Rw5G003130

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000140
Physical Location & Seq
Reverse (-)
2900088 .. 2901019
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G003130.1

Sequence Viewer

Length: 708 bp
ATGATCGAAGGAGGTGTGGAAGTTGCGAGAGCTTCAAAATCTTCTGATGGATGTCAGATGATGGTATTTGGAGATAATCTCAAACAGTTTAATTATAAGGGTGAGTTCCTAAATGAATGTTGCATTTGCAATTCATCCTCACTAAATAAGGCTAAAATTCGTTCCTCCAAGAGATTGAGACGTACTGCTTACCGTTTGTATAAGCTTCTTAGAAGGCTCTCTACTGTGGAGCATCTAACTATCTCTTATTATATCTTTGAGGTGGTTCTAGATGATGCACCAGAACTTCTTGCCCAGCTGCCTTTGTTCAATGATCTAATCACTTTGGAATTTGAAGGAAGTGTAAACATTGGTAGCAAACCATTCTTGTCGATGCTCCACAACTGTCCTTGTCTTCAAACTTTGATATTCCTTGAGGGGATTGAGGAGTCCTTAAATGTTGCTAAAGATGGAGTTTTGGAGCCTTTGCCTCCATGCTTCCTCTCACGTCTAAAAGAGATTGAAGTCTATGAATTTTATGGAGATGAGGATCACATACATGCATTGAAAGTTTTTCTAAAGAATGCAATGGTTTTGGAGAATATGACCATAACTTGGGGCACGGATTTTGAAGTGGGGCTAGCGAGGAAAAGTGATGTTCATAAACAGTTATTCAATCTCCCTAGAGTATCAAAAAGCTGTGAAGTTGTTCTTGAACTTCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

235

Amino Acids

26.72

Weight (kDa)

5.63

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 156 - 197 5.3e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AccB7I CCANNNNNTGG 1 cut(s) 594
AclWI GGATC 1 cut(s) 537
AcsI RAATTY 3 cut(s) 156, 329, 512
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 594
AgsI TTSAA 9 cut(s) 36, 310, 335, 398, 503, 547, 611, 655, 695
AjiI CACGTC 1 cut(s) 488
AluBI AGCT 4 cut(s) 32, 205, 298, 678
AluI AGCT 4 cut(s) 32, 205, 298, 678
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 537
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 3 cut(s) 156, 329, 512
Asp700I GAANNNNTTC 1 cut(s) 687
AsuHPI GGTGA 1 cut(s) 113
AsuNHI GCTAGC 1 cut(s) 619
BaeGI GKGCMC 1 cut(s) 602
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BbsI GAAGAC 1 cut(s) 386
BbvI GCAGC 1 cut(s) 285
BccI CCATC 3 cut(s) 41, 55, 443
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 3 cut(s) 269, 620, 663
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
BmgBI CACGTC 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 462
BmsI GCATC 3 cut(s) 241, 265, 363
BmtI GCTAGC 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 386
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpuEI CTTGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 594
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 528
BseGI GGATG 2 cut(s) 56, 134
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 594
BseMI GCAATG 1 cut(s) 573
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 594
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 602
Bsp143I GATC 3 cut(s) 3, 313, 529
BspLI GGNNCC 1 cut(s) 462
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 1 cut(s) 537
BsrDI GCAATG 1 cut(s) 573
BssMI GATC 3 cut(s) 3, 313, 529
Bst4CI ACNGT 5 cut(s) 87, 194, 226, 386, 648
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 56, 134
BstKTI GATC 3 cut(s) 6, 316, 532
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 3, 313, 529
BstNSI RCATGY 1 cut(s) 542
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 386
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 2 cut(s) 56, 134
Cac8I GCNNGC 1 cut(s) 621
Csp6I GTAC 1 cut(s) 183
CviAII CATG 2 cut(s) 474, 539
CviJI RGCY 8 cut(s) 32, 152, 205, 217, 298, 463, 619, 678
CviKI_1 RGCY 8 cut(s) 32, 152, 205, 217, 298, 463, 619, 678
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 209
DpnI GATC 3 cut(s) 5, 315, 531
DpnII GATC 3 cut(s) 3, 313, 529
EcoT22I ATGCAT 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 477, 542
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FatI CATG 2 cut(s) 473, 538
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 2 cut(s) 63, 121
Fsp4HI GCNGC 1 cut(s) 299
FspBI CTAG 3 cut(s) 269, 620, 663
GluI GCNGC 1 cut(s) 299
GsaI CCCAGC 1 cut(s) 298
Hin1II CATG 2 cut(s) 477, 542
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 428
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 46, 57
Hpy188III TCNNGA 2 cut(s) 269, 692
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 207, 329
HpyCH4III ACNGT 5 cut(s) 87, 194, 226, 386, 648
HpyCH4IV ACGT 2 cut(s) 181, 487
HpyCH4V TGCA 5 cut(s) 123, 129, 278, 542, 566
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 2 cut(s) 181, 487
Hsp92II CATG 2 cut(s) 477, 542
Kzo9I GATC 3 cut(s) 3, 313, 529
LmnI GCTCC 3 cut(s) 229, 381, 460
LpnPI CCDG 3 cut(s) 294, 308, 686
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 3 cut(s) 241, 265, 363
MaeI CTAG 3 cut(s) 269, 620, 663
MaeII ACGT 2 cut(s) 181, 487
MalI GATC 3 cut(s) 5, 315, 531
MboI GATC 3 cut(s) 3, 313, 529
MboII GAAGA 2 cut(s) 33, 386
MhlI GDGCHC 1 cut(s) 602
MluCI AATT 5 cut(s) 91, 130, 156, 329, 512
MlyI GAGTC 1 cut(s) 437
Mph1103I ATGCAT 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 687
MseI TTAA 2 cut(s) 90, 434
MslI CAYNNNNRTG 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 568
NdeII GATC 3 cut(s) 3, 313, 529
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 2 cut(s) 477, 542
NlaIV GGNNCC 1 cut(s) 462
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 542
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 1 cut(s) 687
PflMI CCANNNNNTGG 1 cut(s) 594
PkrI GCNGC 1 cut(s) 300
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PsiI TTATAA 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 537
SaqAI TTAA 2 cut(s) 90, 434
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 3 cut(s) 3, 313, 529
SchI GAGTC 1 cut(s) 437
SduI GDGCHC 1 cut(s) 602
SetI ASST 8 cut(s) 16, 34, 184, 207, 264, 300, 490, 680
SfaNI GCATC 3 cut(s) 241, 265, 363
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 5 cut(s) 91, 130, 156, 329, 512
SspMI CTAG 3 cut(s) 269, 620, 663
TaaI ACNGT 5 cut(s) 87, 194, 226, 386, 648
TaiI ACGT 2 cut(s) 184, 490
TaqI TCGA 2 cut(s) 6, 371
TasI AATT 5 cut(s) 91, 130, 156, 329, 512
Tru1I TTAA 2 cut(s) 90, 434
Tru9I TTAA 2 cut(s) 90, 434
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 4 cut(s) 123, 129, 525, 629
TspGWI ACGGA 1 cut(s) 617
Van91I CCANNNNNTGG 1 cut(s) 594
XapI RAATTY 3 cut(s) 156, 329, 512
XbaI TCTAGA 1 cut(s) 268
XceI RCATGY 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 3 cut(s) 269, 620, 663
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.