AT3G49030

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Forward (+)
18173087 .. 18174947
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49030.2

Sequence Viewer

Length: 1332 bp
ATGGAACAGCAATTAAAAACTGATGGTTTAAATTTGAGTATTCGAGATGCCGTGAAGGAGGACCGAATCAGTGAGTTGCCTGAAGATTTGCTTCTACAGATATTGTCTGATATTCCAACAGAAAATGTCATAGCCACGAGTGTTTTGTCTAAACGTTGGAGATCTCTTTGGAAGATGGTGCCAAATCTCACGTTTGATTTTACGTTTGATCCAAAGTATCACCAAACATTTTCAGAGAATCTTTACAGGTCTTTGACTTCACATGAAGCTTCGGTTCTAGAAAGTTTGCAATTGAATTTCACACGTGGAATTGATGGTTTGAATATTGGAATGTGGATTGCAACTGCATATGTACGTCATGTTCGTAAATTGGTATTGGTTAGTTTCGGTGATGTGCGTGATAAGAGGGCTAGATTTCGGAGTGCTTTGTTTAACTTCAATGATACACTTGACATTTTGGAAATCCAGGATTATATTCTTTTAGACCTTCCTTCTCCGGTTTGCTTGAAGTCCCTTAGAGAGCTGCGCCTATACGAAGTACACTTCAAAGACGAAGCATCTGTTTGCAACCTTTTATGCGGCTGCCCTAGTCTTGAAGTTTTGTCCGTGCATAGAGAACGCAATGTCGATGTGGAGACTTTTACTATTGTGGTGCCATCATTACAGAGACTAACCATATATGATTTTTGCATAGGAGGAGGTAAGGGAGGCTATGTGATAAATGCTCCTTCTTTGAAATACTTGAACATTGTAGGGTTCGAGGGGCTTGATTTTTGTTTGATTGAGAATGCGCCAGAGCTGGTGGAGGCAGAAATCAGTGACGTTTCTCATATAGCTAATGAGAACATTCTAGAATCTCTAACTTCAGTGAAACGTCTGTCCTTAGAATCGCCAATAAAGATTAAATTTCCTACCGGTAAAGTCTTCGATCAGCTAGTTTATTTAGATGTGCTTACAAAAGAAAGAGAGTGGTGGAATCTGCTTTCGAGAATGCTTGAGAGTTCTCCTAAATTGCAAATCCTCAAGCTCACCGGGCTATCTTGTATCGAAAAAGGTCTAGATGGACAGAATTGGAATCCACCAAAATGTGTACCGGAATGTTTGTTGTTCCATCTTGAGAAATTCTTGTGGACAGGATACGAATGGCAACGAGGAGATGAGAAAGAAGTGGCCACATACATACTAGAAAACGCAAGACTGTTGAAGAAAGCAACTTTCTCCACAAAACGCATTGATCTGGAAAATCTCGAAAAGAGACGTGAGATGCTCAACGAGTTGGCTAGTGTGGCCAGAGCTTCAGATTCATGTCATCTTGTGTTCCATTCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

443

Amino Acids

50.82

Weight (kDa)

