Rorug01G0438500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000140
Physical Location & Seq
Reverse (-)
53723939 .. 53726293
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0438500.1

Sequence Viewer

Length: 882 bp
ATGGGGGCTGGTTCCTCTATGTCTTCAATGGATACCAGTAGATCAGGTTCTCCCGATCATCCTCCGGATCAAACTAAGCCTGGTCTCGGAGACCTACCTGAAAGCTGTATCTCTTACATTCTTTTGTATTTGGATCCGCCGGAGATCTGTAAACTTGCGCAGGTGAATAGGGTTTTCCGGGCTGCTTCATCTACTGATTTTGTCTGGCAATCAAAGCTCCCATCAAACTATAAGTTTCTAGTCGAAAAATCATTAGTCCTCGGCGAACATAATAGTAACCGTATTCCGAAGAAAGATATATACGCAAGATTATGTCGGCCAAATCGTTTTGACAATGGCACCAAGGAAGTTTGGTTGGACAAGAGTTGTGGATCACATCCACAGGTTTGTTTGTCCATTTCATCAAAGGCATTGCGGATAACAGGAATAGATGATCGAAGATATTGGAGTAATATTCCAACCGAGGAATCGAGGTTTAACAGAGTTGCATATCTTAAACAAATCTGGTGGCTTGAAGCACAAGGGGAACTAGAGTTCGAGTTTCCACCGGGAAACTATAGCCTATATTTTCGGATTCAGCTTGGCAGGACTTGTTCAGGAAGATTCGGCCGACGAGTATGCAACACTGATCAAGTGCATGGCTGGGACATTAAGCCCGTCCGATTCCACTTATCAACGTCGGACGGCCAGCACGCTTTATCGGAGTGTTATTTGCATGAACGATGCAGCTGGGTTCACTACCATGTTGGTGATTTCGTCAGCAACAGTCCTAAGCCGATGAAGATCAAATTTTCAGTGACCCAAATTGATTGTACACACACCAAAGGTGGCCTCTGCTTAGACTCCGTGTTAATATGCCCAACCAAGTTTAGGAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

293

Amino Acids

33.37

Weight (kDa)

