RLG00000026130

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000140
Physical Location & Seq
Forward (+)
732608 .. 733337
730 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026130

Sequence Viewer

Length: 525 bp
ATGGTGACTTTTTCAACGAGCATATATTACTTGTACAATGCAACATCGCTTGAGAAAGCATGCATTAGGCAAGGATGTGTGAAACACCGCAATCGCTTATACCAGCTTCTCCAATGTCTCTCTAGTGTAAAAGATCTAGAACTCGGTCTTGATGATTATGAGGTTCCAGTAGGCGTAGGAGAGCTCTTGGATGATATGCCCATGTTCAAGAACCTAACCCGTTTGGATGTAAATGGCTATGTTCATGGAAGTTTGGTGCTCAATTCTAACATTGGACTGATGAAGCTGCTGAAGAACTCTCCTCGTCTAGAAGTGCTTAAAGCTTCATGGGTTTTTCGTCTACCCCTTGACCAAGATGATATAAATCCGATGCCGCCATGTTTCCGTTCACATCTAAAGATCATCGAAGTTCATATATCTGATGGAAAAGAGTCATACACAGCACTCAATAGTCTGTTAAGGAATGCGCATGTCCTGAAGAAGATAGTTATTTCATTCTGTTGTGACTCAAAGAGATATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

175

Amino Acids

19.84

Weight (kDa)

8.44

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 124 - 164 5.2e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 468
AccI GTMKAC 1 cut(s) 340
AciI CCGC 2 cut(s) 88, 374
AcuI CTGAAG 2 cut(s) 311, 497
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 2 cut(s) 15, 208
AluBI AGCT 4 cut(s) 106, 184, 286, 323
AluI AGCT 4 cut(s) 106, 184, 286, 323
Alw21I GWGCWC 2 cut(s) 186, 261
Alw26I GTCTC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 286
AspLEI GCGC 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 16
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 2 cut(s) 186, 261
BbvI GCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 3 cut(s) 123, 137, 308
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 287, 374
BlsI GCNGC 2 cut(s) 288, 375
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 363
BseGI GGATG 3 cut(s) 80, 196, 232
BseJI GATNNNNATC 1 cut(s) 363
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 186, 261
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 186, 261
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 2 cut(s) 133, 399
BspACI CCGC 2 cut(s) 88, 374
BspLI GGNNCC 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 1 cut(s) 167
BssMI GATC 2 cut(s) 133, 399
BstAUI TGTACA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 3 cut(s) 80, 196, 232
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 2 cut(s) 136, 402
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 2 cut(s) 133, 399
BstNSI RCATGY 2 cut(s) 63, 473
BstV1I GCAGC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 80, 196, 232
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 34
CviAII CATG 6 cut(s) 60, 202, 245, 327, 378, 470
CviJI RGCY 5 cut(s) 106, 184, 237, 286, 323
CviKI_1 RGCY 5 cut(s) 106, 184, 237, 286, 323
CviQI GTAC 1 cut(s) 34
DpnI GATC 2 cut(s) 135, 401
DpnII GATC 2 cut(s) 133, 399
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 2 cut(s) 311, 497
EcoICRI GAGCTC 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 6 cut(s) 63, 205, 248, 330, 381, 473
FatI CATG 6 cut(s) 59, 201, 244, 326, 377, 469
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 287, 374
FokI GGATG 3 cut(s) 87, 203, 239
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 287, 374
FspAI RTGCGCAY 1 cut(s) 468
FspBI CTAG 3 cut(s) 123, 137, 308
FspI TGCGCA 1 cut(s) 468
GlaI GCGC 1 cut(s) 468
GluI GCNGC 2 cut(s) 287, 374
HhaI GCGC 1 cut(s) 469
Hin1II CATG 6 cut(s) 63, 205, 248, 330, 381, 473
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 2 cut(s) 431, 506
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 341, 389
Hpy188I TCNGA 2 cut(s) 369, 421
Hpy188III TCNNGA 5 cut(s) 137, 149, 208, 308, 475
Hpy8I GTNNAC 2 cut(s) 341, 389
HpyCH4V TGCA 2 cut(s) 41, 63
Hsp92II CATG 6 cut(s) 63, 205, 248, 330, 381, 473
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 2 cut(s) 133, 399
LpnPI CCDG 3 cut(s) 116, 180, 488
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 360
MaeI CTAG 3 cut(s) 123, 137, 308
MaeIII GTNAC 2 cut(s) 4, 503
MalI GATC 2 cut(s) 135, 401
MboI GATC 2 cut(s) 133, 399
MboII GAAGA 3 cut(s) 304, 490, 493
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 186, 261
MluCI AATT 1 cut(s) 262
MlyI GAGTC 2 cut(s) 440, 500
MnlI CCTC 2 cut(s) 154, 312
Mph1103I ATGCAT 1 cut(s) 65
MseI TTAA 3 cut(s) 318, 458, 523
Mva1269I GAATGC 1 cut(s) 469
NdeII GATC 2 cut(s) 133, 399
NlaIII CATG 6 cut(s) 63, 205, 248, 330, 381, 473
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 4, 503
NsbI TGCGCA 1 cut(s) 468
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 2 cut(s) 63, 473
PaeI GCATGC 1 cut(s) 63
PctI GAATGC 1 cut(s) 469
PkrI GCNGC 2 cut(s) 288, 375
PleI GAGTC 2 cut(s) 439, 500
PpsI GAGTC 2 cut(s) 439, 500
Psp124BI GAGCTC 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 318, 458, 523
SatI GCNGC 2 cut(s) 287, 374
Sau3AI GATC 2 cut(s) 133, 399
SchI GAGTC 2 cut(s) 440, 500
SduI GDGCHC 2 cut(s) 186, 261
SetI ASST 6 cut(s) 108, 165, 186, 216, 288, 325
SfaNI GCATC 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SphI GCATGC 1 cut(s) 63
Sse9I AATT 1 cut(s) 262
SsiI CCGC 2 cut(s) 88, 374
SspMI CTAG 3 cut(s) 123, 137, 308
SstI GAGCTC 1 cut(s) 186
TaqI TCGA 1 cut(s) 405
TaqII GACCGA 1 cut(s) 134
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 33
TauI GCSGC 1 cut(s) 376
Tru1I TTAA 3 cut(s) 318, 458, 523
Tru9I TTAA 3 cut(s) 318, 458, 523
TseFI GTSAC 2 cut(s) 4, 503
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 2 cut(s) 4, 503
TspDTI ATGAA 5 cut(s) 233, 296, 315, 401, 483
TspGWI ACGGA 1 cut(s) 374
XbaI TCTAGA 2 cut(s) 136, 307
XceI RCATGY 2 cut(s) 63, 473
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 3 cut(s) 123, 137, 308
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.