5.55

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 62 1.7e-09 F-box domain
LRR_At5g56370 PF24758 111 - 250 3e-11 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 171 - 196 7.3e-06 Leucine Rich Repeat
FBD PF08387 335 - 380 1.2e-19 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 178, 652
AciI CCGC 1 cut(s) 579
AclI AACGTT 1 cut(s) 154
AclWI GGATC 1 cut(s) 203
AcoI YGGCCR 2 cut(s) 1170, 1287
AcsI RAATTY 4 cut(s) 31, 295, 905, 1121
AcuI CTGAAG 3 cut(s) 102, 849, 1281
AcvI CACGTG 1 cut(s) 305
AfaI GTAC 3 cut(s) 354, 540, 1092
AflIII ACRYGT 1 cut(s) 302
AgeI ACCGGT 1 cut(s) 914
AgsI TTSAA 9 cut(s) 295, 322, 439, 508, 547, 596, 736, 745, 1204
AjiI CACGTC 1 cut(s) 1259
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 7 cut(s) 269, 523, 799, 836, 934, 1027, 1295
AluI AGCT 7 cut(s) 269, 523, 799, 836, 934, 1027, 1295
Alw26I GTCTC 3 cut(s) 629, 661, 1249
AlwI GGATC 1 cut(s) 203
AoxI GGCC 2 cut(s) 1170, 1287
ApeKI GCWGC 2 cut(s) 523, 582
ApoI RAATTY 4 cut(s) 31, 295, 905, 1121
AsiGI ACCGGT 1 cut(s) 914
AspLEI GCGC 2 cut(s) 528, 793
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 1033
AsuHPI GGTGA 3 cut(s) 212, 401, 1021
AvaII GGWCC 1 cut(s) 61
BalI TGGCCA 2 cut(s) 1172, 1289
BanI GGYRCC 2 cut(s) 178, 652
BauI CACGAG 1 cut(s) 136
BbrPI CACGTG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 916
BbvI GCAGC 2 cut(s) 510, 569
BccI CCATC 6 cut(s) 17, 169, 308, 664, 1055, 1119
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 467
BciVI GTATCC 1 cut(s) 1130
BcnI CCSGG 1 cut(s) 1033
BcoDI GTCTC 3 cut(s) 629, 661, 1249
BfaI CTAG 8 cut(s) 278, 411, 588, 851, 935, 1058, 1184, 1281
BfmI CTRYAG 1 cut(s) 95
BfuI GTATCC 1 cut(s) 1130
BglII AGATCT 1 cut(s) 161
BisI GCNGC 3 cut(s) 524, 580, 583
BlsI GCNGC 3 cut(s) 525, 581, 584
Bme1390I CCNGG 2 cut(s) 467, 1033
Bme18I GGWCC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 1259
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 180, 654
BmrFI CCNGG 2 cut(s) 467, 1033
BmsI GCATC 3 cut(s) 37, 566, 1254
BpiI GAAGAC 1 cut(s) 916
BpuEI CTTGAG 3 cut(s) 1007, 1016, 1136
BpuMI CCSGG 1 cut(s) 1033
BsaAI YACGTR 1 cut(s) 305
BsaWI WCCGGW 3 cut(s) 496, 914, 1093
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bse118I RCCGGY 1 cut(s) 914
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 1 cut(s) 467
BseMI GCAATG 1 cut(s) 628
BseRI GAGGAG 2 cut(s) 711, 1167
BseXI GCAGC 2 cut(s) 510, 569
BshFI GGCC 2 cut(s) 1172, 1289
BshNI GGYRCC 2 cut(s) 178, 652
BshTI ACCGGT 1 cut(s) 914
BsiSI CCGG 4 cut(s) 497, 915, 1032, 1094
BslFI GGGAC 1 cut(s) 496
BsmAI GTCTC 3 cut(s) 629, 661, 1249
BsmBI CGTCTC 1 cut(s) 1249
BsmFI GGGAC 1 cut(s) 496
BsmI GAATGC 2 cut(s) 793, 996
BsnI GGCC 2 cut(s) 1172, 1289
Bsp143I GATC 4 cut(s) 161, 208, 928, 1234
BspACI CCGC 1 cut(s) 579
BspANI GGCC 2 cut(s) 1172, 1289
BspLI GGNNCC 2 cut(s) 180, 654
BspPI GGATC 1 cut(s) 203
BspT107I GGYRCC 2 cut(s) 178, 652
