Rroxscaffold_1G00011270

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000140
Physical Location & Seq
Reverse (-)
14258584 .. 14260809
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011270.1

Sequence Viewer

Length: 1389 bp
ATGGATGCAAGTTCTCAAATGCTAAAACCCAAAAGGCAGAAGTTGGATGGAGGAGAAGAGAATCGAGAGATGGAAGGAGGCATGAAGAGTTTAAGCAATTTACCTGATGTGGTTCTTGAAAAAATTCTCTCCTTGCTTTCGACAGAGAATGCTATCAGAACAAGCATACTTTCGAAAAGATGGGAATACCTATGGACATCAATTCCCAGACTCAACTTTTTTCAAGGGACTCTTAATAAGAGAACTGCCATGGTGAATGCTGTGGAAAGAGCACTTATGCTTCGTCGTGGTGTTGATATAAAAAAGTTTACTCTTTGCTTTGAAGTGCTAGGTGATGCATCTTTTCTTAATCCATGGATCTCTGCCATAGTAAGGCTCAATGTTGAAGAGCTTTTTCTTGGCCTGTATAGCTTGAATGGACCGCTTTGTTTGCCTCATTCTTTGTTTAGTTCCTCAACACTGAAGGACTTGCAACTAGATGTGCCCTTTATTTTCAAAGTTCCTTCTACTGTTTGTCTCTCAAGTTTAAGGAGATTGACACTTAGGTCTGTGGTGTTTTCCGATGAATACTCAACCCAGCAACTCTTTTCTGGTTGTCCAGTTCTTCAGAAATTATCTTTACATAACTGCAATTGGGGGAATCTCAAGTTTGTGAGTATTTGTGCTCCAAAGCTTTTGAGATTGATCATAAATGAAAGTGATTTGCAAATTTCCAGAGATTCAGGCGGTTGCCAGATTATGGTGTTTGGAGTTGGCCTTACATATTTTTCTTATGCGGGTGAATTCCTAAATGAATATACCTTTCATAGCTCATCAGTAAATCAGGCTGAGATTAATGTTTGTCCTACTAAGATGTCGAGACATTTGAGTTACCGGTTGTATAAGCTTTTTAGAGGGCTCTCTAGTTTGAAGATCCTAACTACCTGTTCTTATTTCTTTGAGGTTGTTCGGGCTAATGCATCAGAGCTTCTTGCCCAGATGCCCTTGTTCAATGATCTAACCACATTGGTATTGGATTCAGTACAAGTAGATCTTGGTTGTAAAGGACTATTGAGGATGCTCCAAAACTGTCCCTGTCTTCAAACTCTCGTATTCAGTGAGGGGATTAGCCTGTCCTCCGGTGATGCAAGTGATGATGGGGTTTTGGAGCCACTGCCTCCTTGTTTCTTCACAAGTCTCAAAGAGATTAAAGTCTATGCATTTTATGGAGATGAGGGTGAAATTTATGCAGTAAAGAGTTTGCTTAAGACTGCAATGGTATTGGAGAAGGTGATTGTAAATTTCTCTAAGTCTTTTGAAGGAGGACCAGAGGAGATAAATGATGTTGGCAAACAGTTGAGTGATTTCCCAATGGGGTCAGAAATCTGTGAAATTGTTCTTCAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

462

Amino Acids

51.74

Weight (kDa)

