, 522
MscI TGGCCA 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 403
MvnI CGCG 1 cut(s) 29
NdeII GATC 3 cut(s) 148, 364, 490
NlaIII CATG 1 cut(s) 312
NlaIV GGNNCC 2 cut(s) 297, 436
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 2 cut(s) 99, 522
PfeI GAWTC 2 cut(s) 21, 170
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 297, 436
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 3 cut(s) 148, 364, 490
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 437
SetI ASST 3 cut(s) 109, 135, 515
SfaNI GCATC 3 cut(s) 100, 198, 265
SinI GGWCC 1 cut(s) 4
Sse9I AATT 3 cut(s) 164, 347, 426
SsiI CCGC 1 cut(s) 27
SspMI CTAG 3 cut(s) 104, 374, 455
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 144, 206
TasI AATT 3 cut(s) 164, 347, 426
TfiI GAWTC 2 cut(s) 21, 170
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 360
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 164, 347
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 2 cut(s) 99, 522
XspI CTAG 3 cut(s) 104, 374, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.