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 914
BssAI RCCGGY 1 cut(s) 914
BssMI GATC 4 cut(s) 161, 208, 928, 1234
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 1 cut(s) 1200
BstBAI YACGTR 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 515, 883
BstHHI GCGC 2 cut(s) 528, 793
BstKTI GATC 4 cut(s) 164, 211, 931, 1237
BstMAI GTCTC 3 cut(s) 629, 661, 1249
BstMBI GATC 4 cut(s) 161, 208, 928, 1234
BstMWI GCNNNNNNNGC 2 cut(s) 1033, 1286
BstNI CCWGG 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 465, 1031
BstSFI CTRYAG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 510, 569
BstV2I GAAGAC 1 cut(s) 916
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuI GTATCC 1 cut(s) 1130
BsuRI GGCC 2 cut(s) 1172, 1289
BtrI CACGTC 1 cut(s) 1259
BtsIMutI CAGTG 3 cut(s) 76, 823, 873
CfoI GCGC 2 cut(s) 528, 793
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 3 cut(s) 353, 539, 1091
CspAI ACCGGT 1 cut(s) 914
CviAII CATG 3 cut(s) 263, 359, 1305
CviQI GTAC 3 cut(s) 353, 539, 1091
DdeI CTNAG 2 cut(s) 515, 883
DpnI GATC 4 cut(s) 163, 210, 930, 1236
DpnII GATC 4 cut(s) 161, 208, 928, 1234
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 2 cut(s) 1170, 1287
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 3 cut(s) 102, 849, 1281
Eco72I CACGTG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 1249
FaeI CATG 3 cut(s) 266, 362, 1308
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 496
FatI CATG 3 cut(s) 262, 358, 1304
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 524, 580, 583
Fsp4HI GCNGC 3 cut(s) 524, 580, 583
FspBI CTAG 8 cut(s) 278, 411, 588, 851, 935, 1058, 1184, 1281
GlaI GCGC 2 cut(s) 527, 792
GluI GCNGC 3 cut(s) 524, 580, 583
HaeIII GGCC 2 cut(s) 1172, 1289
HapII CCGG 4 cut(s) 497, 915, 1032, 1094
HhaI GCGC 2 cut(s) 528, 793
Hin1II CATG 3 cut(s) 266, 362, 1308
Hin6I GCGC 2 cut(s) 526, 791
HinP1I GCGC 2 cut(s) 526, 791
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 7 cut(s) 66, 238, 854, 887, 976, 1075, 1301
HpaII CCGG 4 cut(s) 497, 915, 1032, 1094
HphI GGTGA 3 cut(s) 212, 401, 1021
Hpy166II GTNNAC 3 cut(s) 541, 1091, 1131
Hpy188I TCNGA 4 cut(s) 109, 235, 420, 1300
Hpy188III TCNNGA 9 cut(s) 44, 278, 593, 851, 987, 1058, 1115, 1238, 1247
Hpy8I GTNNAC 3 cut(s) 541, 1091, 1131
HpyAV CCTTC 4 cut(s) 49, 497, 501, 738
HpyCH4III ACNGT 1 cut(s) 1200
HpyCH4IV ACGT 8 cut(s) 154, 191, 203, 304, 355, 822, 874, 1258
HpyCH4V TGCA 7 cut(s) 289, 341, 347, 567, 610, 690, 1015
HpyF10VI GCNNNNNNNGC 2 cut(s) 1033, 1286
HpyF3I CTNAG 2 cut(s) 515, 883
HpySE526I ACGT 8 cut(s) 154, 191, 203, 304, 355, 822, 874, 1258
Hsp92II CATG 3 cut(s) 266, 362, 1308
HspAI GCGC 2 cut(s) 526, 791
Kzo9I GATC 4 cut(s) 161, 208, 928, 1234
LmnI GCTCC 1 cut(s) 730
Lsp1109I GCAGC 2 cut(s) 510, 569
LweI GCATC 3 cut(s) 37, 566, 1254
MaeI CTAG 8 cut(s) 278, 411, 588, 851, 935, 1058, 1184, 1281
MaeII ACGT 8 cut(s) 154, 191, 203, 304, 355, 822, 874, 1258