5.97

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 70 2.9e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 96 - 430 2.5e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 117 - 234 3.9e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 739
AciI CCGC 3 cut(s) 422, 726, 776
AclWI GGATC 2 cut(s) 365, 907
AcsI RAATTY 5 cut(s) 123, 708, 782, 1221, 1279
AcuI CTGAAG 3 cut(s) 482, 590, 1364
AfaI GTAC 2 cut(s) 1023, 1385
AfiI CCNNNNNNNGG 2 cut(s) 372, 739
AflII CTTAAG 1 cut(s) 1244
AgeI ACCGGT 1 cut(s) 873
AluBI AGCT 6 cut(s) 391, 411, 673, 810, 886, 967
AluI AGCT 6 cut(s) 391, 411, 673, 810, 886, 967
Alw21I GWGCWC 2 cut(s) 274, 667
Alw26I GTCTC 3 cut(s) 521, 853, 1181
AlwI GGATC 2 cut(s) 365, 907
AoxI GGCC 2 cut(s) 400, 754
ApoI RAATTY 5 cut(s) 123, 708, 782, 1221, 1279
AseI ATTAAT 1 cut(s) 834
AsiGI ACCGGT 1 cut(s) 873
Asp700I GAANNNNTTC 2 cut(s) 123, 1374
AspS9I GGNCC 2 cut(s) 419, 1304
AsuHPI GGTGA 6 cut(s) 265, 344, 791, 1133, 1229, 1282
AsuII TTCGAA 1 cut(s) 173
AvaII GGWCC 2 cut(s) 419, 1304
BaeGI GKGCMC 1 cut(s) 486
BanII GRGCYC 1 cut(s) 900
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 2 cut(s) 274, 667
BccI CCATC 4 cut(s) 41, 64, 174, 1130
BclI TGATCA 1 cut(s) 684
BcoDI GTCTC 3 cut(s) 521, 853, 1181
BfaI CTAG 3 cut(s) 329, 476, 903
BfrI CTTAAG 1 cut(s) 1244
BglII AGATCT 1 cut(s) 1030
BmcAI AGTACT 1 cut(s) 1385
Bme18I GGWCC 2 cut(s) 419, 1304
BmgT120I GGNCC 2 cut(s) 419, 1304
BmiI GGNNCC 1 cut(s) 1149
BmsI GCATC 6 cut(s) 325, 347, 968, 969, 1047, 1114
BpiI GAAGAC 1 cut(s) 1070
Bpu14I TTCGAA 1 cut(s) 173
BpuEI CTTGAG 2 cut(s) 505, 629
BsaJI CCNNGG 2 cut(s) 249, 353
BsaWI WCCGGW 2 cut(s) 873, 1118
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 739
Bse118I RCCGGY 1 cut(s) 873
Bse1I ACTGG 1 cut(s) 599
Bse3DI GCAATG 1 cut(s) 1260
BseDI CCNNGG 2 cut(s) 249, 353
BseGI GGATG 3 cut(s) 10, 52, 1062
BseLI CCNNNNNNNGG 2 cut(s) 372, 739
BseMI GCAATG 1 cut(s) 1260
BseMII CTCAG 1 cut(s) 819
BseNI ACTGG 1 cut(s) 599
BseRI GAGGAG 2 cut(s) 66, 1325
BseSI GKGCMC 1 cut(s) 486
BseYI CCCAGC 1 cut(s) 576
BshFI GGCC 2 cut(s) 402, 756
BshTI ACCGGT 1 cut(s) 873
BsiHKAI GWGCWC 2 cut(s) 274, 667
BsiSI CCGG 2 cut(s) 874, 1119
BslFI GGGAC 2 cut(s) 241, 1056
BslI CCNNNNNNNGG 2 cut(s) 372, 739
BsmAI GTCTC 3 cut(s) 521, 853, 1181
BsmFI GGGAC 2 cut(s) 241, 1056
BsmI GAATGC 2 cut(s) 154, 262
BsnI GGCC 2 cut(s) 402, 756
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 4 cut(s) 274, 486, 667, 900
Bsp143I GATC 5 cut(s) 357, 684, 912, 994, 1030
Bsp19I CCATGG 2 cut(s) 249, 353
BspACI CCGC 3 cut(s) 422, 726, 776
BspANI GGCC 2 cut(s) 402, 756
BspCNI CTCAG 1 cut(s) 820
BspLI GGNNCC 1 cut(s) 1149
BspPI GGATC 2 cut(s) 365, 907
BspQI GCTCTTC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 1244