8.87

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 30 - 71 4.4e-08 F-box-like
PP2 PF14299 129 - 287 2.4e-38 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
Acc16I TGCGCA 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 2 cut(s) 137, 415
AclWI GGATC 4 cut(s) 75, 128, 141, 379
AcoI YGGCCR 3 cut(s) 317, 607, 685
AcsI RAATTY 1 cut(s) 788
AfaI GTAC 1 cut(s) 814
AfiI CCNNNNNNNGG 2 cut(s) 86, 870
AgsI TTSAA 2 cut(s) 27, 515
AjnI CCWGG 1 cut(s) 79
AloI GAACNNNNNNTCC 2 cut(s) 518, 550
AluBI AGCT 4 cut(s) 105, 217, 580, 729
AluI AGCT 4 cut(s) 105, 217, 580, 729
Alw26I GTCTC 2 cut(s) 84, 89
AlwI GGATC 4 cut(s) 75, 128, 141, 379
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 4 cut(s) 317, 607, 685, 829
ApeKI GCWGC 2 cut(s) 182, 726
ApoI RAATTY 1 cut(s) 788
AspLEI GCGC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 179, 549
AsuHPI GGTGA 2 cut(s) 175, 761
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 169, 738
BccI CCATC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 700
BcgI CGANNNNNNTGC 2 cut(s) 600, 634
BciT130I CCWGG 1 cut(s) 81
BciVI GTATCC 1 cut(s) 25
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 2 cut(s) 179, 549
BcoDI GTCTC 2 cut(s) 84, 89
BfaI CTAG 2 cut(s) 239, 530
BfmI CTRYAG 1 cut(s) 556
BfuAI ACCTGC 1 cut(s) 151
BfuI GTATCC 1 cut(s) 25
BglII AGATCT 1 cut(s) 144
BisI GCNGC 2 cut(s) 183, 727
BlsI GCNGC 2 cut(s) 184, 728
Bme1390I CCNGG 3 cut(s) 81, 179, 549
BmiI GGNNCC 3 cut(s) 13, 135, 340
BmrFI CCNGG 3 cut(s) 81, 179, 549
BmsI GCATC 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 771
BpuMI CCSGG 2 cut(s) 179, 549
BsaBI GATNNNNATC 1 cut(s) 782
BsaI GGTCTC 2 cut(s) 84, 89
BsaJI CCNNGG 3 cut(s) 259, 342, 462
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 870
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 410
Bse8I GATNNNNATC 1 cut(s) 782
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 259, 342, 462
BseGI GGATG 2 cut(s) 58, 376
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 2 cut(s) 86, 870
BseMI GCAATG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 36
BseX3I CGGCCG 1 cut(s) 607
BseXI GCAGC 2 cut(s) 169, 738
BseYI CCCAGC 2 cut(s) 642, 729
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 4 cut(s) 319, 609, 687, 831
BshNI GGYRCC 1 cut(s) 338
BsiEI CGRYCG 1 cut(s) 610
BsiSI CCGG 4 cut(s) 65, 140, 178, 548
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 2 cut(s) 86, 870
BsmAI GTCTC 2 cut(s) 84, 89
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 4 cut(s) 319, 609, 687, 831
Bso31I GGTCTC 2 cut(s) 84, 89
Bsp13I TCCGGA 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 812
Bsp143I GATC 9 cut(s) 41, 55, 67, 133, 144, 371, 433, 628, 783
BspACI CCGC 2 cut(s) 137, 415
BspANI GGCC 4 cut(s) 319, 609, 687, 831
BspEI TCCGGA 1 cut(s) 64
BspLI GGNNCC 3 cut(s) 13, 135, 340
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 4 cut(s) 75, 128, 141, 379
BspT107I GGYRCC 1 cut(s) 338
BspTNI GGTCTC 2 cut(s) 84, 89
BsrDI GCAATG 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 812
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 3 cut(s) 259, 342, 462
BssMI GATC 9 cut(s) 41, 55, 67, 133, 144, 371, 433, 628, 783
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 281, 767
BstAUI TGTACA 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 689, 693
BstDEI CTNAG 3 cut(s) 75, 771, 838
BstF5I GGATG 2 cut(s) 58, 376
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 9 cut(s) 44, 58, 70, 136, 147, 374, 436, 631, 786
BstMAI GTCTC 2 cut(s) 84, 89
BstMBI GATC 9 cut(s) 41, 55, 67, 133, 144, 371, 433, 628, 783
BstMCI CGRYCG 1 cut(s) 610
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 3 cut(s) 79, 177, 547
BstSFI CTRYAG 1 cut(s) 556
BstV1I GCAGC 2 cut(s) 169, 738
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 2 cut(s) 133, 144
BstYI RGATCY 2 cut(s) 133, 144
BstZI CGGCCG 1 cut(s) 607
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 4 cut(s) 319, 609, 687, 831
BtsCI GGATG 2 cut(s) 58, 376
BtsIMutI CAGTG 2 cut(s) 624, 801
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 689, 693
CfoI GCGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 813
CspCI CAANNNNNGTGG 4 cut(s) 349, 384, 488, 523
CviAII CATG 3 cut(s) 638, 716, 743