MaeIII GTNAC 1 cut(s) 818
MalI GATC 4 cut(s) 163, 210, 930, 1236
MboI GATC 4 cut(s) 161, 208, 928, 1234
MboII GAAGA 4 cut(s) 95, 184, 916, 1216
MfeI CAATTG 1 cut(s) 290
MflI RGATCY 1 cut(s) 161
MlsI TGGCCA 2 cut(s) 1172, 1289
MluNI TGGCCA 2 cut(s) 1172, 1289
MmeI TCCRAC 2 cut(s) 137, 140
MnlI CCTC 9 cut(s) 52, 399, 689, 692, 701, 754, 799, 1031, 1145
Mox20I TGGCCA 2 cut(s) 1172, 1289
MscI TGGCCA 2 cut(s) 1172, 1289
MseI TTAA 4 cut(s) 14, 29, 432, 903
MslI CAYNNNNRTG 1 cut(s) 1084
Msp20I TGGCCA 2 cut(s) 1172, 1289
MspI CCGG 4 cut(s) 497, 915, 1032, 1094
MspR9I CCNGG 2 cut(s) 467, 1033
MunI CAATTG 1 cut(s) 290
Mva1269I GAATGC 2 cut(s) 793, 996
MvaI CCWGG 1 cut(s) 467
MwoI GCNNNNNNNGC 2 cut(s) 1033, 1286
NciI CCSGG 1 cut(s) 1033
NdeI CATATG 1 cut(s) 349
NdeII GATC 4 cut(s) 161, 208, 928, 1234
NlaIII CATG 3 cut(s) 266, 362, 1308
NlaIV GGNNCC 2 cut(s) 180, 654
NmuCI GTSAC 1 cut(s) 818
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PctI GAATGC 2 cut(s) 793, 996
PfeI GAWTC 7 cut(s) 66, 238, 854, 887, 976, 1075, 1301
PfoI TCCNGGA 1 cut(s) 465
PinAI ACCGGT 1 cut(s) 914
PkrI GCNGC 3 cut(s) 525, 581, 584
PmaCI CACGTG 1 cut(s) 305
PmlI CACGTG 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 305
Psp1406I AACGTT 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 465
PspCI CACGTG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 2 cut(s) 180, 654
PspPI GGNCC 1 cut(s) 61
PsrI GAACNNNNNNTAC 2 cut(s) 345, 377
PsuI RGATCY 1 cut(s) 161
RsaI GTAC 3 cut(s) 354, 540, 1092
RsaNI GTAC 3 cut(s) 353, 539, 1091
RseI CAYNNNNRTG 1 cut(s) 1084
SaqAI TTAA 4 cut(s) 14, 29, 432, 903
SatI GCNGC 3 cut(s) 524, 580, 583
Sau3AI GATC 4 cut(s) 161, 208, 928, 1234
Sau96I GGNCC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 467, 1033
SfaNI GCATC 3 cut(s) 37, 566, 1254
SfcI CTRYAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 1084
SmlI CTYRAG 3 cut(s) 995, 1022, 1115
SmoI CTYRAG 3 cut(s) 995, 1022, 1115
SsiI CCGC 1 cut(s) 579
SspI AATATT 1 cut(s) 325
SspMI CTAG 8 cut(s) 278, 411, 588, 851, 935, 1058, 1184, 1281
StyD4I CCNGG 2 cut(s) 465, 1031
TaaI ACNGT 1 cut(s) 1200
TaiI ACGT 8 cut(s) 157, 194, 206, 307, 358, 825, 877, 1261
TaqI TCGA 7 cut(s) 43, 627, 759, 927, 986, 1047, 1248
TaqII GACCGA 1 cut(s) 78
TatI WGTACW 1 cut(s) 538
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 7 cut(s) 66, 238, 854, 887, 976, 1075, 1301
Tru1I TTAA 4 cut(s) 14, 29, 432, 903
Tru9I TTAA 4 cut(s) 14, 29, 432, 903
TscAI CASTG 3 cut(s) 76, 823, 873
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 2 cut(s) 523, 582
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 2 cut(s) 279, 1293
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 3 cut(s) 76, 823, 873
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 4 cut(s) 31, 295, 905, 1121
XbaI TCTAGA 3 cut(s) 277, 850, 1057
XspI CTAG 8 cut(s) 278, 411, 588, 851, 935, 1058, 1184, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.