BsrDI GCAATG 1 cut(s) 1260
BsrFI RCCGGY 1 cut(s) 873
BsrI ACTGG 1 cut(s) 599
BssAI RCCGGY 1 cut(s) 873
BssECI CCNNGG 2 cut(s) 249, 353
BssMI GATC 5 cut(s) 357, 684, 912, 994, 1030
BssT1I CCWWGG 2 cut(s) 249, 353
Bst4CI ACNGT 3 cut(s) 511, 1070, 1335
Bst6I CTCTTC 3 cut(s) 51, 80, 381
BstAFI CTTAAG 1 cut(s) 1244
BstBI TTCGAA 1 cut(s) 173
BstDEI CTNAG 4 cut(s) 542, 828, 849, 1287
BstDSI CCRYGG 2 cut(s) 249, 353
BstF5I GGATG 3 cut(s) 10, 52, 1062
BstKTI GATC 5 cut(s) 360, 687, 915, 997, 1033
BstMAI GTCTC 3 cut(s) 521, 853, 1181
BstMBI GATC 5 cut(s) 357, 684, 912, 994, 1030
BstMWI GCNNNNNNNGC 2 cut(s) 408, 430
BstSLI GKGCMC 1 cut(s) 486
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 3 cut(s) 357, 912, 1030
BstYI RGATCY 3 cut(s) 357, 912, 1030
BsuRI GGCC 2 cut(s) 402, 756
BtgI CCRYGG 2 cut(s) 249, 353
BtsCI GGATG 3 cut(s) 10, 52, 1062
BtsI GCAGTG 1 cut(s) 1151
BtsIMutI CAGTG 3 cut(s) 458, 1102, 1151
Cfr10I RCCGGY 1 cut(s) 873
Cfr13I GGNCC 2 cut(s) 419, 1304
Csp6I GTAC 2 cut(s) 1022, 1384
CspAI ACCGGT 1 cut(s) 873
CviAII CATG 3 cut(s) 82, 250, 354
CviQI GTAC 2 cut(s) 1022, 1384
DdeI CTNAG 4 cut(s) 542, 828, 849, 1287
DpnI GATC 5 cut(s) 359, 686, 914, 996, 1032
DpnII GATC 5 cut(s) 357, 684, 912, 994, 1030
DrdI GACNNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 1 cut(s) 544
Eam1104I CTCTTC 3 cut(s) 51, 80, 381
EarI CTCTTC 3 cut(s) 51, 80, 381
Eco130I CCWWGG 2 cut(s) 249, 353
Eco24I GRGCYC 1 cut(s) 900
Eco47I GGWCC 2 cut(s) 419, 1304
Eco57I CTGAAG 3 cut(s) 482, 590, 1364
EcoRI GAATTC 1 cut(s) 782
EcoT14I CCWWGG 2 cut(s) 249, 353
EcoT22I ATGCAT 3 cut(s) 340, 961, 1201
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 2 cut(s) 249, 353
FaeI CATG 3 cut(s) 85, 253, 357
FalI AAGNNNNNCTT 4 cut(s) 216, 248, 1017, 1049
FaqI GGGAC 2 cut(s) 241, 1056
FatI CATG 3 cut(s) 81, 249, 353
FauI CCCGC 1 cut(s) 769
FbaI TGATCA 1 cut(s) 684
FokI GGATG 3 cut(s) 17, 59, 1069
FriOI GRGCYC 1 cut(s) 900
FspBI CTAG 3 cut(s) 329, 476, 903
GsaI CCCAGC 1 cut(s) 580
HaeIII GGCC 2 cut(s) 402, 756
HapII CCGG 2 cut(s) 874, 1119
Hin1II CATG 3 cut(s) 85, 253, 357
HindIII AAGCTT 2 cut(s) 671, 884
HinfI GANTC 6 cut(s) 61, 210, 229, 640, 719, 1016
HpaII CCGG 2 cut(s) 874, 1119
HphI GGTGA 6 cut(s) 265, 344, 791, 1133, 1229, 1282
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 5 cut(s) 158, 562, 609, 964, 1360
Hpy188III TCNNGA 4 cut(s) 65, 116, 714, 858
Hpy8I GTNNAC 1 cut(s) 309
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 5 cut(s) 68, 457, 513, 1261, 1292
HpyCH4III ACNGT 3 cut(s) 511, 1070, 1335
HpyF10VI GCNNNNNNNGC 2 cut(s) 408, 430
HpyF3I CTNAG 4 cut(s) 542, 828, 849, 1287
Hsp92II CATG 3 cut(s) 85, 253, 357
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 5 cut(s) 357, 684, 912, 994, 1030
