AT3G49045

mRNA transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Forward (+)
18178861 .. 18179339
479 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49045.1

Sequence Viewer

Length: 357 bp
ATGCTTGAAGCTTCTCCTAAGTTGCAAATCCTCAAGCTCACCGACCTAAATATGTCTTCTACCAAAGGAAATCAGATAGGCCAAAAATGGATCCAGCCTAAATGTGTACCGGAATGTTTGTTATTCCATCTTGAGACATTCGTGTGGACAGGATACGAATGGCAACGAAGAGATGAGAAAGAAGTGGCGAGATACATCCTAAGAAACACAACAAGTTTGAAGAAAGCAACTTTCTCCACAAAACCCATCGAACCGGTAAAGCTCAAAGTTTTTAAAAAGAGACGTGAGATCCTCAACGAGTTGGCTAGTTTGGGCAGGGCTTCAAATCCAAGTGATTTTGTGTTTGAATCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.73

Weight (kDa)

9.61

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 32 - 78 6.5e-22 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 85, 98, 283
AfaI GTAC 1 cut(s) 108
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 4 cut(s) 8, 220, 324, 347
AjiI CACGTC 1 cut(s) 284
AluBI AGCT 3 cut(s) 11, 37, 262
AluI AGCT 3 cut(s) 11, 37, 262
Alw26I GTCTC 2 cut(s) 128, 274
AlwI GGATC 3 cut(s) 85, 98, 283
AoxI GGCC 1 cut(s) 79
AsiGI ACCGGT 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 31
BamHI GGATCC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 2 cut(s) 135, 254
BciVI GTATCC 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 128, 274
BfaI CTAG 1 cut(s) 306
BfuI GTATCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 17, 152
BsaWI WCCGGW 2 cut(s) 109, 253
Bse118I RCCGGY 1 cut(s) 253
BseGI GGATG 1 cut(s) 195
BshFI GGCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 253
BsiSI CCGG 2 cut(s) 110, 254
BsmAI GTCTC 2 cut(s) 128, 274
BsmBI CGTCTC 1 cut(s) 274
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 90, 288
BspANI GGCC 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 3 cut(s) 85, 98, 283
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssMI GATC 2 cut(s) 90, 288
Bst6I CTCTTC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 18, 200
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 2 cut(s) 93, 291
BstMAI GTCTC 2 cut(s) 128, 274
BstMBI GATC 2 cut(s) 90, 288
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 90, 288
BstYI RGATCY 2 cut(s) 90, 288
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 81
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 253
Csp6I GTAC 1 cut(s) 107
CspAI ACCGGT 1 cut(s) 253
CviJI RGCY 7 cut(s) 11, 37, 81, 97, 262, 305, 320
CviKI_1 RGCY 7 cut(s) 11, 37, 81, 97, 262, 305, 320
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 2 cut(s) 18, 200
DpnI GATC 2 cut(s) 92, 290
DpnII GATC 2 cut(s) 90, 288
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 274
FaiI YATR 1 cut(s) 53
FokI GGATG 1 cut(s) 182
FspBI CTAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 110, 254
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 1 cut(s) 347
HpaII CCGG 2 cut(s) 110, 254
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 107, 147
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 107, 147
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 18, 200
HpySE526I ACGT 1 cut(s) 283
Kzo9I GATC 2 cut(s) 90, 288
LpnPI CCDG 5 cut(s) 107, 123, 135, 267, 301
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 283
MalI GATC 2 cut(s) 92, 290
MboI GATC 2 cut(s) 90, 288
MboII GAAGA 3 cut(s) 48, 180, 232
MflI RGATCY 2 cut(s) 90, 288
MnlI CCTC 2 cut(s) 41, 302
MseI TTAA 2 cut(s) 273, 355
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 2 cut(s) 110, 254
NdeII GATC 2 cut(s) 90, 288
NlaIV GGNNCC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 347
PinAI ACCGGT 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 2 cut(s) 90, 288
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 273, 355
Sau3AI GATC 2 cut(s) 90, 288
SetI ASST 5 cut(s) 13, 39, 48, 264, 286
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 32, 131
SmoI CTYRAG 2 cut(s) 32, 131
SspMI CTAG 1 cut(s) 306
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 249
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 2 cut(s) 273, 355
Tru9I TTAA 2 cut(s) 273, 355
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.