CviQI GTAC 1 cut(s) 813
DdeI CTNAG 3 cut(s) 75, 771, 838
DpnI GATC 9 cut(s) 43, 57, 69, 135, 146, 373, 435, 630, 785
DpnII GATC 9 cut(s) 41, 55, 67, 133, 144, 371, 433, 628, 783
EaeI YGGCCR 3 cut(s) 317, 607, 685
EagI CGGCCG 1 cut(s) 607
EciI GGCGGA 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 2 cut(s) 84, 89
Eco52I CGGCCG 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 3 cut(s) 641, 719, 746
FaqI GGGAC 1 cut(s) 659
FatI CATG 3 cut(s) 637, 715, 742
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 2 cut(s) 183, 727
FokI GGATG 2 cut(s) 45, 363
Fsp4HI GCNGC 2 cut(s) 183, 727
FspBI CTAG 2 cut(s) 239, 530
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 183, 727
GsaI CCCAGC 2 cut(s) 646, 733
HaeIII GGCC 4 cut(s) 319, 609, 687, 831
HapII CCGG 4 cut(s) 65, 140, 178, 548
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 641, 719, 746
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 5 cut(s) 467, 574, 603, 663, 842
HpaII CCGG 4 cut(s) 65, 140, 178, 548
HphI GGTGA 2 cut(s) 175, 761
Hpy166II GTNNAC 3 cut(s) 152, 736, 815
Hpy188I TCNGA 6 cut(s) 89, 288, 573, 662, 682, 703
Hpy188III TCNNGA 3 cut(s) 53, 65, 597
Hpy8I GTNNAC 3 cut(s) 152, 736, 815
Hpy99I CGWCG 2 cut(s) 615, 682
HpyCH4III ACNGT 2 cut(s) 281, 767
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 5 cut(s) 488, 621, 637, 715, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 3 cut(s) 75, 771, 838
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 3 cut(s) 641, 719, 746
HspAI GCGC 1 cut(s) 158
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 9 cut(s) 41, 55, 67, 133, 144, 371, 433, 628, 783
LmnI GCTCC 1 cut(s) 222
Lsp1109I GCAGC 2 cut(s) 169, 738
LweI GCATC 1 cut(s) 713
MaeI CTAG 2 cut(s) 239, 530
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 2 cut(s) 275, 796
MalI GATC 9 cut(s) 43, 57, 69, 135, 146, 373, 435, 630, 785
MboI GATC 9 cut(s) 41, 55, 67, 133, 144, 371, 433, 628, 783
MboII GAAGA 5 cut(s) 15, 301, 450, 612, 793
MflI RGATCY 2 cut(s) 133, 144
MluCI AATT 2 cut(s) 788, 804
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 3 cut(s) 336, 482, 660
MnlI CCTC 6 cut(s) 25, 72, 269, 457, 465, 842
MroI TCCGGA 1 cut(s) 64
MseI TTAA 5 cut(s) 477, 495, 651, 851, 880
MslI CAYNNNNRTG 2 cut(s) 741, 747
MspA1I CMGCKG 1 cut(s) 729
MspI CCGG 4 cut(s) 65, 140, 178, 548
MspR9I CCNGG 3 cut(s) 81, 179, 549
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 214
NciI CCSGG 2 cut(s) 179, 549
NdeII GATC 9 cut(s) 41, 55, 67, 133, 144, 371, 433, 628, 783
NlaIII CATG 3 cut(s) 641, 719, 746
NlaIV GGNNCC 3 cut(s) 13, 135, 340
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 796
NsbI TGCGCA 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PfeI GAWTC 4 cut(s) 467, 574, 603, 663
PkrI GCNGC 2 cut(s) 184, 728
PleI GAGTC 1 cut(s) 836
PpsI GAGTC 1 cut(s) 836
Psp6I CCWGG 1 cut(s) 79
PspFI CCCAGC 2 cut(s) 642, 729
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 13, 135, 340
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
PsuI RGATCY 2 cut(s) 133, 144
PvuII CAGCTG 1 cut(s) 729
RsaI GTAC 1 cut(s) 814
RsaNI GTAC 1 cut(s) 813
RseI CAYNNNNRTG 2 cut(s) 741, 747
SaqAI TTAA 5 cut(s) 477, 495, 651, 851, 880
SatI GCNGC 2 cut(s) 183, 727
Sau3AI GATC 9 cut(s) 41, 55, 67, 133, 144, 371, 433, 628, 783
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 3 cut(s) 81, 179, 549
SfaNI GCATC 1 cut(s) 713
SfcI CTRYAG 1 cut(s) 556
SmiMI CAYNNNNRTG 2 cut(s) 741, 747
Sse9I AATT 2 cut(s) 788, 804
SsiI CCGC 2 cut(s) 137, 415
SspI AATATT 1 cut(s) 454
SspMI CTAG 2 cut(s) 239, 530
StyD4I CCNGG 3 cut(s) 79, 177, 547
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 281, 767
TaiI ACGT 1 cut(s) 680
TaqI TCGA 4 cut(s) 243, 436, 470, 537
TasI AATT 2 cut(s) 788, 804
TatI WGTACW 1 cut(s) 812
TfiI GAWTC 4 cut(s) 467, 574, 603, 663
Tru1I TTAA 5 cut(s) 477, 495, 651, 851, 880
Tru9I TTAA 5 cut(s) 477, 495, 651, 851, 880
TscAI CASTG 2 cut(s) 631, 801
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 2 cut(s) 182, 726
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 4 cut(s) 177, 390, 732, 794
TspGWI ACGGA 1 cut(s) 835
TspRI CASTG 2 cut(s) 631, 801
XapI RAATTY 1 cut(s) 788
XspI CTAG 2 cut(s) 239, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.