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 3 cut(s) 670, 1065, 1147
LweI GCATC 6 cut(s) 325, 347, 968, 969, 1047, 1114
MaeI CTAG 3 cut(s) 329, 476, 903
MaeIII GTNAC 1 cut(s) 869
MalI GATC 5 cut(s) 359, 686, 914, 996, 1032
MboI GATC 5 cut(s) 357, 684, 912, 994, 1030
MboII GAAGA 8 cut(s) 68, 97, 398, 596, 922, 1070, 1159, 1370
MfeI CAATTG 1 cut(s) 631
MflI RGATCY 3 cut(s) 357, 912, 1030
MhlI GDGCHC 4 cut(s) 274, 486, 667, 900
MlyI GAGTC 2 cut(s) 204, 223
MmeI TCCRAC 1 cut(s) 24
Mph1103I ATGCAT 3 cut(s) 340, 961, 1201
MroXI GAANNNNTTC 2 cut(s) 123, 1374
MseI TTAA 7 cut(s) 92, 234, 348, 527, 834, 1188, 1245
MspCI CTTAAG 1 cut(s) 1244
MspI CCGG 2 cut(s) 874, 1119
MunI CAATTG 1 cut(s) 631
Mva1269I GAATGC 2 cut(s) 154, 262
MwoI GCNNNNNNNGC 2 cut(s) 408, 430
NcoI CCATGG 2 cut(s) 249, 353
NdeII GATC 5 cut(s) 357, 684, 912, 994, 1030
NlaIII CATG 3 cut(s) 85, 253, 357
NlaIV GGNNCC 1 cut(s) 1149
NsiI ATGCAT 3 cut(s) 340, 961, 1201
NspV TTCGAA 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 2 cut(s) 154, 262
PdmI GAANNNNTTC 2 cut(s) 123, 1374
PfeI GAWTC 4 cut(s) 61, 640, 719, 1016
PflMI CCANNNNNTGG 1 cut(s) 739
PinAI ACCGGT 1 cut(s) 873
PleI GAGTC 2 cut(s) 204, 223
PpsI GAGTC 2 cut(s) 204, 223
PshBI ATTAAT 1 cut(s) 834
PspFI CCCAGC 1 cut(s) 576
PspN4I GGNNCC 1 cut(s) 1149
PspPI GGNCC 2 cut(s) 419, 1304
PsuI RGATCY 3 cut(s) 357, 912, 1030
RsaI GTAC 2 cut(s) 1023, 1385
RsaNI GTAC 2 cut(s) 1022, 1384
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 7 cut(s) 92, 234, 348, 527, 834, 1188, 1245
Sau3AI GATC 5 cut(s) 357, 684, 912, 994, 1030
Sau96I GGNCC 2 cut(s) 419, 1304
ScaI AGTACT 1 cut(s) 1385
SchI GAGTC 2 cut(s) 204, 223
SduI GDGCHC 4 cut(s) 274, 486, 667, 900
SfaNI GCATC 6 cut(s) 325, 347, 968, 969, 1047, 1114
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 2 cut(s) 419, 1304
SmlI CTYRAG 3 cut(s) 520, 644, 1244
SmoI CTYRAG 3 cut(s) 520, 644, 1244
SsiI CCGC 3 cut(s) 422, 726, 776
SspMI CTAG 3 cut(s) 329, 476, 903
StyI CCWWGG 2 cut(s) 249, 353
TaaI ACNGT 3 cut(s) 511, 1070, 1335
TaqI TCGA 4 cut(s) 64, 140, 173, 857
TatI WGTACW 2 cut(s) 1021, 1383
TfiI GAWTC 4 cut(s) 61, 640, 719, 1016
Tru1I TTAA 7 cut(s) 92, 234, 348, 527, 834, 1188, 1245
Tru9I TTAA 7 cut(s) 92, 234, 348, 527, 834, 1188, 1245
TscAI CASTG 3 cut(s) 465, 1102, 1158
TspDTI ATGAA 5 cut(s) 98, 579, 708, 794, 807
TspRI CASTG 3 cut(s) 465, 1102, 1158
Van91I CCANNNNNTGG 1 cut(s) 739
Vha464I CTTAAG 1 cut(s) 1244
VpaK11BI GGWCC 2 cut(s) 419, 1304
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 5 cut(s) 123, 708, 782, 1221, 1279
XcmI CCANNNNNNNNNTGG 1 cut(s) 1009
XmnI GAANNNNTTC 2 cut(s) 123, 1374
XspI CTAG 3 cut(s) 329, 476, 903
ZrmI AGTACT 1 cut(s) 1385
Zsp2I ATGCAT 3 cut(s) 340, 961, 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.